Wall clock time and date at job start Sat Apr 11 2020 06:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46646 * 2 1 4 4 C 1.53005 * 109.47084 * 119.99587 * 2 1 3 5 5 H 1.09002 * 109.46899 * 300.00129 * 4 2 1 6 6 C 1.52998 * 109.46681 * 180.02562 * 4 2 1 7 7 C 1.53009 * 109.46920 * 174.99778 * 6 4 2 8 8 N 1.46497 * 109.47238 * 179.97438 * 7 6 4 9 9 C 1.46496 * 120.00129 * 270.00499 * 8 7 6 10 10 C 1.34777 * 119.99525 * 90.00006 * 8 7 6 11 11 O 1.21283 * 120.00463 * 0.02562 * 10 8 7 12 12 C 1.50700 * 119.99675 * 179.72583 * 10 8 7 13 13 N 1.46499 * 109.47257 * 180.27849 * 12 10 8 14 14 C 1.34771 * 124.17787 * 269.72684 * 13 12 10 15 15 O 1.21227 * 127.15689 * 359.97438 * 14 13 12 16 16 C 1.51589 * 105.68383 * 179.97438 * 14 13 12 17 17 N 1.47313 * 103.59401 * 0.32194 * 16 14 13 18 18 C 1.33796 * 124.18020 * 90.02268 * 13 12 10 19 19 O 1.21541 * 123.76746 * 359.96412 * 18 13 12 20 20 N 1.46492 * 109.47344 * 60.00206 * 4 2 1 21 21 C 1.36938 * 120.00065 * 275.00373 * 20 4 2 22 22 H 1.08003 * 120.00245 * 359.97438 * 21 20 4 23 23 C 1.38816 * 119.99951 * 179.97438 * 21 20 4 24 24 N 1.31615 * 119.99902 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99948 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47314 * 89.99685 * 25 23 21 27 27 H 1.48500 * 109.47135 * 210.00155 * 25 23 21 28 28 H 1.48506 * 109.47104 * 329.99788 * 25 23 21 29 29 H 1.09000 * 109.47125 * 299.99833 * 1 2 3 30 30 H 1.08994 * 109.47353 * 60.00667 * 1 2 3 31 31 H 1.09002 * 109.46872 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47227 * 239.99713 * 2 1 3 33 33 H 1.09003 * 109.46861 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46744 * 299.99547 * 3 2 1 35 35 H 1.08994 * 109.47542 * 59.99906 * 3 2 1 36 36 H 1.09000 * 109.47318 * 55.00229 * 6 4 2 37 37 H 1.08993 * 109.47225 * 294.99667 * 6 4 2 38 38 H 1.09000 * 109.46757 * 60.00107 * 7 6 4 39 39 H 1.09001 * 109.46821 * 299.99970 * 7 6 4 40 40 H 1.08997 * 109.47115 * 269.99822 * 9 8 7 41 41 H 1.08995 * 109.47364 * 30.00213 * 9 8 7 42 42 H 1.09002 * 109.47090 * 149.99764 * 9 8 7 43 43 H 1.09009 * 109.47352 * 300.27556 * 12 10 8 44 44 H 1.08998 * 109.47585 * 60.27844 * 12 10 8 45 45 H 1.08998 * 110.76536 * 241.71031 * 16 14 13 46 46 H 1.09004 * 110.56041 * 118.83253 * 16 14 13 47 47 H 0.96991 * 126.69003 * 179.77154 * 17 16 14 48 48 H 0.96998 * 120.00279 * 94.99423 * 20 4 2 49 49 H 0.97003 * 119.99484 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 3.5700 -0.7206 1.2496 7 6 4.0801 -1.3301 2.5571 8 7 5.5450 -1.3301 2.5571 9 6 6.2775 -2.4799 2.0210 10 6 6.2188 -0.2721 3.0503 11 8 5.6124 0.6796 3.4945 12 6 7.7258 -0.2748 3.0560 13 7 8.2141 0.9748 3.6445 14 6 8.4761 2.0925 2.9386 15 8 8.3571 2.2476 1.7422 16 6 8.9505 3.1154 3.9518 17 7 8.9031 2.3844 5.2299 18 6 8.4604 1.1457 4.9485 19 8 8.3035 0.2780 5.7850 20 7 1.5518 -2.1023 1.2495 21 6 0.3102 -2.3896 1.7506 22 1 -0.3089 -1.5980 2.1461 23 6 -0.1526 -3.6984 1.7502 24 7 0.6017 -4.6630 1.2677 25 14 -1.8460 -4.0903 2.4344 26 1 -2.8532 -3.9963 1.3473 27 1 -1.8478 -5.4662 2.9933 28 1 -2.1833 -3.1201 3.5069 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.9330 0.3033 1.1602 37 1 3.9337 -1.3098 0.4079 38 1 3.7171 -2.3540 2.6465 39 1 3.7163 -0.7408 3.3988 40 1 6.4592 -3.1994 2.8194 41 1 5.6886 -2.9513 1.2342 42 1 7.2300 -2.1446 1.6103 43 1 8.0855 -1.1186 3.6449 44 1 8.0929 -0.3625 2.0335 45 1 8.2803 3.9746 3.9763 46 1 9.9695 3.4315 3.7283 47 1 9.1439 2.7292 6.1039 48 1 2.1079 -2.8134 0.8945 49 1 0.2780 -5.5774 1.2671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675141534.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:49 Heat of formation + Delta-G solvation = -62.984970 kcal Electronic energy + Delta-G solvation = -30796.901662 eV Core-core repulsion = 26567.667827 eV Total energy + Delta-G solvation = -4229.233835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.65509 -39.77288 -38.85289 -37.36495 -36.38189 -35.54085 -34.91246 -33.02345 -31.64559 -29.91826 -28.84901 -27.82850 -26.96616 -26.13870 -25.02549 -23.25138 -23.07634 -21.69162 -20.79268 -19.33021 -19.09075 -18.35366 -17.81710 -17.19670 -17.04697 -16.64497 -16.22389 -15.65057 -15.57590 -15.20386 -14.97891 -14.47255 -14.33287 -14.09060 -13.92075 -13.74773 -13.53880 -13.44451 -13.20219 -13.05220 -12.62993 -12.51928 -12.19456 -11.92676 -11.63569 -11.54219 -11.32489 -11.16088 -10.88594 -10.77205 -10.68476 -10.59612 -10.44408 -10.25026 -10.19059 -10.01772 -9.91030 -9.84608 -9.53643 -9.39821 -8.86267 -8.51806 -6.90945 -5.74937 -3.01438 1.32978 1.74608 2.54239 2.63264 2.79277 3.13886 3.44609 3.51156 3.51592 3.63959 4.33849 4.37179 4.58883 4.61777 4.72211 4.82403 5.01966 5.10004 5.25227 5.31770 5.42983 5.51372 5.55677 5.67668 5.69765 5.74448 5.87661 5.99826 6.15722 6.16500 6.25783 6.33944 6.38472 6.44802 6.48793 6.58813 6.67672 6.71965 6.77296 6.84284 6.91691 7.02375 7.20778 7.37430 7.40210 7.75123 7.78491 8.11650 8.44238 9.55638 10.13054 10.48783 11.47801 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015685 B = 0.002675 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.695791 B =10463.449168 C =11294.826399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C -0.146 4.146 4 C 0.185 3.815 5 H 0.048 0.952 6 C -0.135 4.135 7 C 0.120 3.880 8 N -0.607 5.607 9 C 0.072 3.928 10 C 0.498 3.502 11 O -0.531 6.531 12 C 0.101 3.899 13 N -0.562 5.562 14 C 0.525 3.475 15 O -0.465 6.465 16 C 0.066 3.934 17 N -0.728 5.728 18 C 0.707 3.293 19 O -0.539 6.539 20 N -0.722 5.722 21 C -0.227 4.227 22 H 0.071 0.929 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.900 3.100 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 H 0.039 0.961 30 H 0.028 0.972 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.442 0.558 48 H 0.382 0.618 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.201 13.228 2.717 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.204 4.204 4 C 0.074 3.926 5 H 0.066 0.934 6 C -0.174 4.174 7 C -0.002 4.002 8 N -0.340 5.340 9 C -0.072 4.072 10 C 0.284 3.716 11 O -0.407 6.407 12 C -0.025 4.025 13 N -0.307 5.307 14 C 0.313 3.687 15 O -0.334 6.334 16 C -0.062 4.062 17 N -0.393 5.393 18 C 0.408 3.592 19 O -0.412 6.412 20 N -0.363 5.363 21 C -0.359 4.359 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.732 3.268 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.143 0.857 46 H 0.142 0.858 47 H 0.286 0.714 48 H 0.216 0.784 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 20.518 13.237 2.788 24.576 hybrid contribution -0.756 -0.421 0.448 0.974 sum 19.762 12.817 3.236 23.775 Atomic orbital electron populations 1.21834 0.95330 1.03749 0.98811 1.21743 0.96565 0.94347 1.00445 1.21921 1.00356 0.97494 1.00597 1.20213 0.89794 0.87442 0.95126 0.93430 1.22206 0.97618 1.00619 0.96993 1.21641 0.76034 1.03530 0.98945 1.47932 1.08084 1.17443 1.60513 1.21908 0.96835 0.88562 0.99848 1.20605 0.89511 0.83123 0.78399 1.90717 1.69685 1.34148 1.46176 1.21553 0.93289 0.85795 1.01817 1.45839 1.61084 1.14588 1.09237 1.20889 0.75877 0.83359 0.88612 1.90839 1.49705 1.80035 1.12851 1.22446 1.05390 0.96166 0.82172 1.45339 1.71497 1.11969 1.10524 1.15759 0.77681 0.83770 0.81991 1.91035 1.56851 1.44699 1.48585 1.42452 1.17938 1.02082 1.73780 1.19224 0.92749 0.92307 1.31573 0.91076 1.24683 0.98277 0.95890 1.02197 1.69645 1.36816 0.99764 1.52082 0.86281 0.84594 0.77326 0.78600 1.21867 1.21930 1.20826 0.94153 0.95248 0.89576 0.92334 0.93213 0.93927 0.93322 0.91764 0.92285 0.88746 0.90235 0.91985 0.89826 0.91507 0.85623 0.85788 0.85688 0.85813 0.71371 0.78446 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.26 37.16 0.31 -2.39 16 2 C -0.11 -2.01 2.69 -90.62 -0.24 -2.25 16 3 C -0.15 -2.31 8.85 37.16 0.33 -1.98 16 4 C 0.18 3.63 2.02 -67.93 -0.14 3.50 16 5 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 6 C -0.14 -2.30 4.86 -26.73 -0.13 -2.43 16 7 C 0.12 2.02 5.29 -4.04 -0.02 2.00 16 8 N -0.61 -8.43 2.87 -181.57 -0.52 -8.95 16 9 C 0.07 0.71 10.24 59.84 0.61 1.32 16 10 C 0.50 7.31 7.74 -10.98 -0.09 7.22 16 11 O -0.53 -9.83 16.01 5.55 0.09 -9.74 16 12 C 0.10 1.06 4.73 -5.19 -0.02 1.04 16 13 N -0.56 -6.13 2.09 -122.02 -0.26 -6.38 16 14 C 0.53 5.14 8.32 -10.55 -0.09 5.05 16 15 O -0.47 -5.86 17.75 5.60 0.10 -5.76 16 16 C 0.07 0.33 7.97 -4.31 -0.03 0.29 16 17 N -0.73 -4.74 6.58 -65.73 -0.43 -5.17 16 18 C 0.71 7.94 8.62 -88.02 -0.76 7.19 16 19 O -0.54 -8.05 17.48 5.33 0.09 -7.95 16 20 N -0.72 -16.94 4.45 -53.43 -0.24 -17.18 16 21 C -0.23 -5.98 7.57 -15.06 -0.11 -6.10 16 22 H 0.07 1.86 7.40 -52.48 -0.39 1.48 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 25 Si 0.90 22.16 29.55 -169.99 -5.02 17.14 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 1.93 6.01 -51.93 -0.31 1.61 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.76 6.32 -51.93 -0.33 0.43 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.10 6.17 -51.93 -0.32 0.78 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.72 7.68 -51.93 -0.40 1.32 16 39 H 0.08 1.50 7.42 -51.93 -0.39 1.11 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 42 H 0.07 0.46 6.45 -51.93 -0.33 0.12 16 43 H 0.13 1.12 7.82 -51.92 -0.41 0.71 16 44 H 0.12 1.01 7.26 -51.93 -0.38 0.63 16 45 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.44 1.71 8.96 -40.82 -0.37 1.34 16 48 H 0.38 9.50 7.80 -40.82 -0.32 9.18 16 49 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 400.89 15.07 6.04 6.04 Total: -1.00 -36.20 400.89 -7.62 -43.83 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -7.71 Total: 8.64 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -0.48 Total: 11.94 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -0.72 Total: -64.14 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.28 Total: -23.45 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.20 -7.62 -43.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675141534.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.157 kcal (2) G-P(sol) polarization free energy of solvation -36.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds