Wall clock time and date at job start Sat Apr 11 2020 06:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46646 * 2 1 4 4 C 1.53005 * 109.47084 * 119.99587 * 2 1 3 5 5 H 1.09002 * 109.46899 * 300.00129 * 4 2 1 6 6 C 1.52998 * 109.46681 * 180.02562 * 4 2 1 7 7 C 1.53009 * 109.46920 * 174.99778 * 6 4 2 8 8 N 1.46497 * 109.47238 * 179.97438 * 7 6 4 9 9 C 1.46496 * 120.00129 * 270.00499 * 8 7 6 10 10 C 1.34777 * 119.99525 * 90.00006 * 8 7 6 11 11 O 1.21283 * 120.00463 * 0.02562 * 10 8 7 12 12 C 1.50700 * 119.99675 * 179.72583 * 10 8 7 13 13 N 1.46499 * 109.47257 * 180.27849 * 12 10 8 14 14 C 1.34771 * 124.17787 * 269.72684 * 13 12 10 15 15 O 1.21227 * 127.15689 * 359.97438 * 14 13 12 16 16 C 1.51589 * 105.68383 * 179.97438 * 14 13 12 17 17 N 1.47313 * 103.59401 * 0.32194 * 16 14 13 18 18 C 1.33796 * 124.18020 * 90.02268 * 13 12 10 19 19 O 1.21541 * 123.76746 * 359.96412 * 18 13 12 20 20 N 1.46492 * 109.47344 * 60.00206 * 4 2 1 21 21 C 1.36938 * 120.00065 * 275.00373 * 20 4 2 22 22 H 1.08003 * 120.00245 * 359.97438 * 21 20 4 23 23 C 1.38816 * 119.99951 * 179.97438 * 21 20 4 24 24 N 1.31615 * 119.99902 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99948 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47314 * 89.99685 * 25 23 21 27 27 H 1.48500 * 109.47135 * 210.00155 * 25 23 21 28 28 H 1.48506 * 109.47104 * 329.99788 * 25 23 21 29 29 H 1.09000 * 109.47125 * 299.99833 * 1 2 3 30 30 H 1.08994 * 109.47353 * 60.00667 * 1 2 3 31 31 H 1.09002 * 109.46872 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47227 * 239.99713 * 2 1 3 33 33 H 1.09003 * 109.46861 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46744 * 299.99547 * 3 2 1 35 35 H 1.08994 * 109.47542 * 59.99906 * 3 2 1 36 36 H 1.09000 * 109.47318 * 55.00229 * 6 4 2 37 37 H 1.08993 * 109.47225 * 294.99667 * 6 4 2 38 38 H 1.09000 * 109.46757 * 60.00107 * 7 6 4 39 39 H 1.09001 * 109.46821 * 299.99970 * 7 6 4 40 40 H 1.08997 * 109.47115 * 269.99822 * 9 8 7 41 41 H 1.08995 * 109.47364 * 30.00213 * 9 8 7 42 42 H 1.09002 * 109.47090 * 149.99764 * 9 8 7 43 43 H 1.09009 * 109.47352 * 300.27556 * 12 10 8 44 44 H 1.08998 * 109.47585 * 60.27844 * 12 10 8 45 45 H 1.08998 * 110.76536 * 241.71031 * 16 14 13 46 46 H 1.09004 * 110.56041 * 118.83253 * 16 14 13 47 47 H 0.96991 * 126.69003 * 179.77154 * 17 16 14 48 48 H 0.96998 * 120.00279 * 94.99423 * 20 4 2 49 49 H 0.97003 * 119.99484 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 3.5700 -0.7206 1.2496 7 6 4.0801 -1.3301 2.5571 8 7 5.5450 -1.3301 2.5571 9 6 6.2775 -2.4799 2.0210 10 6 6.2188 -0.2721 3.0503 11 8 5.6124 0.6796 3.4945 12 6 7.7258 -0.2748 3.0560 13 7 8.2141 0.9748 3.6445 14 6 8.4761 2.0925 2.9386 15 8 8.3571 2.2476 1.7422 16 6 8.9505 3.1154 3.9518 17 7 8.9031 2.3844 5.2299 18 6 8.4604 1.1457 4.9485 19 8 8.3035 0.2780 5.7850 20 7 1.5518 -2.1023 1.2495 21 6 0.3102 -2.3896 1.7506 22 1 -0.3089 -1.5980 2.1461 23 6 -0.1526 -3.6984 1.7502 24 7 0.6017 -4.6630 1.2677 25 14 -1.8460 -4.0903 2.4344 26 1 -2.8532 -3.9963 1.3473 27 1 -1.8478 -5.4662 2.9933 28 1 -2.1833 -3.1201 3.5069 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.9330 0.3033 1.1602 37 1 3.9337 -1.3098 0.4079 38 1 3.7171 -2.3540 2.6465 39 1 3.7163 -0.7408 3.3988 40 1 6.4592 -3.1994 2.8194 41 1 5.6886 -2.9513 1.2342 42 1 7.2300 -2.1446 1.6103 43 1 8.0855 -1.1186 3.6449 44 1 8.0929 -0.3625 2.0335 45 1 8.2803 3.9746 3.9763 46 1 9.9695 3.4315 3.7283 47 1 9.1439 2.7292 6.1039 48 1 2.1079 -2.8134 0.8945 49 1 0.2780 -5.5774 1.2671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675141534.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:49 Heat of formation + Delta-G solvation = -90.061172 kcal Electronic energy + Delta-G solvation = -30798.075774 eV Core-core repulsion = 26567.667827 eV Total energy + Delta-G solvation = -4230.407948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.40440 -40.92561 -39.68365 -38.94544 -37.21901 -36.74728 -35.70241 -34.93485 -33.09655 -31.63613 -29.85696 -28.50539 -28.08555 -27.52078 -26.53018 -24.87195 -23.95291 -22.96570 -21.85449 -20.80688 -20.25778 -19.13534 -19.10259 -18.73364 -17.91672 -17.56625 -17.15517 -16.85162 -16.68835 -16.32428 -16.19019 -15.77693 -15.36198 -15.30053 -15.24741 -15.06338 -14.90028 -14.60456 -14.23301 -14.11227 -14.00977 -13.57817 -13.44469 -13.19234 -13.02175 -12.98958 -12.84663 -12.74952 -12.55556 -12.21647 -12.18803 -12.00614 -11.77501 -11.73864 -11.66917 -11.42246 -11.39166 -11.21687 -10.83609 -10.67997 -10.40788 -9.73573 -8.90054 -7.87725 -5.12252 0.60602 1.00964 1.43422 1.47540 1.48498 1.55605 1.76745 2.12154 2.28649 2.59502 3.03073 3.37173 3.44896 3.71070 3.89003 3.93489 4.04632 4.14985 4.18438 4.27249 4.28739 4.31940 4.32715 4.41195 4.48166 4.63826 4.65638 4.69292 4.72043 4.76294 4.89419 4.93745 5.01867 5.08180 5.14508 5.17035 5.31386 5.39604 5.47764 5.58874 5.65701 5.74788 5.81363 5.96744 6.26559 6.34784 6.36205 6.97454 7.07508 7.42267 8.15942 8.42364 9.35556 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015685 B = 0.002675 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.695791 B =10463.449168 C =11294.826399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C -0.137 4.137 4 C 0.184 3.816 5 H 0.031 0.969 6 C -0.118 4.118 7 C 0.130 3.870 8 N -0.607 5.607 9 C 0.065 3.935 10 C 0.490 3.510 11 O -0.578 6.578 12 C 0.103 3.897 13 N -0.569 5.569 14 C 0.517 3.483 15 O -0.499 6.499 16 C 0.076 3.924 17 N -0.708 5.708 18 C 0.698 3.302 19 O -0.586 6.586 20 N -0.725 5.725 21 C -0.214 4.214 22 H 0.070 0.930 23 C -0.072 4.072 24 N -0.966 5.966 25 Si 0.955 3.045 26 H -0.291 1.291 27 H -0.299 1.299 28 H -0.276 1.276 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.143 0.857 44 H 0.152 0.848 45 H 0.149 0.851 46 H 0.170 0.830 47 H 0.455 0.545 48 H 0.374 0.626 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.032 15.224 2.296 27.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.194 4.194 4 C 0.075 3.925 5 H 0.049 0.951 6 C -0.157 4.157 7 C 0.007 3.993 8 N -0.339 5.339 9 C -0.077 4.077 10 C 0.278 3.722 11 O -0.457 6.457 12 C -0.022 4.022 13 N -0.314 5.314 14 C 0.306 3.694 15 O -0.370 6.370 16 C -0.050 4.050 17 N -0.373 5.373 18 C 0.399 3.601 19 O -0.463 6.463 20 N -0.365 5.365 21 C -0.346 4.346 22 H 0.088 0.912 23 C -0.264 4.264 24 N -0.617 5.617 25 Si 0.786 3.214 26 H -0.218 1.218 27 H -0.225 1.225 28 H -0.201 1.201 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.122 0.878 43 H 0.160 0.840 44 H 0.169 0.831 45 H 0.167 0.833 46 H 0.187 0.813 47 H 0.302 0.698 48 H 0.207 0.793 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 22.388 15.301 2.369 27.221 hybrid contribution -1.293 -0.947 0.574 1.702 sum 21.096 14.354 2.943 25.686 Atomic orbital electron populations 1.21749 0.95918 1.01717 0.99912 1.21635 0.96010 0.95987 0.99052 1.21817 1.00685 0.95401 1.01533 1.20335 0.91526 0.85448 0.95200 0.95135 1.22010 0.95519 1.00901 0.97276 1.21264 0.78440 1.01707 0.97855 1.47987 1.06889 1.18620 1.60380 1.22191 0.97872 0.87511 1.00120 1.21379 0.91281 0.82300 0.77260 1.90682 1.70980 1.35883 1.48191 1.21655 0.89975 0.86817 1.03780 1.46015 1.60823 1.15137 1.09472 1.21680 0.75018 0.83778 0.88876 1.90820 1.51268 1.80548 1.14384 1.22730 1.08249 0.94651 0.79375 1.45328 1.69636 1.10393 1.11932 1.16015 0.77774 0.84648 0.81677 1.90999 1.59125 1.46478 1.49679 1.42527 1.17045 1.03499 1.73459 1.19433 0.93376 0.92052 1.29721 0.91236 1.25298 1.01284 0.96090 1.03774 1.69770 1.38177 0.99651 1.54141 0.85398 0.81295 0.76691 0.78014 1.21833 1.22549 1.20109 0.94232 0.92968 0.93047 0.92694 0.92592 0.91976 0.93381 0.91369 0.91476 0.90503 0.92889 0.90932 0.90274 0.87799 0.83972 0.83069 0.83329 0.81332 0.69774 0.79321 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 8.26 71.98 0.59 -4.53 16 2 C -0.11 -3.79 2.69 -10.79 -0.03 -3.82 16 3 C -0.14 -4.05 8.85 71.98 0.64 -3.41 16 4 C 0.18 7.31 2.02 44.99 0.09 7.40 16 5 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 6 C -0.12 -4.02 4.86 30.60 0.15 -3.87 16 7 C 0.13 4.52 5.29 86.38 0.46 4.98 16 8 N -0.61 -16.74 2.87 -846.76 -2.43 -19.17 16 9 C 0.06 1.19 10.24 127.77 1.31 2.49 16 10 C 0.49 14.24 7.74 87.66 0.68 14.92 16 11 O -0.58 -21.74 16.01 -3.04 -0.05 -21.79 16 12 C 0.10 2.03 4.73 85.63 0.41 2.43 16 13 N -0.57 -11.63 2.09 -777.19 -1.63 -13.25 16 14 C 0.52 9.05 8.32 87.94 0.73 9.78 16 15 O -0.50 -11.74 17.75 -2.87 -0.05 -11.80 16 16 C 0.08 0.48 7.97 85.76 0.68 1.17 16 17 N -0.71 -7.46 6.58 -480.29 -3.16 -10.62 16 18 C 0.70 14.89 8.62 179.44 1.55 16.43 16 19 O -0.59 -17.46 17.48 -3.84 -0.07 -17.53 16 20 N -0.73 -34.79 4.45 -322.94 -1.44 -36.23 16 21 C -0.21 -11.45 7.57 84.03 0.64 -10.81 16 22 H 0.07 3.70 7.40 -2.91 -0.02 3.67 16 23 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 24 N -0.97 -57.41 13.06 21.65 0.28 -57.13 16 25 Si 0.96 46.30 29.55 68.60 2.03 48.33 16 26 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 2.30 6.01 -2.39 -0.01 2.29 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.59 6.32 -2.39 -0.02 1.58 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 2.30 6.17 -2.39 -0.01 2.29 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.08 2.92 7.68 -2.39 -0.02 2.91 16 39 H 0.05 2.10 7.42 -2.39 -0.02 2.09 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.55 8.07 -2.39 -0.02 1.53 16 42 H 0.10 1.13 6.45 -2.39 -0.02 1.12 16 43 H 0.14 2.32 7.82 -2.38 -0.02 2.30 16 44 H 0.15 2.09 7.26 -2.39 -0.02 2.08 16 45 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.17 -0.29 8.14 -2.38 -0.02 -0.31 16 47 H 0.45 2.34 8.96 -92.72 -0.83 1.51 16 48 H 0.37 19.08 7.80 -92.71 -0.72 18.36 16 49 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -81.99 400.89 1.27 -80.72 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: -0.57 Total: 28.91 kcal Atomic # 6 Polarization: 21.19 SS G_CDS: 8.36 Total: 29.55 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -8.38 Total: -136.40 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.17 Total: -51.11 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -81.99 1.27 -80.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675141534.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.342 kcal (2) G-P(sol) polarization free energy of solvation -81.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds