Wall clock time and date at job start Sat Apr 11 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99691 * 2 1 4 4 H 1.48499 * 109.46860 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46966 * 300.00234 * 3 2 1 6 6 H 1.48498 * 109.47177 * 60.00407 * 3 2 1 7 7 C 1.38811 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00199 * 163.06567 * 7 2 1 9 9 N 1.36936 * 119.99827 * 343.06357 * 7 2 1 10 10 C 1.46926 * 120.63337 * 331.84938 * 9 7 2 11 11 C 1.53188 * 108.77885 * 233.59256 * 10 9 7 12 12 C 1.53045 * 109.31039 * 305.36074 * 11 10 9 13 13 N 1.46501 * 109.46080 * 181.38734 * 12 11 10 14 14 C 1.34774 * 120.00189 * 154.97903 * 13 12 11 15 15 O 1.21585 * 119.99690 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00107 * 180.02562 * 14 13 12 17 17 N 1.40106 * 119.99897 * 359.97438 * 16 14 13 18 18 C 1.34774 * 119.99897 * 180.02562 * 17 16 14 19 19 O 1.21287 * 120.00067 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.99979 * 179.97438 * 18 17 16 21 21 C 1.53181 * 109.54477 * 299.55383 * 20 18 17 22 22 C 1.53093 * 109.16390 * 183.15101 * 21 20 18 23 23 O 1.42900 * 109.41185 * 57.61160 * 22 21 20 24 24 C 1.42901 * 114.10251 * 298.83855 * 23 22 21 25 25 C 1.53099 * 109.41290 * 61.15838 * 24 23 22 26 26 C 1.53041 * 109.52469 * 61.37415 * 12 11 10 27 27 C 1.46926 * 120.63194 * 151.83427 * 9 7 2 28 28 H 0.96998 * 120.00210 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58806 * 113.80057 * 10 9 7 30 30 H 1.09004 * 109.70523 * 353.44565 * 10 9 7 31 31 H 1.09007 * 109.49554 * 185.41460 * 11 10 9 32 32 H 1.09000 * 109.52797 * 65.32875 * 11 10 9 33 33 H 1.08996 * 109.46119 * 301.36347 * 12 11 10 34 34 H 0.97000 * 119.99816 * 334.97405 * 13 12 11 35 35 H 0.96998 * 120.00054 * 179.97438 * 16 14 13 36 36 H 0.96998 * 120.00049 * 359.97438 * 17 16 14 37 37 H 1.08995 * 109.61524 * 59.78184 * 20 18 17 38 38 H 1.09000 * 109.52341 * 303.06364 * 21 20 18 39 39 H 1.09006 * 109.51659 * 63.24658 * 21 20 18 40 40 H 1.09001 * 109.48254 * 297.62938 * 22 21 20 41 41 H 1.09001 * 109.47621 * 177.59529 * 22 21 20 42 42 H 1.09003 * 109.48087 * 301.18042 * 24 23 22 43 43 H 1.08999 * 109.49313 * 181.14377 * 24 23 22 44 44 H 1.08991 * 109.52432 * 182.48593 * 25 24 23 45 45 H 1.09004 * 109.52126 * 62.29647 * 25 24 23 46 46 H 1.09010 * 109.49525 * 58.57556 * 26 12 11 47 47 H 1.08998 * 109.49996 * 178.67490 * 26 12 11 48 48 H 1.08995 * 109.58520 * 246.20088 * 27 9 7 49 49 H 1.09005 * 109.58374 * 6.47937 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2223 -0.2730 9 7 1.3701 -2.3625 0.3444 10 6 0.2262 -2.3408 1.2662 11 6 0.4977 -3.3206 2.4121 12 6 0.8122 -4.7020 1.8331 13 7 1.0399 -5.6494 2.9270 14 6 0.8361 -6.9671 2.7306 15 8 0.4628 -7.3694 1.6457 16 7 1.0450 -7.8387 3.7371 17 7 1.4746 -7.3750 4.9875 18 6 1.6841 -8.2466 5.9939 19 8 1.5002 -9.4324 5.8173 20 6 2.1468 -7.7480 7.3385 21 6 3.4976 -7.0419 7.1862 22 6 3.9966 -6.6085 8.5671 23 8 4.0940 -7.7527 9.4176 24 6 2.8523 -8.4258 9.6348 25 6 2.3073 -8.9322 8.2968 26 6 2.0677 -4.6177 0.9619 27 6 1.8139 -3.6528 -0.2005 28 1 -0.4850 0.8400 0.0004 29 1 -0.6769 -2.6411 0.7350 30 1 0.0968 -1.3358 1.6679 31 1 -0.3829 -3.3860 3.0512 32 1 1.3472 -2.9697 2.9980 33 1 -0.0279 -5.0416 1.2273 34 1 1.3374 -5.3284 3.7926 35 1 0.8980 -8.7870 3.5959 36 1 1.6220 -6.4267 5.1286 37 1 1.4136 -7.0495 7.7418 38 1 4.2175 -7.7260 6.7369 39 1 3.3804 -6.1650 6.5494 40 1 3.2964 -5.8933 8.9987 41 1 4.9776 -6.1434 8.4695 42 1 2.1371 -7.7344 10.0803 43 1 3.0088 -9.2699 10.3064 44 1 1.3390 -9.4072 8.4542 45 1 3.0032 -9.6544 7.8698 46 1 2.9025 -4.2540 1.5612 47 1 2.3048 -5.6062 0.5688 48 1 1.0403 -4.0600 -0.8514 49 1 2.7333 -3.5125 -0.7691 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678403848.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:57 Heat of formation + Delta-G solvation = -59.842087 kcal Electronic energy + Delta-G solvation = -30183.046673 eV Core-core repulsion = 25953.949124 eV Total energy + Delta-G solvation = -4229.097550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.08026 -40.08178 -38.94729 -37.54054 -35.95219 -34.52189 -34.35463 -32.18674 -31.72220 -30.95119 -30.14027 -29.30555 -26.35911 -25.10870 -24.08111 -22.60782 -22.34092 -22.15673 -20.86547 -20.58298 -19.76623 -18.84008 -18.11656 -17.08848 -16.67353 -16.52186 -16.30915 -15.77757 -15.56528 -15.32424 -15.14629 -14.86216 -14.63229 -14.39771 -14.14084 -13.79311 -13.72859 -13.60406 -13.07083 -12.93169 -12.80136 -12.43136 -12.12438 -11.87922 -11.65116 -11.51618 -11.33973 -11.20168 -11.04577 -10.98116 -10.78485 -10.65235 -10.55286 -10.38413 -10.30294 -10.09769 -9.99764 -9.84101 -9.62657 -9.00015 -8.56803 -8.48322 -6.74231 -5.84857 -3.27214 1.54238 2.01382 2.93475 3.07770 3.32802 3.37650 3.41275 3.43226 3.78342 4.01571 4.14578 4.39909 4.44826 4.53530 4.67751 4.72766 4.89859 4.95628 5.02412 5.18993 5.23439 5.23773 5.32147 5.41491 5.44487 5.51060 5.52514 5.72698 5.77736 5.98242 6.10531 6.14285 6.21470 6.25396 6.47406 6.49571 6.57503 6.68001 6.74394 6.81986 6.94728 7.00538 7.24180 7.41340 7.55967 7.75065 8.00496 8.38989 8.41602 9.15417 9.78398 10.35259 11.24158 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.002317 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.358516 B =12080.702420 C =13498.396410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.166 3.834 13 N -0.736 5.736 14 C 0.710 3.290 15 O -0.568 6.568 16 N -0.539 5.539 17 N -0.526 5.526 18 C 0.520 3.480 19 O -0.532 6.532 20 C -0.099 4.099 21 C -0.152 4.152 22 C 0.062 3.938 23 O -0.381 6.381 24 C 0.060 3.940 25 C -0.136 4.136 26 C -0.140 4.140 27 C 0.147 3.853 28 H 0.254 0.746 29 H 0.022 0.978 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.385 0.615 35 H 0.439 0.561 36 H 0.420 0.580 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.101 0.899 42 H 0.053 0.947 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.021 0.979 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.521 -13.689 20.217 24.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.063 3.937 13 N -0.391 5.391 14 C 0.410 3.590 15 O -0.441 6.441 16 N -0.297 5.297 17 N -0.278 5.278 18 C 0.306 3.694 19 O -0.406 6.406 20 C -0.122 4.122 21 C -0.191 4.191 22 C -0.015 4.015 23 O -0.300 6.300 24 C -0.016 4.016 25 C -0.174 4.174 26 C -0.181 4.181 27 C 0.020 3.980 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.218 0.782 35 H 0.285 0.715 36 H 0.261 0.739 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.039 0.961 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.177 -14.564 19.271 24.513 hybrid contribution 0.219 1.206 0.254 1.252 sum 4.395 -13.358 19.525 24.062 Atomic orbital electron populations 1.70030 1.05252 1.25473 1.53984 1.25065 0.95302 0.98463 1.00862 0.86227 0.79358 0.83911 0.77298 1.20260 1.21699 1.21570 1.19229 0.92618 0.84684 1.41609 0.91564 1.44109 1.35794 1.01706 1.49934 1.20742 0.88996 0.97856 0.87637 1.22566 1.00511 0.94570 1.01001 1.21038 0.98717 0.87450 0.86529 1.45624 1.72453 1.04881 1.16122 1.15834 0.78883 0.81490 0.82834 1.91040 1.53920 1.77059 1.22098 1.44737 1.73760 1.10657 1.00529 1.44968 1.69214 1.10402 1.03173 1.20812 0.77471 0.86208 0.84903 1.90751 1.51333 1.15895 1.82605 1.21356 0.98996 0.99999 0.91861 1.22296 0.95747 1.01384 0.99630 1.22589 1.02543 0.87826 0.88498 1.87976 1.31179 1.42884 1.67960 1.22645 0.86109 0.96991 0.95898 1.22059 1.03539 0.96818 0.94992 1.22408 0.97041 0.99710 0.98902 1.20881 0.98039 0.86477 0.92609 0.93616 0.95992 0.88925 0.92678 0.92162 0.89672 0.78177 0.71490 0.73883 0.87603 0.89892 0.89982 0.92560 0.88112 0.92833 0.88255 0.89802 0.89823 0.92341 0.92568 0.96060 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.42 11.19 55.49 0.62 -24.80 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.67 9.58 -15.06 -0.14 -6.82 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.26 2.99 -172.32 -0.52 -14.78 16 10 C 0.17 3.90 5.30 -3.71 -0.02 3.88 16 11 C -0.15 -2.46 5.55 -26.61 -0.15 -2.61 16 12 C 0.17 2.70 2.42 -67.89 -0.16 2.54 16 13 N -0.74 -9.38 5.04 -58.63 -0.30 -9.68 16 14 C 0.71 10.16 8.64 -86.92 -0.75 9.41 16 15 O -0.57 -10.56 16.84 5.29 0.09 -10.47 16 16 N -0.54 -6.18 6.26 27.63 0.17 -6.00 16 17 N -0.53 -4.32 6.17 31.22 0.19 -4.12 16 18 C 0.52 4.54 7.27 -10.99 -0.08 4.46 16 19 O -0.53 -6.63 15.81 5.55 0.09 -6.54 16 20 C -0.10 -0.55 2.61 -91.59 -0.24 -0.79 16 21 C -0.15 -0.73 5.30 -26.59 -0.14 -0.87 16 22 C 0.06 0.31 6.84 37.21 0.25 0.56 16 23 O -0.38 -2.76 10.76 -35.23 -0.38 -3.14 16 24 C 0.06 0.32 6.84 37.21 0.25 0.57 16 25 C -0.14 -0.84 4.73 -26.59 -0.13 -0.96 16 26 C -0.14 -2.44 5.65 -26.61 -0.15 -2.59 16 27 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 28 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 2.31 6.07 -51.93 -0.31 2.00 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 34 H 0.38 3.61 6.52 -40.82 -0.27 3.34 16 35 H 0.44 5.28 8.10 -182.59 -1.48 3.80 16 36 H 0.42 2.34 6.22 -182.59 -1.14 1.20 16 37 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.25 7.70 -51.93 -0.40 -0.15 16 40 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.66 8.02 -51.93 -0.42 0.24 16 46 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -33.84 388.33 -10.63 -44.47 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -9.86 Total: 3.50 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -1.56 Total: 9.76 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.18 Total: -59.38 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.20 Total: -20.16 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.84 -10.63 -44.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678403848.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.373 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds