Wall clock time and date at job start Sat Apr 11 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86799 * 120.00226 * 2 1 4 4 H 1.48494 * 109.47162 * 269.99883 * 3 2 1 5 5 H 1.48504 * 109.47180 * 30.00175 * 3 2 1 6 6 H 1.48507 * 109.47049 * 149.99671 * 3 2 1 7 7 C 1.38949 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99856 * 359.97438 * 7 2 1 9 9 N 1.37100 * 120.00481 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99918 * 179.97438 * 9 7 2 11 11 O 1.21282 * 120.00341 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99618 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47313 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 10 15 15 O 1.21579 * 119.99978 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99908 * 179.97438 * 14 13 12 17 17 C 1.46494 * 119.99635 * 179.97438 * 16 14 13 18 18 C 1.53120 * 109.52351 * 274.87339 * 17 16 14 19 19 C 1.53040 * 109.27608 * 182.50857 * 18 17 16 20 20 N 1.46847 * 109.57741 * 59.08523 * 19 18 17 21 21 C 1.46907 * 111.00093 * 174.19723 * 20 19 18 22 22 H 1.08995 * 110.43677 * 73.11491 * 21 20 19 23 23 C 1.54811 * 110.48572 * 310.42576 * 21 20 19 24 24 C 1.54995 * 102.09213 * 220.44729 * 23 21 20 25 25 O 1.44379 * 103.49171 * 37.02290 * 24 23 21 26 26 C 1.43746 * 106.97568 * 319.94230 * 25 24 23 27 27 C 1.46851 * 111.19624 * 298.28564 * 20 19 18 28 28 C 1.53042 * 109.51858 * 61.74468 * 27 20 19 29 29 H 0.97002 * 119.99874 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99819 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47247 * 60.00376 * 12 10 9 32 32 H 1.09004 * 109.47103 * 300.00254 * 12 10 9 33 33 H 0.96999 * 119.99694 * 359.97438 * 13 12 10 34 34 H 0.96995 * 120.00015 * 359.72369 * 16 14 13 35 35 H 1.08998 * 109.52559 * 35.00175 * 17 16 14 36 36 H 1.09001 * 109.50331 * 302.37986 * 18 17 16 37 37 H 1.09002 * 109.50766 * 62.50124 * 18 17 16 38 38 H 1.08997 * 109.41202 * 299.06740 * 19 18 17 39 39 H 1.09002 * 109.45706 * 179.12376 * 19 18 17 40 40 H 1.09003 * 110.90790 * 338.64431 * 23 21 20 41 41 H 1.08995 * 110.90571 * 102.24354 * 23 21 20 42 42 H 1.08998 * 110.61659 * 278.51987 * 24 23 21 43 43 H 1.09003 * 110.61627 * 155.52819 * 24 23 21 44 44 H 1.09005 * 109.87607 * 267.09270 * 26 25 24 45 45 H 1.08996 * 110.00357 * 146.00525 * 26 25 24 46 46 H 1.09001 * 109.46650 * 301.72889 * 27 20 19 47 47 H 1.09001 * 109.45245 * 181.75284 * 27 20 19 48 48 H 1.09004 * 109.50212 * 180.87605 * 28 27 20 49 49 H 1.08997 * 109.50423 * 60.76166 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3707 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5606 -2.3707 0.0011 13 7 6.0489 -3.7519 0.0017 14 6 7.3740 -3.9982 0.0023 15 8 8.1641 -3.0741 0.0019 16 7 7.8232 -5.2690 0.0034 17 6 9.2635 -5.5366 0.0035 18 6 9.7889 -5.5109 -1.4345 19 6 11.2806 -5.8527 -1.4336 20 7 11.4804 -7.1822 -0.8429 21 6 12.8845 -7.6007 -0.9508 22 1 13.5034 -7.0409 -0.2497 23 6 13.3961 -7.4123 -2.3998 24 6 14.2485 -8.6893 -2.6117 25 8 13.5059 -9.7101 -1.9110 26 6 13.0168 -9.1149 -0.6974 27 6 11.0271 -7.2164 0.5535 28 6 9.5274 -6.9169 0.6117 29 1 -0.4850 0.8401 0.0004 30 1 3.8648 -0.3634 -0.0004 31 1 5.9240 -1.8561 0.8906 32 1 5.9239 -1.8576 -0.8894 33 1 5.4186 -4.4891 0.0024 34 1 7.1929 -6.0062 0.0078 35 1 9.7755 -4.7753 0.5921 36 1 9.2488 -6.2449 -2.0325 37 1 9.6426 -4.5171 -1.8577 38 1 11.8221 -5.1099 -0.8478 39 1 11.6543 -5.8504 -2.4575 40 1 12.5651 -7.3779 -3.1043 41 1 14.0110 -6.5161 -2.4816 42 1 15.2391 -8.5666 -2.1739 43 1 14.3236 -8.9290 -3.6724 44 1 13.7223 -9.2946 0.1139 45 1 12.0438 -9.5345 -0.4421 46 1 11.5697 -6.4672 1.1300 47 1 11.2166 -8.2046 0.9725 48 1 9.1943 -6.9270 1.6495 49 1 8.9830 -7.6736 0.0468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680957207.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:01 Heat of formation + Delta-G solvation = -99.780665 kcal Electronic energy + Delta-G solvation = -29288.852168 eV Core-core repulsion = 25058.022752 eV Total energy + Delta-G solvation = -4230.829416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.61525 -39.91553 -38.67311 -38.09594 -35.32182 -34.45588 -33.73216 -32.48849 -31.79952 -31.47863 -30.40797 -28.72797 -27.48789 -24.63286 -24.12996 -23.60997 -22.37846 -21.04925 -20.65613 -20.26989 -19.64812 -18.81477 -18.05754 -17.50172 -16.81561 -16.41201 -15.82042 -15.60746 -15.53707 -15.35118 -15.04010 -14.97008 -14.54771 -14.34468 -14.28327 -14.06670 -13.66531 -13.55528 -13.25868 -13.11286 -12.74480 -12.48854 -12.44044 -12.18166 -12.16220 -11.94655 -11.80417 -11.58233 -11.48512 -11.43538 -11.24348 -11.02756 -10.76332 -10.64562 -10.12473 -10.07786 -10.05194 -9.70076 -9.20500 -8.79805 -8.76943 -8.69089 -8.30669 -6.41069 -3.93652 2.72681 2.99410 3.04101 3.12280 3.28086 3.31770 3.50374 3.57624 3.94570 4.03231 4.23276 4.38509 4.42236 4.56236 4.59018 4.61063 4.68944 4.74395 4.83380 4.86292 4.99267 5.12204 5.14039 5.19687 5.21221 5.24774 5.27834 5.32579 5.36764 5.44110 5.54752 5.61120 5.66084 5.71583 5.79031 5.85238 5.86590 6.04659 6.38936 6.49447 6.61197 6.63630 6.64408 7.04536 7.44795 8.00124 8.17526 8.44223 8.72979 8.81532 9.29667 9.63439 10.71109 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.036146 B = 0.001628 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.460824 B =17195.276371 C =17483.922131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.438 3.562 11 O -0.579 6.579 12 C 0.126 3.874 13 N -0.725 5.725 14 C 0.706 3.294 15 O -0.599 6.599 16 N -0.744 5.744 17 C 0.165 3.835 18 C -0.128 4.128 19 C 0.056 3.944 20 N -0.528 5.528 21 C 0.049 3.951 22 H 0.057 0.943 23 C -0.153 4.153 24 C 0.048 3.952 25 O -0.375 6.375 26 C 0.055 3.945 27 C 0.058 3.942 28 C -0.124 4.124 29 H 0.275 0.725 30 H 0.374 0.626 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.408 0.592 34 H 0.397 0.603 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.038 0.962 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.838 -14.327 -1.511 32.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.463 6.463 12 C -0.002 4.002 13 N -0.383 5.383 14 C 0.406 3.594 15 O -0.479 6.479 16 N -0.399 5.399 17 C 0.060 3.940 18 C -0.167 4.167 19 C -0.072 4.072 20 N -0.254 5.254 21 C -0.060 4.060 22 H 0.075 0.925 23 C -0.191 4.191 24 C -0.029 4.029 25 O -0.293 6.293 26 C -0.022 4.022 27 C -0.071 4.071 28 C -0.162 4.162 29 H 0.086 0.914 30 H 0.208 0.792 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.245 0.755 34 H 0.231 0.769 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.056 0.944 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 28.579 -14.567 -1.831 32.130 hybrid contribution 0.422 1.636 0.582 1.787 sum 29.001 -12.931 -1.249 31.778 Atomic orbital electron populations 1.69616 1.05714 1.27802 1.48206 1.25059 0.95526 0.98156 0.97135 0.86673 0.79921 0.83771 0.79139 1.19394 1.19991 1.19215 1.19442 0.78974 0.96795 1.48678 0.86096 1.42115 1.07681 1.06135 1.65490 1.19663 0.88114 0.84861 0.84921 1.90532 1.69262 1.30925 1.55627 1.20792 0.93309 0.82953 1.03164 1.44764 1.05269 1.09280 1.78951 1.15855 0.82509 0.83290 0.77770 1.90890 1.55168 1.43195 1.58601 1.45110 1.07631 1.06269 1.80876 1.20780 0.80105 0.96779 0.96353 1.22024 0.94685 1.02580 0.97407 1.22122 0.96741 0.88187 1.00114 1.62095 1.17949 1.27510 1.17835 1.23048 0.89217 0.96463 0.97222 0.92526 1.23317 1.00555 0.98853 0.96345 1.23520 0.94537 0.86762 0.98103 1.88903 1.70896 1.35053 1.34455 1.23216 1.00027 0.91518 0.87425 1.22068 0.95216 1.01406 0.88379 1.21869 0.96005 0.96660 1.01696 0.91393 0.79242 0.89956 0.89936 0.75462 0.76882 0.89775 0.90801 0.90556 0.94542 0.90034 0.88999 0.90170 0.92249 0.88766 0.92428 0.88750 0.94352 0.90136 0.90539 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.92 13.96 55.50 0.77 -24.15 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.97 27.74 -169.99 -4.71 14.25 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 7 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 8 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 9 N -0.58 -13.37 5.09 -10.96 -0.06 -13.43 16 10 C 0.44 9.61 7.85 -10.99 -0.09 9.52 16 11 O -0.58 -14.54 15.24 5.56 0.08 -14.46 16 12 C 0.13 2.20 6.15 -5.20 -0.03 2.17 16 13 N -0.73 -11.50 5.53 -66.42 -0.37 -11.87 16 14 C 0.71 10.73 8.53 -86.91 -0.74 9.99 16 15 O -0.60 -10.96 16.01 5.30 0.08 -10.88 16 16 N -0.74 -8.26 5.09 -58.56 -0.30 -8.56 16 17 C 0.17 1.60 2.52 -67.81 -0.17 1.43 16 18 C -0.13 -1.20 5.68 -26.65 -0.15 -1.35 16 19 C 0.06 0.44 5.12 -3.83 -0.02 0.42 16 20 N -0.53 -3.77 4.42 -224.85 -0.99 -4.77 16 21 C 0.05 0.31 2.80 -66.18 -0.19 0.12 16 22 H 0.06 0.33 8.11 -51.93 -0.42 -0.09 16 23 C -0.15 -0.86 5.50 -24.72 -0.14 -0.99 16 24 C 0.05 0.28 7.72 38.21 0.29 0.57 16 25 O -0.37 -3.29 11.52 -35.23 -0.41 -3.69 16 26 C 0.06 0.38 6.92 37.73 0.26 0.64 16 27 C 0.06 0.37 5.28 -3.83 -0.02 0.35 16 28 C -0.12 -0.88 5.57 -26.65 -0.15 -1.03 16 29 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.41 6.33 7.45 -40.82 -0.30 6.02 16 34 H 0.40 3.58 8.62 -40.82 -0.35 3.22 16 35 H 0.08 0.98 7.58 -51.93 -0.39 0.59 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.57 6.06 -51.93 -0.31 0.26 16 40 H 0.09 0.60 6.97 -51.93 -0.36 0.23 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 0.66 7.14 -51.93 -0.37 0.29 16 46 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.08 0.43 6.95 -51.93 -0.36 0.07 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -33.46 388.67 -9.16 -42.62 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -7.74 Total: 14.81 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: -1.38 Total: 14.26 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.94 Total: -62.77 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.24 Total: -29.03 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.46 -9.16 -42.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680957207.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.162 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds