Wall clock time and date at job start Sat Apr 11 2020 06:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86799 * 120.00226 * 2 1 4 4 H 1.48494 * 109.47162 * 269.99883 * 3 2 1 5 5 H 1.48504 * 109.47180 * 30.00175 * 3 2 1 6 6 H 1.48507 * 109.47049 * 149.99671 * 3 2 1 7 7 C 1.38949 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99856 * 359.97438 * 7 2 1 9 9 N 1.37100 * 120.00481 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99918 * 179.97438 * 9 7 2 11 11 O 1.21282 * 120.00341 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99618 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47313 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 10 15 15 O 1.21579 * 119.99978 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99908 * 179.97438 * 14 13 12 17 17 C 1.46494 * 119.99635 * 179.97438 * 16 14 13 18 18 C 1.53120 * 109.52351 * 274.87339 * 17 16 14 19 19 C 1.53040 * 109.27608 * 182.50857 * 18 17 16 20 20 N 1.46847 * 109.57741 * 59.08523 * 19 18 17 21 21 C 1.46907 * 111.00093 * 174.19723 * 20 19 18 22 22 H 1.08995 * 110.43677 * 73.11491 * 21 20 19 23 23 C 1.54811 * 110.48572 * 310.42576 * 21 20 19 24 24 C 1.54995 * 102.09213 * 220.44729 * 23 21 20 25 25 O 1.44379 * 103.49171 * 37.02290 * 24 23 21 26 26 C 1.43746 * 106.97568 * 319.94230 * 25 24 23 27 27 C 1.46851 * 111.19624 * 298.28564 * 20 19 18 28 28 C 1.53042 * 109.51858 * 61.74468 * 27 20 19 29 29 H 0.97002 * 119.99874 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99819 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47247 * 60.00376 * 12 10 9 32 32 H 1.09004 * 109.47103 * 300.00254 * 12 10 9 33 33 H 0.96999 * 119.99694 * 359.97438 * 13 12 10 34 34 H 0.96995 * 120.00015 * 359.72369 * 16 14 13 35 35 H 1.08998 * 109.52559 * 35.00175 * 17 16 14 36 36 H 1.09001 * 109.50331 * 302.37986 * 18 17 16 37 37 H 1.09002 * 109.50766 * 62.50124 * 18 17 16 38 38 H 1.08997 * 109.41202 * 299.06740 * 19 18 17 39 39 H 1.09002 * 109.45706 * 179.12376 * 19 18 17 40 40 H 1.09003 * 110.90790 * 338.64431 * 23 21 20 41 41 H 1.08995 * 110.90571 * 102.24354 * 23 21 20 42 42 H 1.08998 * 110.61659 * 278.51987 * 24 23 21 43 43 H 1.09003 * 110.61627 * 155.52819 * 24 23 21 44 44 H 1.09005 * 109.87607 * 267.09270 * 26 25 24 45 45 H 1.08996 * 110.00357 * 146.00525 * 26 25 24 46 46 H 1.09001 * 109.46650 * 301.72889 * 27 20 19 47 47 H 1.09001 * 109.45245 * 181.75284 * 27 20 19 48 48 H 1.09004 * 109.50212 * 180.87605 * 28 27 20 49 49 H 1.08997 * 109.50423 * 60.76166 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3707 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5606 -2.3707 0.0011 13 7 6.0489 -3.7519 0.0017 14 6 7.3740 -3.9982 0.0023 15 8 8.1641 -3.0741 0.0019 16 7 7.8232 -5.2690 0.0034 17 6 9.2635 -5.5366 0.0035 18 6 9.7889 -5.5109 -1.4345 19 6 11.2806 -5.8527 -1.4336 20 7 11.4804 -7.1822 -0.8429 21 6 12.8845 -7.6007 -0.9508 22 1 13.5034 -7.0409 -0.2497 23 6 13.3961 -7.4123 -2.3998 24 6 14.2485 -8.6893 -2.6117 25 8 13.5059 -9.7101 -1.9110 26 6 13.0168 -9.1149 -0.6974 27 6 11.0271 -7.2164 0.5535 28 6 9.5274 -6.9169 0.6117 29 1 -0.4850 0.8401 0.0004 30 1 3.8648 -0.3634 -0.0004 31 1 5.9240 -1.8561 0.8906 32 1 5.9239 -1.8576 -0.8894 33 1 5.4186 -4.4891 0.0024 34 1 7.1929 -6.0062 0.0078 35 1 9.7755 -4.7753 0.5921 36 1 9.2488 -6.2449 -2.0325 37 1 9.6426 -4.5171 -1.8577 38 1 11.8221 -5.1099 -0.8478 39 1 11.6543 -5.8504 -2.4575 40 1 12.5651 -7.3779 -3.1043 41 1 14.0110 -6.5161 -2.4816 42 1 15.2391 -8.5666 -2.1739 43 1 14.3236 -8.9290 -3.6724 44 1 13.7223 -9.2946 0.1139 45 1 12.0438 -9.5345 -0.4421 46 1 11.5697 -6.4672 1.1300 47 1 11.2166 -8.2046 0.9725 48 1 9.1943 -6.9270 1.6495 49 1 8.9830 -7.6736 0.0468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680957207.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:00 Heat of formation + Delta-G solvation = -128.018156 kcal Electronic energy + Delta-G solvation = -29290.076638 eV Core-core repulsion = 25058.022752 eV Total energy + Delta-G solvation = -4232.053886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46773 -40.84845 -40.18635 -38.99439 -36.35681 -36.05559 -35.27320 -33.84009 -33.21651 -32.11629 -31.01853 -29.57315 -28.73228 -26.27388 -24.81466 -24.44152 -22.91561 -21.87441 -21.56627 -21.44966 -20.95233 -20.56830 -19.39874 -18.15515 -17.55604 -17.34729 -17.23632 -16.85826 -16.71170 -16.33178 -16.01170 -15.84306 -15.75931 -15.61448 -15.21788 -14.92901 -14.86415 -14.60739 -14.36608 -14.17194 -13.98616 -13.74731 -13.66011 -13.30374 -13.04205 -12.96587 -12.51166 -12.44444 -12.32479 -12.17663 -12.08361 -12.00065 -11.93429 -11.71245 -11.57807 -11.46622 -11.31636 -10.64891 -10.60190 -10.38285 -10.30885 -9.80391 -9.33369 -8.45334 -6.07318 1.31404 1.34370 1.43933 1.59948 1.79371 2.13093 2.20734 2.74093 2.80020 3.04740 3.11066 3.29425 3.47894 3.72173 3.90033 3.96298 4.00320 4.08129 4.16717 4.23419 4.25319 4.36971 4.38818 4.40926 4.45178 4.46474 4.62823 4.68158 4.73467 4.80197 4.83862 4.86891 4.88517 4.98441 5.05892 5.09868 5.16677 5.26749 5.32083 5.49028 5.58076 5.88537 5.91054 5.96680 6.06008 6.12826 6.49198 6.78473 7.03876 7.29024 7.54571 7.78668 8.71082 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.036146 B = 0.001628 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.460824 B =17195.276371 C =17483.922131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.007 4.007 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.332 4.332 8 H 0.063 0.937 9 N -0.578 5.578 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.139 3.861 13 N -0.728 5.728 14 C 0.706 3.294 15 O -0.629 6.629 16 N -0.729 5.729 17 C 0.164 3.836 18 C -0.122 4.122 19 C 0.063 3.937 20 N -0.534 5.534 21 C 0.050 3.950 22 H 0.065 0.935 23 C -0.150 4.150 24 C 0.044 3.956 25 O -0.403 6.403 26 C 0.055 3.945 27 C 0.058 3.942 28 C -0.115 4.115 29 H 0.281 0.719 30 H 0.392 0.608 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.410 0.590 34 H 0.409 0.591 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.033 0.967 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.039 0.961 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.852 -13.709 -1.278 34.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.461 4.461 8 H 0.081 0.919 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.500 6.500 12 C 0.010 3.990 13 N -0.385 5.385 14 C 0.406 3.594 15 O -0.511 6.511 16 N -0.384 5.384 17 C 0.059 3.941 18 C -0.161 4.161 19 C -0.066 4.066 20 N -0.260 5.260 21 C -0.059 4.059 22 H 0.083 0.917 23 C -0.188 4.188 24 C -0.032 4.032 25 O -0.322 6.322 26 C -0.022 4.022 27 C -0.070 4.070 28 C -0.153 4.153 29 H 0.091 0.909 30 H 0.228 0.772 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.247 0.753 34 H 0.245 0.755 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.057 0.943 47 H 0.114 0.886 48 H 0.103 0.897 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 31.624 -14.001 -1.596 34.622 hybrid contribution -0.522 1.273 0.495 1.462 sum 31.102 -12.728 -1.102 33.623 Atomic orbital electron populations 1.69778 1.08033 1.29443 1.49287 1.26055 0.96416 1.02562 0.95695 0.85449 0.79584 0.77051 0.80066 1.18102 1.19829 1.15592 1.19035 0.80984 0.95276 1.50813 0.91858 1.41915 1.06109 1.07427 1.66329 1.20514 0.90067 0.83853 0.82247 1.90521 1.70805 1.32316 1.56358 1.20672 0.89152 0.84284 1.04844 1.44731 1.05688 1.08729 1.79390 1.15936 0.81799 0.84123 0.77541 1.90870 1.55690 1.44464 1.60075 1.45071 1.08650 1.05268 1.79395 1.20903 0.78797 0.97823 0.96534 1.21922 0.96032 1.01230 0.96899 1.22029 0.95336 0.88551 1.00637 1.62083 1.18780 1.26885 1.18235 1.23073 0.88715 0.96254 0.97817 0.91680 1.23299 1.00393 0.99417 0.95654 1.23676 0.94878 0.86185 0.98470 1.88869 1.71478 1.36531 1.35360 1.23274 1.00131 0.91593 0.87249 1.22111 0.94525 1.02272 0.88134 1.21816 0.96720 0.94791 1.01982 0.90931 0.77233 0.88172 0.88130 0.75297 0.75470 0.91584 0.90873 0.92792 0.94837 0.89344 0.90011 0.88729 0.90926 0.88110 0.91174 0.89257 0.94309 0.88627 0.89683 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 13.96 21.66 0.30 -53.99 16 2 C -0.01 -0.39 5.50 84.93 0.47 0.07 16 3 Si 0.96 38.00 27.74 68.60 1.90 39.91 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 7 C -0.33 -18.83 10.16 84.04 0.85 -17.97 16 8 H 0.06 4.24 7.39 -2.91 -0.02 4.22 16 9 N -0.58 -26.49 5.09 -306.99 -1.56 -28.05 16 10 C 0.45 19.35 7.85 87.66 0.69 20.04 16 11 O -0.61 -31.45 15.24 -3.04 -0.05 -31.50 16 12 C 0.14 4.57 6.15 85.63 0.53 5.09 16 13 N -0.73 -22.15 5.53 -482.30 -2.67 -24.82 16 14 C 0.71 20.56 8.53 179.05 1.53 22.09 16 15 O -0.63 -22.25 16.01 -3.96 -0.06 -22.31 16 16 N -0.73 -15.26 5.09 -457.44 -2.33 -17.59 16 17 C 0.16 2.99 2.52 45.07 0.11 3.10 16 18 C -0.12 -2.18 5.68 30.65 0.17 -2.00 16 19 C 0.06 0.89 5.12 86.33 0.44 1.33 16 20 N -0.53 -6.69 4.42 -865.30 -3.82 -10.52 16 21 C 0.05 0.53 2.80 45.90 0.13 0.66 16 22 H 0.07 0.60 8.11 -2.39 -0.02 0.58 16 23 C -0.15 -1.42 5.50 31.89 0.18 -1.25 16 24 C 0.04 0.45 7.72 72.66 0.56 1.01 16 25 O -0.40 -6.58 11.52 -148.98 -1.72 -8.30 16 26 C 0.05 0.65 6.92 72.35 0.50 1.15 16 27 C 0.06 0.63 5.28 86.33 0.46 1.08 16 28 C -0.11 -1.40 5.57 30.65 0.17 -1.23 16 29 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.39 15.09 5.76 -92.71 -0.53 14.55 16 31 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 33 H 0.41 12.39 7.45 -92.71 -0.69 11.70 16 34 H 0.41 6.73 8.62 -92.71 -0.80 5.94 16 35 H 0.07 1.48 7.58 -2.39 -0.02 1.47 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.09 1.13 6.06 -2.39 -0.01 1.11 16 40 H 0.08 0.95 6.97 -2.39 -0.02 0.94 16 41 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.09 1.12 7.14 -2.39 -0.02 1.10 16 46 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.10 0.79 6.95 -2.39 -0.02 0.77 16 48 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -75.48 388.67 -4.31 -79.79 By element: Atomic # 1 Polarization: 45.30 SS G_CDS: -1.09 Total: 44.21 kcal Atomic # 6 Polarization: 26.39 SS G_CDS: 6.79 Total: 33.17 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -10.08 Total: -134.97 kcal Atomic # 8 Polarization: -60.28 SS G_CDS: -1.83 Total: -62.11 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 1.90 Total: 39.91 kcal Total: -75.48 -4.31 -79.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680957207.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.228 kcal (2) G-P(sol) polarization free energy of solvation -75.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds