Wall clock time and date at job start Sat Apr 11 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86802 * 120.00278 * 2 1 4 4 H 1.48493 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47037 * 300.00231 * 3 2 1 6 6 H 1.48500 * 109.46568 * 60.00046 * 3 2 1 7 7 C 1.38958 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99460 * 179.97438 * 7 2 1 9 9 N 1.37089 * 119.99894 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99786 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00103 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00251 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47420 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00433 * 179.97438 * 13 12 10 15 15 O 1.21588 * 119.99579 * 0.02562 * 14 13 12 16 16 N 1.34767 * 120.00369 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00363 * 180.02562 * 16 14 13 18 18 C 1.53118 * 109.52654 * 154.99958 * 17 16 14 19 19 C 1.53039 * 109.27884 * 177.56415 * 18 17 16 20 20 N 1.46848 * 109.52089 * 300.81841 * 19 18 17 21 21 C 1.46899 * 111.00098 * 185.84287 * 20 19 18 22 22 H 1.09004 * 110.45349 * 301.58150 * 21 20 19 23 23 C 1.54507 * 110.51258 * 64.18779 * 21 20 19 24 24 C 1.54479 * 104.06547 * 118.78465 * 23 21 20 25 25 O 1.44430 * 104.80063 * 23.97554 * 24 23 21 26 26 C 1.44422 * 105.27827 * 319.49147 * 25 24 23 27 27 C 1.46842 * 111.19823 * 61.74292 * 20 19 18 28 28 C 1.53039 * 109.52664 * 298.26066 * 27 20 19 29 29 H 0.96997 * 119.99611 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00462 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.46904 * 60.00293 * 12 10 9 32 32 H 1.08998 * 109.47010 * 300.00292 * 12 10 9 33 33 H 0.97004 * 120.00239 * 0.02562 * 13 12 10 34 34 H 0.97003 * 119.99980 * 0.02562 * 16 14 13 35 35 H 1.09007 * 109.57222 * 34.84195 * 17 16 14 36 36 H 1.08997 * 109.50466 * 57.61795 * 18 17 16 37 37 H 1.09007 * 109.53463 * 297.51934 * 18 17 16 38 38 H 1.08999 * 109.46279 * 180.81063 * 19 18 17 39 39 H 1.08992 * 109.46604 * 60.83671 * 19 18 17 40 40 H 1.08997 * 110.50877 * 237.43164 * 23 21 20 41 41 H 1.09001 * 110.51237 * 359.97438 * 23 21 20 42 42 H 1.08993 * 110.37479 * 142.80866 * 24 23 21 43 43 H 1.09004 * 110.36877 * 265.03977 * 24 23 21 44 44 H 1.09003 * 110.37257 * 281.68021 * 26 25 24 45 45 H 1.08997 * 110.37524 * 159.34408 * 26 25 24 46 46 H 1.09002 * 109.46192 * 58.27484 * 27 20 19 47 47 H 1.09004 * 109.46436 * 178.23956 * 27 20 19 48 48 H 1.09006 * 109.49986 * 299.23712 * 28 27 20 49 49 H 1.09002 * 109.53724 * 179.14243 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0010 13 7 2.1956 -5.9765 -0.0017 14 6 1.7464 -7.2472 -0.0009 15 8 0.5510 -7.4693 0.0001 16 7 2.6222 -8.2716 -0.0010 17 6 2.1339 -9.6528 -0.0006 18 6 3.1962 -10.5713 -0.6108 19 6 2.7057 -12.0198 -0.5521 20 7 2.4517 -12.3957 0.8445 21 6 2.1123 -13.8208 0.9528 22 1 1.2336 -14.0500 0.3498 23 6 3.3093 -14.6968 0.5203 24 6 3.6524 -15.5146 1.7851 25 8 2.4281 -15.5409 2.5509 26 6 1.8737 -14.2130 2.4278 27 6 1.4013 -11.5580 1.4371 28 6 1.8526 -10.0957 1.4378 29 1 -0.4849 0.8401 -0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6161 -4.9205 -0.8903 32 1 0.6181 -4.9209 0.8897 33 1 3.1494 -5.7993 -0.0021 34 1 3.5759 -8.0943 -0.0014 35 1 1.2172 -9.7162 -0.5871 36 1 4.1247 -10.4784 -0.0474 37 1 3.3704 -10.2879 -1.6488 38 1 3.4660 -12.6780 -0.9727 39 1 1.7847 -12.1150 -1.1271 40 1 3.0224 -15.3590 -0.2966 41 1 4.1528 -14.0724 0.2257 42 1 3.9515 -16.5268 1.5130 43 1 4.4450 -15.0244 2.3504 44 1 2.3922 -13.5222 3.0927 45 1 0.8066 -14.2252 2.6494 46 1 0.4863 -11.6554 0.8528 47 1 1.2139 -11.8808 2.4613 48 1 2.7600 -9.9953 2.0334 49 1 1.0668 -9.4718 1.8637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680957211.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:05 Heat of formation + Delta-G solvation = -108.202923 kcal Electronic energy + Delta-G solvation = -29224.738645 eV Core-core repulsion = 24993.544013 eV Total energy + Delta-G solvation = -4231.194633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57989 -39.85122 -38.56359 -37.98484 -35.27509 -34.38102 -33.64939 -32.42428 -31.50632 -31.36240 -30.31876 -28.63571 -27.30426 -24.68323 -24.19122 -23.66195 -22.40777 -20.97755 -20.58700 -20.24966 -19.58425 -18.35955 -17.95069 -17.41625 -16.85155 -16.32917 -15.81494 -15.59187 -15.44912 -15.19830 -14.95650 -14.76282 -14.49049 -14.32643 -14.28406 -13.99505 -13.62495 -13.60106 -13.31310 -13.25629 -12.77036 -12.57063 -12.18076 -12.04477 -11.88973 -11.72331 -11.63573 -11.53288 -11.42545 -11.28054 -11.15000 -10.98918 -10.74193 -10.41250 -10.32936 -10.21295 -10.01265 -9.64848 -9.14674 -8.79601 -8.62587 -8.60771 -8.10056 -6.51666 -3.93597 2.79417 3.10027 3.22303 3.23875 3.29090 3.39340 3.65678 3.75159 4.03431 4.08443 4.34324 4.34701 4.45409 4.54839 4.58684 4.77069 4.80536 4.85207 4.90071 4.90592 5.02057 5.17170 5.19361 5.23934 5.25640 5.29494 5.31639 5.37062 5.42773 5.46442 5.50689 5.63012 5.71900 5.85596 5.93350 6.00594 6.07391 6.08532 6.26063 6.54110 6.62634 6.67175 6.75782 7.11170 7.46054 7.92571 8.24462 8.45164 8.80104 9.04690 9.39588 9.87433 10.65304 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.041111 B = 0.001549 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.925369 B =18066.286244 C =18229.532247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.705 3.295 15 O -0.599 6.599 16 N -0.745 5.745 17 C 0.165 3.835 18 C -0.124 4.124 19 C 0.059 3.941 20 N -0.529 5.529 21 C 0.050 3.950 22 H 0.056 0.944 23 C -0.150 4.150 24 C 0.048 3.952 25 O -0.377 6.377 26 C 0.051 3.949 27 C 0.055 3.945 28 C -0.127 4.127 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.407 0.593 34 H 0.396 0.604 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.039 0.961 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.815 -28.514 0.712 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.382 5.382 14 C 0.405 3.595 15 O -0.478 6.478 16 N -0.400 5.400 17 C 0.060 3.940 18 C -0.162 4.162 19 C -0.069 4.069 20 N -0.255 5.255 21 C -0.059 4.059 22 H 0.074 0.926 23 C -0.188 4.188 24 C -0.029 4.029 25 O -0.295 6.295 26 C -0.026 4.026 27 C -0.073 4.073 28 C -0.167 4.167 29 H 0.083 0.917 30 H 0.230 0.770 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.244 0.756 34 H 0.230 0.770 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.057 0.943 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.701 -28.601 1.090 29.006 hybrid contribution -0.054 1.174 -0.606 1.322 sum 4.646 -27.427 0.484 27.822 Atomic orbital electron populations 1.69625 1.06009 1.28403 1.49419 1.25329 0.95665 0.99926 0.96821 0.85754 0.79665 0.80828 0.77814 1.19154 1.20627 1.20626 1.19781 0.93487 0.82007 1.48153 0.87632 1.41791 1.09491 1.04460 1.62682 1.19776 0.88298 0.85027 0.85471 1.90492 1.13757 1.86876 1.57345 1.20772 0.91224 0.84878 1.03081 1.44786 1.11219 1.03363 1.78815 1.15873 0.85259 0.80580 0.77828 1.90897 1.14070 1.84263 1.58539 1.45107 1.08998 1.04843 1.81027 1.20772 0.97635 0.79326 0.96302 1.21872 0.99169 0.93521 1.01645 1.22049 1.00392 0.96161 0.88338 1.62093 1.43581 1.01902 1.17969 1.23010 0.97220 0.88368 0.97324 0.92580 1.23027 0.98767 0.98285 0.98681 1.23378 0.87794 1.00780 0.90927 1.89139 1.37643 1.30177 1.72521 1.23507 0.99555 0.84631 0.94903 1.22114 0.92214 0.93059 0.99912 1.22019 1.02703 0.94498 0.97445 0.91651 0.77024 0.90076 0.90065 0.75617 0.76982 0.89721 0.90350 0.90591 0.90045 0.94377 0.90682 0.89246 0.89203 0.91903 0.90891 0.89150 0.94315 0.90262 0.90847 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.84 13.05 55.50 0.72 -23.11 16 2 C 0.03 0.66 5.50 -17.46 -0.10 0.57 16 3 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 10 C 0.43 9.80 7.85 -10.98 -0.09 9.72 16 11 O -0.60 -15.21 15.24 5.54 0.08 -15.13 16 12 C 0.13 2.39 6.15 -5.19 -0.03 2.36 16 13 N -0.72 -12.03 5.53 -66.42 -0.37 -12.40 16 14 C 0.70 11.16 8.54 -86.93 -0.74 10.42 16 15 O -0.60 -11.44 16.01 5.29 0.08 -11.35 16 16 N -0.74 -8.54 5.08 -58.56 -0.30 -8.84 16 17 C 0.17 1.65 2.52 -67.81 -0.17 1.47 16 18 C -0.12 -0.89 5.57 -26.65 -0.15 -1.03 16 19 C 0.06 0.39 5.25 -3.83 -0.02 0.37 16 20 N -0.53 -3.76 4.44 -224.82 -1.00 -4.76 16 21 C 0.05 0.33 2.83 -66.14 -0.19 0.14 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 23 C -0.15 -0.83 6.17 -25.16 -0.16 -0.98 16 24 C 0.05 0.30 7.63 37.93 0.29 0.59 16 25 O -0.38 -3.33 11.65 -35.23 -0.41 -3.74 16 26 C 0.05 0.37 5.94 37.94 0.23 0.59 16 27 C 0.06 0.44 5.23 -3.84 -0.02 0.42 16 28 C -0.13 -1.22 5.67 -26.65 -0.15 -1.37 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.41 6.55 7.45 -40.82 -0.30 6.25 16 34 H 0.40 3.67 8.62 -40.82 -0.35 3.32 16 35 H 0.08 1.02 7.58 -51.92 -0.39 0.63 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.44 6.49 -51.93 -0.34 0.10 16 39 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.47 6.81 -51.93 -0.35 0.12 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.54 7.58 -51.93 -0.39 0.14 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.08 0.57 6.57 -51.93 -0.34 0.23 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -32.16 392.03 -9.60 -41.76 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -7.80 Total: 15.04 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: -1.44 Total: 14.84 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -1.00 Total: -62.77 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.24 Total: -30.22 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.16 -9.60 -41.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680957211.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.448 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds