Wall clock time and date at job start Sat Apr 11 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47278 * 2 1 4 4 C 1.52998 * 109.46582 * 240.00166 * 2 1 3 5 5 C 1.47204 * 109.47106 * 120.00479 * 2 1 3 6 6 C 2.64604 * 109.47106 * 120.00486 * 2 1 3 7 7 C 4.07800 * 109.47066 * 120.00327 * 2 1 3 8 8 O 1.21623 * 119.99654 * 255.04181 * 7 6 5 9 9 N 1.34769 * 120.00253 * 74.77668 * 7 6 5 10 10 C 1.46503 * 119.99990 * 180.27388 * 9 7 6 11 11 C 1.53004 * 109.46942 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.76879 * 65.00127 * 11 10 9 13 13 C 1.52787 * 109.77204 * 185.74038 * 11 10 9 14 14 C 1.50599 * 110.86259 * 167.05327 * 13 11 10 15 15 C 1.38976 * 117.62115 * 159.95773 * 14 13 11 16 16 C 1.37912 * 120.58345 * 179.50298 * 15 14 13 17 17 C 1.38262 * 119.82482 * 359.94822 * 16 15 14 18 18 C 1.37955 * 119.71756 * 0.24082 * 17 16 15 19 19 C 1.37669 * 122.86375 * 339.86524 * 14 13 11 20 20 C 1.50812 * 122.34333 * 1.45326 * 19 14 13 21 21 N 1.46682 * 109.70884 * 348.47008 * 20 19 14 22 22 C 1.36945 * 121.33013 * 224.41271 * 21 20 19 23 23 H 1.07995 * 119.99238 * 151.87715 * 22 21 20 24 24 C 1.38804 * 119.99932 * 331.87357 * 22 21 20 25 25 N 1.31618 * 120.00379 * 349.09989 * 24 22 21 26 26 Si 1.86803 * 119.99840 * 169.09444 * 24 22 21 27 27 H 1.48502 * 109.46893 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47175 * 119.99666 * 26 24 22 29 29 H 1.48492 * 109.47424 * 240.00240 * 26 24 22 30 30 H 1.09003 * 109.46632 * 299.99806 * 1 2 3 31 31 H 1.08996 * 109.47188 * 59.99400 * 1 2 3 32 32 H 1.09003 * 109.47182 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47033 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47502 * 300.00408 * 3 2 1 35 35 H 1.09005 * 109.46961 * 59.99986 * 3 2 1 36 36 H 1.08996 * 109.47373 * 299.99918 * 4 2 1 37 37 H 1.08997 * 109.47482 * 60.00116 * 4 2 1 38 38 H 1.09001 * 109.46880 * 180.02562 * 4 2 1 39 39 H 0.96999 * 120.00457 * 0.26547 * 9 7 6 40 40 H 1.09000 * 109.47044 * 299.99501 * 10 9 7 41 41 H 1.08997 * 109.47450 * 59.99547 * 10 9 7 42 42 H 1.09002 * 109.19954 * 287.41015 * 13 11 10 43 43 H 1.09001 * 109.19868 * 46.70016 * 13 11 10 44 44 H 1.08009 * 119.71242 * 359.51238 * 15 14 13 45 45 H 1.08001 * 120.08601 * 179.97438 * 16 15 14 46 46 H 1.07996 * 120.14006 * 180.26293 * 17 16 15 47 47 H 1.08007 * 119.74860 * 180.02562 * 18 17 16 48 48 H 1.08997 * 109.44134 * 108.49297 * 20 19 14 49 49 H 1.09007 * 109.43749 * 228.41448 * 20 19 14 50 50 H 0.97004 * 120.00060 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0207 -0.6940 1.2019 6 6 2.4121 -1.2475 2.1604 7 6 2.8893 -1.9226 3.3296 8 8 2.8343 -1.3738 4.4136 9 7 3.3946 -3.1680 3.2296 10 6 3.8773 -3.8609 4.4268 11 6 4.3948 -5.2477 4.0395 12 1 5.2682 -5.1486 3.3949 13 6 4.7673 -6.0303 5.2977 14 6 4.9773 -7.4874 4.9805 15 6 5.7161 -8.2433 5.8829 16 6 5.9370 -9.5860 5.6580 17 6 5.4191 -10.1879 4.5261 18 6 4.6887 -9.4392 3.6267 19 6 4.4704 -8.0863 3.8493 20 6 3.6861 -7.3206 2.8135 21 7 3.3389 -5.9948 3.3362 22 6 2.0825 -5.4735 3.1780 23 1 1.6954 -4.7692 3.8994 24 6 1.3066 -5.8505 2.0905 25 7 1.8453 -6.5338 1.1030 26 14 -0.5022 -5.3882 2.0286 27 1 -0.8604 -4.6260 3.2518 28 1 -0.7580 -4.5489 0.8305 29 1 -1.3261 -6.6213 1.9543 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2493 37 1 1.6766 -0.2074 -2.1392 38 1 3.1299 -0.7217 -1.2491 39 1 3.4385 -3.6057 2.3651 40 1 4.6845 -3.2849 4.8793 41 1 3.0604 -3.9646 5.1409 42 1 5.6855 -5.6188 5.7171 43 1 3.9654 -5.9348 6.0298 44 1 6.1207 -7.7753 6.7682 45 1 6.5126 -10.1657 6.3644 46 1 5.5854 -11.2399 4.3471 47 1 4.2836 -9.9090 2.7426 48 1 4.2887 -7.2077 1.9123 49 1 2.7732 -7.8658 2.5735 50 1 1.3032 -6.7969 0.3428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700228535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:43 Heat of formation + Delta-G solvation = 49.219397 kcal Electronic energy + Delta-G solvation = -29535.463656 eV Core-core repulsion = 25721.944631 eV Total energy + Delta-G solvation = -3813.519026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -39.53230 -38.89445 -37.47013 -36.56730 -33.76668 -32.94954 -31.96774 -31.42077 -30.21352 -28.95627 -27.39813 -27.34769 -25.94215 -25.60090 -23.20167 -22.78602 -21.56523 -21.09630 -20.39906 -19.14680 -18.03637 -16.32404 -16.26585 -15.82399 -15.58480 -15.28885 -14.60305 -14.57315 -14.39533 -14.30469 -14.25766 -13.91033 -13.72491 -13.20342 -12.93386 -12.63820 -12.54123 -12.50437 -12.48080 -12.20620 -11.78489 -11.77264 -11.73947 -11.60220 -11.32152 -11.27672 -11.14680 -10.94068 -10.87153 -10.74566 -10.52853 -10.22011 -10.15757 -10.02885 -10.00473 -9.76070 -9.64747 -8.81161 -8.37382 -8.24666 -7.87040 -6.84664 -5.95005 -3.39162 1.85171 1.92827 2.01175 2.66567 3.27831 3.37028 3.41189 3.60090 4.00740 4.26997 4.34626 4.49474 4.86043 4.89199 5.00055 5.11734 5.20249 5.26566 5.35053 5.45227 5.48564 5.53158 5.54772 5.58594 5.66420 5.69148 5.75034 5.79241 5.86262 5.92147 5.95874 5.99460 6.02615 6.10214 6.17149 6.20190 6.22854 6.27172 6.32947 6.53344 6.60536 6.77611 6.92800 6.94201 7.01667 7.11807 7.17067 7.48070 7.57813 7.61849 7.70452 8.14548 8.23539 8.72880 9.04540 9.64008 10.22080 11.13976 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.003226 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.814701 B = 8678.684213 C = 9703.097817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.041 3.959 3 C -0.139 4.139 4 C -0.142 4.142 5 C -0.092 4.092 6 C -0.201 4.201 7 C 0.624 3.376 8 O -0.551 6.551 9 N -0.677 5.677 10 C 0.136 3.864 11 C 0.157 3.843 12 H 0.043 0.957 13 C -0.090 4.090 14 C -0.068 4.068 15 C -0.127 4.127 16 C -0.140 4.140 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.077 4.077 20 C 0.208 3.792 21 N -0.589 5.589 22 C -0.247 4.247 23 H 0.072 0.928 24 C 0.010 3.990 25 N -0.903 5.903 26 Si 0.894 3.106 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.288 1.288 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.419 0.581 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.117 0.883 48 H 0.043 0.957 49 H 0.097 0.903 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.656 4.605 -1.373 6.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.040 3.960 3 C -0.197 4.197 4 C -0.199 4.199 5 C -0.094 4.094 6 C -0.204 4.204 7 C 0.410 3.590 8 O -0.432 6.432 9 N -0.327 5.327 10 C 0.012 3.988 11 C 0.050 3.950 12 H 0.061 0.939 13 C -0.130 4.130 14 C -0.068 4.068 15 C -0.145 4.145 16 C -0.158 4.158 17 C -0.148 4.148 18 C -0.142 4.142 19 C -0.079 4.079 20 C 0.082 3.918 21 N -0.312 5.312 22 C -0.376 4.376 23 H 0.090 0.910 24 C -0.189 4.189 25 N -0.548 5.548 26 Si 0.724 3.276 27 H -0.202 1.202 28 H -0.215 1.215 29 H -0.215 1.215 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.258 0.742 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.135 0.865 48 H 0.060 0.940 49 H 0.115 0.885 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.529 4.913 -0.759 6.725 hybrid contribution -0.998 -0.359 -0.390 1.130 sum 3.531 4.553 -1.149 5.876 Atomic orbital electron populations 1.21907 0.92558 1.03091 1.02419 1.17845 0.95820 0.94119 0.88174 1.21888 1.01615 0.93699 1.02464 1.21903 1.01680 1.01074 0.95247 1.22346 0.95096 0.97589 0.94384 1.20896 1.03298 1.00626 0.95541 1.14704 0.78153 0.81374 0.84757 1.90786 1.57622 1.67389 1.27354 1.45786 1.60182 1.13696 1.13029 1.21333 0.98548 0.91551 0.87373 1.20722 0.92277 0.89383 0.92586 0.93904 1.20877 1.00819 0.91851 0.99421 1.19474 0.97280 0.95630 0.94427 1.21126 1.00036 0.94270 0.99104 1.20850 1.01867 0.95033 0.98087 1.20951 0.99362 0.99188 0.95338 1.21115 0.99518 0.93999 0.99569 1.21013 0.96436 0.94187 0.96253 1.19783 0.97399 0.84717 0.89853 1.44043 1.07686 1.13668 1.65843 1.19158 0.89860 1.24040 1.04537 0.91002 1.25014 0.98547 1.00226 0.95122 1.69964 1.34640 1.41903 1.08251 0.86324 0.85562 0.77940 0.77788 1.20157 1.21465 1.21461 0.92028 0.91385 0.91742 0.92062 0.91460 0.92040 0.91517 0.91507 0.91985 0.74228 0.91973 0.91107 0.91767 0.90720 0.87063 0.87123 0.87000 0.86478 0.93980 0.88538 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.43 37.16 0.31 -1.32 16 2 C 0.04 0.50 0.95 -157.30 -0.15 0.35 16 3 C -0.14 -1.39 8.43 37.16 0.31 -1.07 16 4 C -0.14 -1.59 8.43 37.16 0.31 -1.28 16 5 C -0.09 -1.51 11.77 -37.12 -0.44 -1.94 16 6 C -0.20 -3.81 13.61 -38.84 -0.53 -4.34 16 7 C 0.62 12.79 7.65 -14.34 -0.11 12.68 16 8 O -0.55 -12.51 17.09 5.26 0.09 -12.42 16 9 N -0.68 -13.25 4.04 -62.76 -0.25 -13.50 16 10 C 0.14 2.49 4.44 -4.04 -0.02 2.47 16 11 C 0.16 2.93 3.01 -67.64 -0.20 2.73 16 12 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.09 -1.51 5.21 -28.04 -0.15 -1.65 16 14 C -0.07 -1.21 5.76 -104.61 -0.60 -1.81 16 15 C -0.13 -1.97 9.59 -39.43 -0.38 -2.35 16 16 C -0.14 -2.04 10.04 -39.69 -0.40 -2.44 16 17 C -0.13 -1.96 10.05 -39.68 -0.40 -2.36 16 18 C -0.12 -2.13 9.62 -39.47 -0.38 -2.51 16 19 C -0.08 -1.49 5.82 -104.56 -0.61 -2.10 16 20 C 0.21 4.57 4.80 -5.04 -0.02 4.55 16 21 N -0.59 -13.04 2.86 -166.39 -0.48 -13.51 16 22 C -0.25 -6.02 7.02 -15.06 -0.11 -6.13 16 23 H 0.07 1.83 6.18 -52.49 -0.32 1.50 16 24 C 0.01 0.25 5.08 -17.43 -0.09 0.16 16 25 N -0.90 -23.60 11.07 55.49 0.61 -22.98 16 26 Si 0.89 20.99 29.57 -169.99 -5.03 15.97 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.42 8.60 7.37 -40.82 -0.30 8.29 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.40 7.28 -51.93 -0.38 1.02 16 42 H 0.06 0.91 8.10 -51.93 -0.42 0.48 16 43 H 0.07 1.28 8.02 -51.93 -0.42 0.86 16 44 H 0.11 1.46 8.05 -52.48 -0.42 1.04 16 45 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 46 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 47 H 0.12 1.90 8.05 -52.48 -0.42 1.47 16 48 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.10 2.39 6.46 -51.93 -0.34 2.06 16 50 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 407.31 15.07 6.14 6.14 Total: -1.00 -28.53 407.31 -10.63 -39.16 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -8.08 Total: 9.52 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -3.64 Total: -8.36 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.11 Total: -50.00 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -28.53 -10.63 -39.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700228535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.378 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds