Wall clock time and date at job start Sat Apr 11 2020 06:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47278 * 2 1 4 4 C 1.52998 * 109.46582 * 240.00166 * 2 1 3 5 5 C 1.47204 * 109.47106 * 120.00479 * 2 1 3 6 6 C 2.64604 * 109.47106 * 120.00486 * 2 1 3 7 7 C 4.07800 * 109.47066 * 120.00327 * 2 1 3 8 8 O 1.21623 * 119.99654 * 255.04181 * 7 6 5 9 9 N 1.34769 * 120.00253 * 74.77668 * 7 6 5 10 10 C 1.46503 * 119.99990 * 180.27388 * 9 7 6 11 11 C 1.53004 * 109.46942 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.76879 * 65.00127 * 11 10 9 13 13 C 1.52787 * 109.77204 * 185.74038 * 11 10 9 14 14 C 1.50599 * 110.86259 * 167.05327 * 13 11 10 15 15 C 1.38976 * 117.62115 * 159.95773 * 14 13 11 16 16 C 1.37912 * 120.58345 * 179.50298 * 15 14 13 17 17 C 1.38262 * 119.82482 * 359.94822 * 16 15 14 18 18 C 1.37955 * 119.71756 * 0.24082 * 17 16 15 19 19 C 1.37669 * 122.86375 * 339.86524 * 14 13 11 20 20 C 1.50812 * 122.34333 * 1.45326 * 19 14 13 21 21 N 1.46682 * 109.70884 * 348.47008 * 20 19 14 22 22 C 1.36945 * 121.33013 * 224.41271 * 21 20 19 23 23 H 1.07995 * 119.99238 * 151.87715 * 22 21 20 24 24 C 1.38804 * 119.99932 * 331.87357 * 22 21 20 25 25 N 1.31618 * 120.00379 * 349.09989 * 24 22 21 26 26 Si 1.86803 * 119.99840 * 169.09444 * 24 22 21 27 27 H 1.48502 * 109.46893 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47175 * 119.99666 * 26 24 22 29 29 H 1.48492 * 109.47424 * 240.00240 * 26 24 22 30 30 H 1.09003 * 109.46632 * 299.99806 * 1 2 3 31 31 H 1.08996 * 109.47188 * 59.99400 * 1 2 3 32 32 H 1.09003 * 109.47182 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47033 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47502 * 300.00408 * 3 2 1 35 35 H 1.09005 * 109.46961 * 59.99986 * 3 2 1 36 36 H 1.08996 * 109.47373 * 299.99918 * 4 2 1 37 37 H 1.08997 * 109.47482 * 60.00116 * 4 2 1 38 38 H 1.09001 * 109.46880 * 180.02562 * 4 2 1 39 39 H 0.96999 * 120.00457 * 0.26547 * 9 7 6 40 40 H 1.09000 * 109.47044 * 299.99501 * 10 9 7 41 41 H 1.08997 * 109.47450 * 59.99547 * 10 9 7 42 42 H 1.09002 * 109.19954 * 287.41015 * 13 11 10 43 43 H 1.09001 * 109.19868 * 46.70016 * 13 11 10 44 44 H 1.08009 * 119.71242 * 359.51238 * 15 14 13 45 45 H 1.08001 * 120.08601 * 179.97438 * 16 15 14 46 46 H 1.07996 * 120.14006 * 180.26293 * 17 16 15 47 47 H 1.08007 * 119.74860 * 180.02562 * 18 17 16 48 48 H 1.08997 * 109.44134 * 108.49297 * 20 19 14 49 49 H 1.09007 * 109.43749 * 228.41448 * 20 19 14 50 50 H 0.97004 * 120.00060 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0207 -0.6940 1.2019 6 6 2.4121 -1.2475 2.1604 7 6 2.8893 -1.9226 3.3296 8 8 2.8343 -1.3738 4.4136 9 7 3.3946 -3.1680 3.2296 10 6 3.8773 -3.8609 4.4268 11 6 4.3948 -5.2477 4.0395 12 1 5.2682 -5.1486 3.3949 13 6 4.7673 -6.0303 5.2977 14 6 4.9773 -7.4874 4.9805 15 6 5.7161 -8.2433 5.8829 16 6 5.9370 -9.5860 5.6580 17 6 5.4191 -10.1879 4.5261 18 6 4.6887 -9.4392 3.6267 19 6 4.4704 -8.0863 3.8493 20 6 3.6861 -7.3206 2.8135 21 7 3.3389 -5.9948 3.3362 22 6 2.0825 -5.4735 3.1780 23 1 1.6954 -4.7692 3.8994 24 6 1.3066 -5.8505 2.0905 25 7 1.8453 -6.5338 1.1030 26 14 -0.5022 -5.3882 2.0286 27 1 -0.8604 -4.6260 3.2518 28 1 -0.7580 -4.5489 0.8305 29 1 -1.3261 -6.6213 1.9543 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2493 37 1 1.6766 -0.2074 -2.1392 38 1 3.1299 -0.7217 -1.2491 39 1 3.4385 -3.6057 2.3651 40 1 4.6845 -3.2849 4.8793 41 1 3.0604 -3.9646 5.1409 42 1 5.6855 -5.6188 5.7171 43 1 3.9654 -5.9348 6.0298 44 1 6.1207 -7.7753 6.7682 45 1 6.5126 -10.1657 6.3644 46 1 5.5854 -11.2399 4.3471 47 1 4.2836 -9.9090 2.7426 48 1 4.2887 -7.2077 1.9123 49 1 2.7732 -7.8658 2.5735 50 1 1.3032 -6.7969 0.3428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700228535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:42 Heat of formation + Delta-G solvation = 35.888432 kcal Electronic energy + Delta-G solvation = -29536.041730 eV Core-core repulsion = 25721.944631 eV Total energy + Delta-G solvation = -3814.097100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.03428 -40.38361 -38.50448 -38.10664 -35.43957 -34.56060 -33.34007 -32.93827 -31.72028 -30.48582 -28.25812 -28.21198 -27.43212 -27.28977 -24.65751 -24.39027 -22.89377 -22.47951 -21.74660 -20.66900 -19.58234 -18.02953 -17.75936 -17.31722 -16.86022 -16.66735 -16.25408 -16.04574 -15.87840 -15.53648 -15.29868 -15.25446 -15.16651 -14.80394 -14.61512 -14.06825 -13.80093 -13.71482 -13.39358 -13.34618 -13.29068 -13.15726 -12.82280 -12.75484 -12.67330 -12.66293 -12.57147 -12.30558 -12.28744 -12.27416 -12.17293 -11.90416 -11.62004 -11.57584 -11.31119 -11.23365 -11.20770 -10.70660 -10.00093 -9.53174 -9.26085 -8.69654 -7.91227 -5.34856 0.52516 0.59412 0.63203 1.26520 1.34840 1.40409 1.47091 2.15753 2.43328 2.51382 2.98703 3.16813 3.28029 3.49667 3.80264 3.92442 3.93770 3.98270 4.10514 4.21889 4.24271 4.31131 4.38759 4.40790 4.49601 4.63836 4.69396 4.71628 4.72000 4.79741 4.80871 4.90777 4.91793 4.91916 4.92477 5.04915 5.14907 5.18798 5.22265 5.27460 5.30937 5.35169 5.37214 5.48297 5.51460 5.66400 5.70981 5.75057 6.01780 6.19785 6.27823 6.32830 6.50903 7.09690 7.12016 7.77049 8.32588 9.15979 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.003226 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.814701 B = 8678.684213 C = 9703.097817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.031 3.969 3 C -0.135 4.135 4 C -0.140 4.140 5 C -0.056 4.056 6 C -0.264 4.264 7 C 0.625 3.375 8 O -0.580 6.580 9 N -0.676 5.676 10 C 0.139 3.861 11 C 0.159 3.841 12 H 0.045 0.955 13 C -0.084 4.084 14 C -0.084 4.084 15 C -0.126 4.126 16 C -0.131 4.131 17 C -0.127 4.127 18 C -0.138 4.138 19 C -0.109 4.109 20 C 0.224 3.776 21 N -0.600 5.600 22 C -0.231 4.231 23 H 0.061 0.939 24 C -0.030 4.030 25 N -0.924 5.924 26 Si 0.935 3.065 27 H -0.283 1.283 28 H -0.287 1.287 29 H -0.291 1.291 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.414 0.586 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.141 0.859 45 H 0.149 0.851 46 H 0.142 0.858 47 H 0.114 0.886 48 H 0.015 0.985 49 H 0.060 0.940 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.977 4.971 -0.786 7.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.031 3.969 3 C -0.192 4.192 4 C -0.197 4.197 5 C -0.059 4.059 6 C -0.267 4.267 7 C 0.412 3.588 8 O -0.464 6.464 9 N -0.324 5.324 10 C 0.015 3.985 11 C 0.053 3.947 12 H 0.063 0.937 13 C -0.123 4.123 14 C -0.084 4.084 15 C -0.144 4.144 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.110 4.110 20 C 0.099 3.901 21 N -0.324 5.324 22 C -0.362 4.362 23 H 0.078 0.922 24 C -0.226 4.226 25 N -0.570 5.570 26 Si 0.765 3.235 27 H -0.209 1.209 28 H -0.214 1.214 29 H -0.218 1.218 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.251 0.749 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.088 0.912 44 H 0.159 0.841 45 H 0.166 0.834 46 H 0.160 0.840 47 H 0.132 0.868 48 H 0.032 0.968 49 H 0.078 0.922 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.868 5.270 -0.157 7.889 hybrid contribution -1.357 -0.493 -0.565 1.550 sum 4.511 4.777 -0.722 6.610 Atomic orbital electron populations 1.21942 0.91571 1.02249 1.04144 1.18308 0.96592 0.95461 0.86565 1.21891 1.01641 0.91686 1.03962 1.21920 1.01754 1.00084 0.95930 1.23461 0.92533 0.95684 0.94224 1.20908 1.05989 1.02956 0.96827 1.14871 0.77598 0.81356 0.84967 1.90742 1.59038 1.68036 1.28548 1.45824 1.59958 1.13558 1.13051 1.21392 0.98661 0.91730 0.86677 1.20860 0.91112 0.89426 0.93308 0.93705 1.20818 1.02217 0.91408 0.97827 1.19651 0.97950 0.96283 0.94514 1.21438 0.98960 0.94736 0.99284 1.21332 1.00633 0.94914 0.97989 1.21302 0.97959 1.00498 0.94724 1.21221 1.00404 0.93537 1.00447 1.20769 0.98280 0.95073 0.96897 1.19333 0.95756 0.84750 0.90291 1.44177 1.07898 1.14316 1.66048 1.19107 0.90840 1.22735 1.03475 0.92152 1.25420 1.00608 1.01181 0.95440 1.70074 1.35033 1.43280 1.08603 0.85690 0.83307 0.77284 0.77222 1.20877 1.21410 1.21767 0.92204 0.87837 0.93853 0.92095 0.88172 0.92370 0.93728 0.88084 0.91957 0.74919 0.89510 0.92704 0.88318 0.91200 0.84090 0.83366 0.83981 0.86785 0.96761 0.92180 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.43 71.98 0.61 -2.40 16 2 C 0.03 0.71 0.95 -53.99 -0.05 0.66 16 3 C -0.13 -2.33 8.43 71.98 0.61 -1.72 16 4 C -0.14 -2.91 8.43 71.98 0.61 -2.30 16 5 C -0.06 -1.87 11.77 31.13 0.37 -1.51 16 6 C -0.26 -10.41 13.61 30.01 0.41 -10.00 16 7 C 0.62 26.70 7.65 85.49 0.65 27.35 16 8 O -0.58 -27.27 17.09 -4.10 -0.07 -27.34 16 9 N -0.68 -27.56 4.04 -470.74 -1.90 -29.46 16 10 C 0.14 5.17 4.44 86.38 0.38 5.55 16 11 C 0.16 5.99 3.01 44.78 0.13 6.12 16 12 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 13 C -0.08 -2.68 5.21 29.75 0.16 -2.53 16 14 C -0.08 -2.86 5.76 -19.85 -0.11 -2.98 16 15 C -0.13 -3.47 9.59 22.37 0.21 -3.25 16 16 C -0.13 -3.26 10.04 22.20 0.22 -3.04 16 17 C -0.13 -3.47 10.05 22.21 0.22 -3.25 16 18 C -0.14 -4.72 9.62 22.34 0.21 -4.50 16 19 C -0.11 -4.26 5.82 -19.82 -0.12 -4.37 16 20 C 0.22 10.44 4.80 85.63 0.41 10.85 16 21 N -0.60 -27.70 2.86 -680.33 -1.95 -29.64 16 22 C -0.23 -11.80 7.02 84.03 0.59 -11.21 16 23 H 0.06 3.21 6.18 -2.91 -0.02 3.19 16 24 C -0.03 -1.59 5.08 84.86 0.43 -1.16 16 25 N -0.92 -50.77 11.07 21.65 0.24 -50.53 16 26 Si 0.93 44.76 29.57 68.60 2.03 46.78 16 27 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 28 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 29 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 39 H 0.41 17.87 7.37 -92.71 -0.68 17.18 16 40 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.05 2.22 7.28 -2.39 -0.02 2.21 16 42 H 0.10 2.48 8.10 -2.39 -0.02 2.46 16 43 H 0.07 2.32 8.02 -2.39 -0.02 2.30 16 44 H 0.14 3.02 8.05 -2.91 -0.02 2.99 16 45 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 46 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 47 H 0.11 3.83 8.05 -2.91 -0.02 3.81 16 48 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.06 3.19 6.46 -2.38 -0.02 3.17 16 50 H 0.25 13.52 8.31 -92.70 -0.77 12.74 16 Total: -1.00 -66.07 407.31 4.55 -61.51 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.25 Total: 32.36 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.95 Total: -3.69 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -3.61 Total: -109.63 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.07 Total: -27.34 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -66.07 4.55 -61.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700228535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.403 kcal (2) G-P(sol) polarization free energy of solvation -66.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds