Wall clock time and date at job start Sat Apr 11 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47198 * 2 1 4 4 C 1.53001 * 109.47006 * 119.99829 * 2 1 3 5 5 H 1.09002 * 109.46993 * 299.99861 * 4 2 1 6 6 C 1.52997 * 109.47477 * 59.99603 * 4 2 1 7 7 C 1.53002 * 109.47535 * 184.99759 * 6 4 2 8 8 N 1.46494 * 109.47001 * 180.02562 * 7 6 4 9 9 C 1.34784 * 119.99635 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99925 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99961 * 180.02562 * 9 8 7 12 12 C 1.52992 * 109.47257 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47274 * 179.97438 * 12 11 9 14 14 H 1.09000 * 110.53396 * 307.83178 * 13 12 11 15 15 N 1.47316 * 110.59409 * 70.82648 * 13 12 11 16 16 C 1.34526 * 106.61514 * 118.52955 * 15 13 12 17 17 O 1.21541 * 123.77004 * 180.02562 * 16 15 13 18 18 N 1.33791 * 112.46269 * 359.97438 * 16 15 13 19 19 C 1.34770 * 111.64001 * 0.02562 * 18 16 15 20 20 O 1.21235 * 127.15527 * 180.02562 * 19 18 16 21 21 N 1.46499 * 109.47252 * 180.02562 * 4 2 1 22 22 C 1.36935 * 120.00238 * 84.99532 * 21 4 2 23 23 H 1.08002 * 120.00281 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00036 * 179.97438 * 22 21 4 25 25 N 1.31621 * 120.00377 * 0.02562 * 24 22 21 26 26 Si 1.86810 * 119.99896 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47009 * 90.00629 * 26 24 22 28 28 H 1.48497 * 109.47109 * 210.00171 * 26 24 22 29 29 H 1.48493 * 109.47277 * 330.00428 * 26 24 22 30 30 H 1.09002 * 109.47131 * 300.00394 * 1 2 3 31 31 H 1.09001 * 109.46915 * 60.00187 * 1 2 3 32 32 H 1.08996 * 109.47443 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47279 * 239.99097 * 2 1 3 34 34 H 1.09007 * 109.47010 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47035 * 299.99739 * 3 2 1 36 36 H 1.08995 * 109.47547 * 60.00096 * 3 2 1 37 37 H 1.09005 * 109.46889 * 65.00084 * 6 4 2 38 38 H 1.08996 * 109.47223 * 305.00863 * 6 4 2 39 39 H 1.09005 * 109.46767 * 60.00250 * 7 6 4 40 40 H 1.09002 * 109.47113 * 300.00590 * 7 6 4 41 41 H 0.96995 * 120.00292 * 0.27801 * 8 7 6 42 42 H 1.09004 * 109.46932 * 300.00223 * 11 9 8 43 43 H 1.08997 * 109.47392 * 59.99562 * 11 9 8 44 44 H 1.09004 * 109.47330 * 299.99977 * 12 11 9 45 45 H 1.09005 * 109.47124 * 59.99773 * 12 11 9 46 46 H 0.96993 * 126.69244 * 298.50537 * 15 13 12 47 47 H 0.96994 * 124.17915 * 180.02562 * 18 16 15 48 48 H 0.97000 * 120.00157 * 264.99650 * 21 4 2 49 49 H 0.96996 * 120.00378 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 1.5299 -2.1637 1.2494 7 6 1.9347 -2.8477 2.5568 8 7 1.4468 -4.2290 2.5566 9 6 1.6869 -5.0287 3.6147 10 8 2.3073 -4.6047 4.5667 11 6 1.1856 -6.4498 3.6143 12 6 1.5891 -7.1334 4.9222 13 6 1.0795 -8.5761 4.9220 14 1 0.0140 -8.6052 4.6942 15 7 1.8406 -9.3943 3.9621 16 6 2.4440 -10.3623 4.6753 17 8 3.1569 -11.2169 4.1867 18 7 2.1727 -10.2786 5.9828 19 6 1.3584 -9.2400 6.2558 20 8 0.9371 -8.9058 7.3424 21 7 3.5049 -0.7207 1.2496 22 6 4.1891 0.3543 1.7510 23 1 3.6488 1.2016 2.1466 24 6 5.5773 0.3545 1.7518 25 7 6.2359 -0.6784 1.2702 26 14 6.5107 1.8207 2.4365 27 1 6.7575 1.6171 3.8866 28 1 7.8086 1.9560 1.7278 29 1 5.7080 3.0544 2.2394 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5140 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.9645 -2.7028 0.4076 38 1 0.4436 -2.1650 1.1598 39 1 1.5000 -2.3086 3.3986 40 1 3.0210 -2.8464 2.6464 41 1 0.9541 -4.5693 1.7935 42 1 0.0993 -6.4518 3.5238 43 1 1.6211 -6.9886 2.7728 44 1 2.6754 -7.1313 5.0131 45 1 1.1531 -6.5945 5.7634 46 1 1.8955 -9.2614 3.0029 47 1 2.5193 -10.8898 6.6514 48 1 3.9903 -1.4819 0.8947 49 1 7.2058 -0.6781 1.2705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700715029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:55 Heat of formation + Delta-G solvation = -93.271085 kcal Electronic energy + Delta-G solvation = -29249.350920 eV Core-core repulsion = 25018.803780 eV Total energy + Delta-G solvation = -4230.547140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -42.78235 -39.70675 -39.03406 -37.54142 -36.83840 -35.08399 -34.68122 -33.07042 -32.67522 -31.19288 -29.63049 -28.22374 -26.37287 -25.35512 -23.90140 -23.15529 -22.72960 -21.78018 -21.13397 -20.35669 -19.20767 -18.81938 -17.42946 -17.34864 -17.07104 -16.94637 -16.21321 -16.09951 -15.82808 -15.59005 -15.15476 -14.76388 -14.58493 -14.21990 -13.99096 -13.94700 -13.53450 -13.45436 -13.19700 -12.88642 -12.64742 -12.36965 -12.03366 -11.74007 -11.65002 -11.54991 -11.40374 -11.23193 -10.92733 -10.82444 -10.77659 -10.71471 -10.62612 -10.46745 -10.29575 -10.05899 -10.02290 -9.99892 -9.69734 -9.46576 -8.90770 -8.82032 -6.94420 -5.75985 -3.03593 1.13170 1.96526 2.56836 2.64124 2.67686 3.19205 3.44483 3.49639 3.49949 3.51286 4.14252 4.29275 4.50776 4.59941 4.74442 4.89190 4.89954 5.12463 5.20245 5.33384 5.45682 5.47979 5.53237 5.57819 5.67883 5.68732 5.72848 5.88369 5.98164 6.14008 6.19854 6.24564 6.26942 6.37264 6.38637 6.44434 6.52278 6.62979 6.67908 6.69289 6.80803 6.91587 7.10236 7.31767 7.56057 7.68519 7.72389 8.28336 8.42272 9.53863 10.10199 10.44784 11.46510 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.002063 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.437792 B =13569.503302 C =14725.502276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.185 3.815 5 H 0.049 0.951 6 C -0.135 4.135 7 C 0.121 3.879 8 N -0.728 5.728 9 C 0.506 3.494 10 O -0.535 6.535 11 C -0.139 4.139 12 C -0.106 4.106 13 C 0.092 3.908 14 H 0.133 0.867 15 N -0.721 5.721 16 C 0.705 3.295 17 O -0.544 6.544 18 N -0.681 5.681 19 C 0.530 3.470 20 O -0.461 6.461 21 N -0.721 5.721 22 C -0.232 4.232 23 H 0.072 0.928 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.901 3.099 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.396 0.604 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.442 0.558 47 H 0.433 0.567 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.782 -16.480 1.790 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.198 4.198 4 C 0.074 3.926 5 H 0.067 0.933 6 C -0.174 4.174 7 C -0.002 4.002 8 N -0.379 5.379 9 C 0.291 3.709 10 O -0.411 6.411 11 C -0.179 4.179 12 C -0.145 4.145 13 C -0.017 4.017 14 H 0.150 0.850 15 N -0.387 5.387 16 C 0.404 3.596 17 O -0.417 6.417 18 N -0.352 5.352 19 C 0.315 3.685 20 O -0.330 6.330 21 N -0.362 5.362 22 C -0.363 4.363 23 H 0.090 0.910 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.732 3.268 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.229 0.771 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.119 0.881 46 H 0.287 0.713 47 H 0.276 0.724 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.137 -16.198 2.874 23.045 hybrid contribution 0.675 0.238 -0.377 0.809 sum -15.462 -15.960 2.497 22.362 Atomic orbital electron populations 1.21935 0.97156 1.00579 1.00761 1.21776 0.93256 0.97753 1.00473 1.21831 1.04285 0.94838 0.98824 1.20185 0.86045 0.91088 0.95241 0.93339 1.22124 1.00429 0.98286 0.96542 1.21464 1.01250 0.79309 0.98129 1.46128 1.57902 1.13996 1.19897 1.20429 0.80151 0.87422 0.82871 1.90772 1.39977 1.75871 1.34509 1.21630 1.03085 0.93910 0.99290 1.21580 1.03680 0.90155 0.99111 1.22211 0.99660 0.93291 0.86500 0.84953 1.45595 1.52116 1.30379 1.10587 1.15851 0.80207 0.82410 0.81157 1.91081 1.40057 1.38024 1.72549 1.44331 1.48410 1.31967 1.10460 1.20763 0.77145 0.79840 0.90770 1.90879 1.50641 1.65130 1.26322 1.42435 0.98902 1.21095 1.73744 1.19184 0.88787 0.96270 1.32033 0.91041 1.24708 0.96494 0.97728 1.01964 1.69644 1.06791 1.29908 1.51685 0.86282 0.79578 0.82304 0.78616 1.21765 1.21915 1.20784 0.93291 0.93831 0.93242 0.92226 0.89485 0.95232 0.94124 0.91701 0.91562 0.91873 0.89762 0.77081 0.88326 0.88841 0.89431 0.88100 0.71311 0.72441 0.78343 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.85 37.16 0.33 -1.55 16 2 C -0.11 -1.81 2.69 -90.62 -0.24 -2.05 16 3 C -0.14 -2.51 8.26 37.16 0.31 -2.21 16 4 C 0.19 3.29 2.02 -67.93 -0.14 3.15 16 5 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 6 C -0.14 -1.88 4.65 -26.73 -0.12 -2.00 16 7 C 0.12 1.84 5.56 -4.04 -0.02 1.81 16 8 N -0.73 -8.10 5.56 -60.29 -0.33 -8.44 16 9 C 0.51 6.01 7.83 -10.98 -0.09 5.93 16 10 O -0.53 -9.23 15.98 5.56 0.09 -9.14 16 11 C -0.14 -0.83 5.64 -27.89 -0.16 -0.99 16 12 C -0.11 -0.74 4.25 -26.73 -0.11 -0.85 16 13 C 0.09 0.44 3.65 -68.20 -0.25 0.19 16 14 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 15 N -0.72 -3.63 6.06 -59.19 -0.36 -3.99 16 16 C 0.70 5.70 8.99 -88.02 -0.79 4.91 16 17 O -0.54 -6.55 18.04 5.33 0.10 -6.46 16 18 N -0.68 -4.49 5.70 -15.79 -0.09 -4.58 16 19 C 0.53 3.86 8.14 -10.56 -0.09 3.77 16 20 O -0.46 -4.82 18.02 5.60 0.10 -4.72 16 21 N -0.72 -16.51 4.45 -53.43 -0.24 -16.75 16 22 C -0.23 -6.03 7.57 -15.06 -0.11 -6.14 16 23 H 0.07 1.83 7.40 -52.49 -0.39 1.44 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 26 Si 0.90 22.16 29.55 -169.99 -5.02 17.14 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.55 6.32 -51.93 -0.33 0.22 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.87 6.01 -51.93 -0.31 1.55 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.75 6.17 -51.93 -0.32 0.43 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.65 7.75 -51.93 -0.40 1.25 16 41 H 0.40 2.96 8.47 -40.82 -0.35 2.61 16 42 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 0.36 7.69 -51.93 -0.40 -0.04 16 44 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 45 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 46 H 0.44 1.40 8.61 -40.82 -0.35 1.04 16 47 H 0.43 2.17 8.96 -40.82 -0.37 1.81 16 48 H 0.38 9.49 7.80 -40.82 -0.32 9.17 16 49 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 402.41 15.07 6.06 6.06 Total: -1.00 -36.03 402.41 -8.29 -44.32 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -7.73 Total: 9.77 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.59 Total: 3.51 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.30 Total: -60.49 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.29 Total: -20.31 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.03 -8.29 -44.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700715029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.954 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds