Wall clock time and date at job start Sat Apr 11 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47198 * 2 1 4 4 C 1.53001 * 109.47006 * 119.99829 * 2 1 3 5 5 H 1.09002 * 109.46993 * 299.99861 * 4 2 1 6 6 C 1.52997 * 109.47477 * 59.99603 * 4 2 1 7 7 C 1.53002 * 109.47535 * 184.99759 * 6 4 2 8 8 N 1.46494 * 109.47001 * 180.02562 * 7 6 4 9 9 C 1.34784 * 119.99635 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99925 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99961 * 180.02562 * 9 8 7 12 12 C 1.52992 * 109.47257 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47274 * 179.97438 * 12 11 9 14 14 H 1.09000 * 110.53396 * 307.83178 * 13 12 11 15 15 N 1.47316 * 110.59409 * 70.82648 * 13 12 11 16 16 C 1.34526 * 106.61514 * 118.52955 * 15 13 12 17 17 O 1.21541 * 123.77004 * 180.02562 * 16 15 13 18 18 N 1.33791 * 112.46269 * 359.97438 * 16 15 13 19 19 C 1.34770 * 111.64001 * 0.02562 * 18 16 15 20 20 O 1.21235 * 127.15527 * 180.02562 * 19 18 16 21 21 N 1.46499 * 109.47252 * 180.02562 * 4 2 1 22 22 C 1.36935 * 120.00238 * 84.99532 * 21 4 2 23 23 H 1.08002 * 120.00281 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00036 * 179.97438 * 22 21 4 25 25 N 1.31621 * 120.00377 * 0.02562 * 24 22 21 26 26 Si 1.86810 * 119.99896 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47009 * 90.00629 * 26 24 22 28 28 H 1.48497 * 109.47109 * 210.00171 * 26 24 22 29 29 H 1.48493 * 109.47277 * 330.00428 * 26 24 22 30 30 H 1.09002 * 109.47131 * 300.00394 * 1 2 3 31 31 H 1.09001 * 109.46915 * 60.00187 * 1 2 3 32 32 H 1.08996 * 109.47443 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47279 * 239.99097 * 2 1 3 34 34 H 1.09007 * 109.47010 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47035 * 299.99739 * 3 2 1 36 36 H 1.08995 * 109.47547 * 60.00096 * 3 2 1 37 37 H 1.09005 * 109.46889 * 65.00084 * 6 4 2 38 38 H 1.08996 * 109.47223 * 305.00863 * 6 4 2 39 39 H 1.09005 * 109.46767 * 60.00250 * 7 6 4 40 40 H 1.09002 * 109.47113 * 300.00590 * 7 6 4 41 41 H 0.96995 * 120.00292 * 0.27801 * 8 7 6 42 42 H 1.09004 * 109.46932 * 300.00223 * 11 9 8 43 43 H 1.08997 * 109.47392 * 59.99562 * 11 9 8 44 44 H 1.09004 * 109.47330 * 299.99977 * 12 11 9 45 45 H 1.09005 * 109.47124 * 59.99773 * 12 11 9 46 46 H 0.96993 * 126.69244 * 298.50537 * 15 13 12 47 47 H 0.96994 * 124.17915 * 180.02562 * 18 16 15 48 48 H 0.97000 * 120.00157 * 264.99650 * 21 4 2 49 49 H 0.96996 * 120.00378 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 1.5299 -2.1637 1.2494 7 6 1.9347 -2.8477 2.5568 8 7 1.4468 -4.2290 2.5566 9 6 1.6869 -5.0287 3.6147 10 8 2.3073 -4.6047 4.5667 11 6 1.1856 -6.4498 3.6143 12 6 1.5891 -7.1334 4.9222 13 6 1.0795 -8.5761 4.9220 14 1 0.0140 -8.6052 4.6942 15 7 1.8406 -9.3943 3.9621 16 6 2.4440 -10.3623 4.6753 17 8 3.1569 -11.2169 4.1867 18 7 2.1727 -10.2786 5.9828 19 6 1.3584 -9.2400 6.2558 20 8 0.9371 -8.9058 7.3424 21 7 3.5049 -0.7207 1.2496 22 6 4.1891 0.3543 1.7510 23 1 3.6488 1.2016 2.1466 24 6 5.5773 0.3545 1.7518 25 7 6.2359 -0.6784 1.2702 26 14 6.5107 1.8207 2.4365 27 1 6.7575 1.6171 3.8866 28 1 7.8086 1.9560 1.7278 29 1 5.7080 3.0544 2.2394 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5140 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.9645 -2.7028 0.4076 38 1 0.4436 -2.1650 1.1598 39 1 1.5000 -2.3086 3.3986 40 1 3.0210 -2.8464 2.6464 41 1 0.9541 -4.5693 1.7935 42 1 0.0993 -6.4518 3.5238 43 1 1.6211 -6.9886 2.7728 44 1 2.6754 -7.1313 5.0131 45 1 1.1531 -6.5945 5.7634 46 1 1.8955 -9.2614 3.0029 47 1 2.5193 -10.8898 6.6514 48 1 3.9903 -1.4819 0.8947 49 1 7.2058 -0.6781 1.2705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700715029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:54 Heat of formation + Delta-G solvation = -124.483322 kcal Electronic energy + Delta-G solvation = -29250.704384 eV Core-core repulsion = 25018.803780 eV Total energy + Delta-G solvation = -4231.900604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.36717 -40.70742 -39.72973 -38.95003 -37.53937 -36.00198 -35.56642 -34.89256 -33.32417 -32.58302 -31.20838 -28.96138 -27.60181 -26.78806 -25.02888 -24.25651 -23.60606 -22.46428 -22.28755 -21.29984 -20.60325 -19.41740 -19.11089 -18.07667 -17.98883 -17.56357 -17.02723 -16.85230 -16.81621 -16.72491 -16.35427 -15.85526 -15.53216 -15.33053 -15.31696 -15.11850 -14.97593 -14.55725 -14.40525 -13.80778 -13.65600 -13.48696 -13.13246 -12.97957 -12.88466 -12.87995 -12.63342 -12.43659 -12.21084 -12.16813 -12.00438 -11.99466 -11.86653 -11.67630 -11.50013 -11.39256 -11.36499 -11.17427 -10.88170 -10.71348 -10.51164 -9.99915 -8.89071 -7.88482 -5.12322 0.52349 1.43704 1.45350 1.47058 1.53648 1.75337 1.95183 2.14773 2.33851 2.59014 2.94391 3.45121 3.54373 3.86917 3.89841 3.95465 3.99121 4.17183 4.26997 4.34617 4.35133 4.40112 4.47091 4.57045 4.69778 4.72764 4.84145 4.87007 4.96095 5.00187 5.05921 5.07404 5.16793 5.20768 5.27724 5.31373 5.40733 5.47873 5.57160 5.58986 5.73568 5.82118 5.82341 5.88160 6.34761 6.37966 6.69475 7.12333 7.41133 7.41716 8.19531 8.40366 9.35225 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.002063 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.437792 B =13569.503302 C =14725.502276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C -0.139 4.139 4 C 0.177 3.823 5 H 0.037 0.963 6 C -0.118 4.118 7 C 0.132 3.868 8 N -0.713 5.713 9 C 0.496 3.504 10 O -0.599 6.599 11 C -0.125 4.125 12 C -0.104 4.104 13 C 0.109 3.891 14 H 0.180 0.820 15 N -0.702 5.702 16 C 0.703 3.297 17 O -0.586 6.586 18 N -0.676 5.676 19 C 0.529 3.471 20 O -0.496 6.496 21 N -0.730 5.730 22 C -0.209 4.209 23 H 0.074 0.926 24 C -0.080 4.080 25 N -0.970 5.970 26 Si 0.954 3.046 27 H -0.296 1.296 28 H -0.300 1.300 29 H -0.269 1.269 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.046 0.954 40 H 0.031 0.969 41 H 0.419 0.581 42 H 0.146 0.854 43 H 0.125 0.875 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.454 0.546 47 H 0.438 0.562 48 H 0.371 0.629 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.578 -17.132 0.234 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.197 4.197 4 C 0.068 3.932 5 H 0.055 0.945 6 C -0.156 4.156 7 C 0.008 3.992 8 N -0.366 5.366 9 C 0.285 3.715 10 O -0.480 6.480 11 C -0.164 4.164 12 C -0.143 4.143 13 C 0.001 3.999 14 H 0.197 0.803 15 N -0.368 5.368 16 C 0.402 3.598 17 O -0.463 6.463 18 N -0.346 5.346 19 C 0.316 3.684 20 O -0.367 6.367 21 N -0.369 5.369 22 C -0.341 4.341 23 H 0.091 0.909 24 C -0.272 4.272 25 N -0.622 5.622 26 Si 0.785 3.215 27 H -0.224 1.224 28 H -0.227 1.227 29 H -0.194 1.194 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.257 0.743 42 H 0.164 0.836 43 H 0.143 0.857 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.301 0.699 47 H 0.281 0.719 48 H 0.203 0.797 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -20.031 -16.831 1.263 26.194 hybrid contribution 1.763 0.477 0.132 1.831 sum -18.269 -16.354 1.395 24.559 Atomic orbital electron populations 1.21850 0.93559 1.02550 1.01610 1.21639 0.96144 0.96041 0.98836 1.21774 1.01494 0.96557 0.99836 1.20475 0.83074 0.94051 0.95615 0.94512 1.21980 1.02672 0.95228 0.95756 1.21032 0.97978 0.81846 0.98381 1.45914 1.57538 1.12303 1.20836 1.21571 0.78794 0.89518 0.81641 1.90756 1.42824 1.77475 1.36917 1.21688 1.05870 0.89315 0.99512 1.21466 1.01901 0.91419 0.99488 1.22233 1.01738 0.91170 0.84797 0.80343 1.45534 1.51045 1.29091 1.11105 1.15973 0.79894 0.82468 0.81429 1.91057 1.42040 1.39935 1.73281 1.44316 1.47990 1.31965 1.10353 1.21141 0.76432 0.79642 0.91223 1.90869 1.51963 1.66008 1.27854 1.42614 1.01252 1.19748 1.73310 1.19471 0.88907 0.96527 1.29217 0.90861 1.25353 0.97672 1.00066 1.04062 1.69782 1.06191 1.31788 1.54480 0.85403 0.78268 0.80460 0.77355 1.22385 1.22674 1.19377 0.93002 0.92490 0.90724 0.92751 0.93683 0.93162 0.94180 0.90977 0.87419 0.93572 0.95080 0.74319 0.83649 0.85659 0.92334 0.89610 0.69857 0.71918 0.79700 0.94565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.85 71.98 0.64 -2.32 16 2 C -0.11 -3.21 2.69 -10.79 -0.03 -3.24 16 3 C -0.14 -4.83 8.26 71.98 0.59 -4.23 16 4 C 0.18 6.11 2.02 44.99 0.09 6.20 16 5 H 0.04 1.37 8.08 -2.39 -0.02 1.35 16 6 C -0.12 -3.00 4.65 30.59 0.14 -2.86 16 7 C 0.13 3.97 5.56 86.38 0.48 4.45 16 8 N -0.71 -14.30 5.56 -463.05 -2.57 -16.87 16 9 C 0.50 11.06 7.83 87.66 0.69 11.75 16 10 O -0.60 -21.27 15.98 -3.03 -0.05 -21.32 16 11 C -0.12 -1.00 5.64 29.85 0.17 -0.83 16 12 C -0.10 -1.24 4.25 30.59 0.13 -1.11 16 13 C 0.11 0.70 3.65 44.37 0.16 0.86 16 14 H 0.18 -0.30 8.14 -2.39 -0.02 -0.32 16 15 N -0.70 -5.06 6.06 -459.60 -2.79 -7.85 16 16 C 0.70 10.51 8.99 179.44 1.61 12.12 16 17 O -0.59 -13.89 18.04 -3.84 -0.07 -13.96 16 18 N -0.68 -8.43 5.70 -441.12 -2.52 -10.94 16 19 C 0.53 7.04 8.14 87.94 0.72 7.76 16 20 O -0.50 -10.15 18.02 -2.89 -0.05 -10.20 16 21 N -0.73 -34.15 4.45 -322.94 -1.44 -35.59 16 22 C -0.21 -11.13 7.57 84.03 0.64 -10.50 16 23 H 0.07 3.81 7.40 -2.91 -0.02 3.79 16 24 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 25 N -0.97 -59.49 13.06 21.65 0.28 -59.21 16 26 Si 0.95 46.94 29.55 68.60 2.03 48.97 16 27 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 28 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 29 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.24 6.32 -2.39 -0.02 1.22 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.93 6.01 -2.38 -0.01 1.92 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.11 1.90 6.17 -2.39 -0.01 1.89 16 39 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.03 1.27 7.75 -2.39 -0.02 1.25 16 41 H 0.42 4.45 8.47 -92.71 -0.79 3.67 16 42 H 0.15 -0.05 8.14 -2.38 -0.02 -0.07 16 43 H 0.13 0.31 7.69 -2.39 -0.02 0.29 16 44 H 0.06 1.06 8.10 -2.38 -0.02 1.04 16 45 H 0.09 1.35 8.10 -2.38 -0.02 1.34 16 46 H 0.45 1.18 8.61 -92.71 -0.80 0.39 16 47 H 0.44 4.37 8.96 -92.71 -0.83 3.54 16 48 H 0.37 19.02 7.80 -92.71 -0.72 18.30 16 49 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -86.50 402.41 -2.80 -89.31 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -2.12 Total: 23.70 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 6.49 Total: 13.96 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -9.03 Total: -130.45 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.17 Total: -45.48 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -86.50 -2.80 -89.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700715029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.177 kcal (2) G-P(sol) polarization free energy of solvation -86.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds