Wall clock time and date at job start Sat Apr 11 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29946 * 126.28398 * 2 1 4 4 O 1.21294 * 110.25217 * 179.68633 * 3 2 1 5 5 C 1.33639 * 109.81004 * 0.46134 * 4 3 2 6 6 C 1.50708 * 126.55577 * 179.80035 * 5 4 3 7 7 C 1.52998 * 109.47283 * 269.69827 * 6 5 4 8 8 C 1.52998 * 109.47160 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46905 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00350 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99436 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00367 * 0.02562 * 11 9 8 13 13 C 1.46499 * 119.99901 * 180.02562 * 11 9 8 14 14 C 1.52997 * 109.47285 * 89.99948 * 13 11 9 15 15 H 1.09004 * 109.47412 * 305.00668 * 14 13 11 16 16 O 1.42909 * 109.46836 * 65.00238 * 14 13 11 17 17 C 1.52996 * 109.47400 * 185.00215 * 14 13 11 18 18 N 1.46504 * 109.47273 * 180.02562 * 17 14 13 19 19 C 1.46498 * 120.00028 * 89.99909 * 18 17 14 20 20 C 1.36936 * 119.99761 * 270.00166 * 18 17 14 21 21 H 1.08000 * 119.99952 * 142.09460 * 20 18 17 22 22 C 1.38811 * 119.99979 * 322.08924 * 20 18 17 23 23 N 1.31618 * 119.99781 * 157.11638 * 22 20 18 24 24 Si 1.86800 * 120.00238 * 337.11641 * 22 20 18 25 25 H 1.48499 * 109.46955 * 95.72922 * 24 22 20 26 26 H 1.48496 * 109.46965 * 215.73000 * 24 22 20 27 27 H 1.48500 * 109.46818 * 335.73293 * 24 22 20 28 28 N 1.31133 * 106.90003 * 359.54620 * 5 4 3 29 29 H 1.09002 * 109.47578 * 270.02542 * 1 2 3 30 30 H 1.08999 * 109.47734 * 30.02865 * 1 2 3 31 31 H 1.08999 * 109.46966 * 150.03171 * 1 2 3 32 32 H 1.09003 * 109.46528 * 29.69502 * 6 5 4 33 33 H 1.08991 * 109.47051 * 149.69268 * 6 5 4 34 34 H 1.09007 * 109.46723 * 299.99699 * 7 6 5 35 35 H 1.09001 * 109.47405 * 59.99210 * 7 6 5 36 36 H 1.08994 * 109.47025 * 299.99697 * 8 7 6 37 37 H 1.09000 * 109.46830 * 59.99448 * 8 7 6 38 38 H 1.09000 * 109.47691 * 89.99319 * 12 11 9 39 39 H 1.09001 * 109.47165 * 209.99895 * 12 11 9 40 40 H 1.09005 * 109.47128 * 329.99760 * 12 11 9 41 41 H 1.09002 * 109.47518 * 210.00559 * 13 11 9 42 42 H 1.09004 * 109.47217 * 330.00110 * 13 11 9 43 43 H 0.96694 * 113.99908 * 60.00142 * 16 14 13 44 44 H 1.09000 * 109.46947 * 300.00171 * 17 14 13 45 45 H 1.08993 * 109.47278 * 60.00291 * 17 14 13 46 46 H 1.09001 * 109.47339 * 89.55874 * 19 18 17 47 47 H 1.08997 * 109.47252 * 209.56347 * 19 18 17 48 48 H 1.09006 * 109.46980 * 329.56061 * 19 18 17 49 49 H 0.97004 * 120.00168 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4417 0.7125 0.0062 5 6 3.5299 -0.6210 0.0008 6 6 4.7970 -1.4368 0.0013 7 6 5.2263 -1.7132 -1.4410 8 6 6.5130 -2.5409 -1.4404 9 6 6.9355 -2.8136 -2.8611 10 8 6.2729 -2.3875 -3.7832 11 7 8.0502 -3.5302 -3.1068 12 6 8.8508 -4.0444 -1.9930 13 6 8.4612 -3.7948 -4.4878 14 6 9.3843 -2.6736 -4.9690 15 1 8.8863 -1.7125 -4.8403 16 8 10.5921 -2.6902 -4.2053 17 6 9.7134 -2.8834 -6.4483 18 7 10.5978 -1.8100 -6.9089 19 6 12.0512 -1.9678 -6.8157 20 6 10.0657 -0.6593 -7.4265 21 1 10.5274 0.2932 -7.2120 22 6 8.9331 -0.7171 -8.2269 23 7 8.1637 0.3430 -8.3558 24 14 8.5009 -2.2992 -9.1210 25 1 7.5197 -3.0704 -8.3161 26 1 7.9096 -1.9745 -10.4439 27 1 9.7297 -3.1104 -9.3136 28 7 2.3030 -1.0841 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5133 32 1 5.5841 -0.8850 0.5153 33 1 4.6206 -2.3816 0.5153 34 1 4.4391 -2.2649 -1.9549 35 1 5.4026 -0.7683 -1.9550 36 1 7.2999 -1.9888 -0.9266 37 1 6.3370 -3.4857 -0.9262 38 1 8.4937 -5.0364 -1.7163 39 1 9.8963 -4.1058 -2.2949 40 1 8.7581 -3.3737 -1.1387 41 1 8.9911 -4.7464 -4.5332 42 1 7.5795 -3.8391 -5.1272 43 1 11.0886 -3.5172 -4.2726 44 1 10.2114 -3.8444 -6.5770 45 1 8.7923 -2.8707 -7.0308 46 1 12.4259 -2.4298 -7.7291 47 1 12.5153 -0.9901 -6.6863 48 1 12.2940 -2.6010 -5.9623 49 1 7.3720 0.3026 -8.9148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700970162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:09 Heat of formation + Delta-G solvation = 5.403987 kcal Electronic energy + Delta-G solvation = -29883.129457 eV Core-core repulsion = 25656.861189 eV Total energy + Delta-G solvation = -4226.268268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.79367 -39.96372 -37.65990 -36.42324 -35.67665 -35.30075 -34.53554 -32.77897 -31.52405 -30.49696 -29.53545 -28.50826 -27.04687 -26.09118 -25.39552 -23.94160 -22.95315 -21.74505 -21.26911 -20.83970 -19.13709 -18.29531 -17.68002 -17.14383 -16.89972 -16.33401 -15.99665 -15.60870 -15.49156 -15.12589 -14.89210 -14.43181 -14.20356 -13.90387 -13.72094 -13.56452 -13.42397 -13.21341 -13.10195 -12.73130 -12.68207 -12.62680 -12.44629 -12.37818 -12.12713 -11.88157 -11.82804 -11.51489 -11.40456 -11.29069 -11.25782 -11.04207 -10.82977 -10.58361 -10.42831 -10.16559 -10.09474 -9.83751 -9.58043 -9.56678 -8.53332 -8.35458 -6.71641 -5.95193 -3.35380 0.91882 1.97787 2.55279 2.74237 3.06102 3.32576 3.39118 3.47824 3.52538 3.80132 4.35866 4.49926 4.55336 4.62293 4.77383 4.81507 4.91466 5.01788 5.04091 5.05737 5.09304 5.13994 5.18357 5.28979 5.31049 5.34632 5.41773 5.42399 5.59978 5.63063 5.66562 5.73429 5.84365 5.89430 5.93631 5.97169 6.03224 6.35282 6.44430 6.54221 6.74025 6.78025 6.85826 7.44428 7.94867 8.07006 8.14179 8.30133 8.43839 9.02794 9.75439 10.16391 11.20609 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.002470 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.158749 B =11331.201436 C =12628.837190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.386 5.386 4 O 0.079 5.921 5 C 0.190 3.810 6 C -0.027 4.027 7 C -0.105 4.105 8 C -0.134 4.134 9 C 0.506 3.494 10 O -0.529 6.529 11 N -0.609 5.609 12 C 0.082 3.918 13 C 0.082 3.918 14 C 0.076 3.924 15 H 0.108 0.892 16 O -0.549 6.549 17 C 0.113 3.887 18 N -0.601 5.601 19 C 0.131 3.869 20 C -0.271 4.271 21 H 0.077 0.923 22 C 0.036 3.964 23 N -0.895 5.895 24 Si 0.874 3.126 25 H -0.284 1.284 26 H -0.300 1.300 27 H -0.271 1.271 28 N -0.484 5.484 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.354 0.646 44 H 0.040 0.960 45 H 0.062 0.938 46 H 0.002 0.998 47 H 0.040 0.960 48 H 0.032 0.968 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 -10.617 21.655 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.095 5.095 4 O 0.021 5.979 5 C -0.031 4.031 6 C -0.066 4.066 7 C -0.144 4.144 8 C -0.174 4.174 9 C 0.294 3.706 10 O -0.405 6.405 11 N -0.343 5.343 12 C -0.061 4.061 13 C -0.042 4.042 14 C 0.013 3.987 15 H 0.126 0.874 16 O -0.353 6.353 17 C -0.015 4.015 18 N -0.325 5.325 19 C -0.014 4.014 20 C -0.400 4.400 21 H 0.095 0.905 22 C -0.165 4.165 23 N -0.536 5.536 24 Si 0.704 3.296 25 H -0.212 1.212 26 H -0.228 1.228 27 H -0.195 1.195 28 N -0.218 5.218 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.199 0.801 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.020 0.980 47 H 0.059 0.941 48 H 0.051 0.949 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.092 -9.162 21.213 24.171 hybrid contribution -0.032 -1.456 -0.734 1.631 sum -7.124 -10.618 20.479 24.143 Atomic orbital electron populations 1.20134 0.82977 1.04793 1.04159 1.25916 1.00640 0.83558 1.00591 1.74648 0.89415 1.23957 1.21492 1.85303 1.22320 1.24794 1.65498 1.28791 0.97019 0.82225 0.95028 1.20321 0.88006 0.98183 1.00125 1.21366 0.97271 1.02232 0.93566 1.21616 0.98748 1.02071 0.94984 1.20593 0.80417 0.78106 0.91486 1.90791 1.53478 1.49873 1.46345 1.47748 1.25234 1.54161 1.07119 1.21783 0.96587 0.98357 0.89390 1.22333 1.00613 0.98748 0.82505 1.23152 0.83715 0.99377 0.92445 0.87443 1.86658 1.36835 1.40525 1.71250 1.21751 0.95716 0.91288 0.92703 1.43820 1.00262 1.17365 1.71014 1.21043 0.84636 0.99114 0.96585 1.18774 1.10992 0.85434 1.24762 0.90525 1.25482 0.97191 0.96274 0.97513 1.69879 1.13976 1.30025 1.39712 0.86952 0.77984 0.85090 0.79528 1.21227 1.22771 1.19542 1.71895 0.99759 1.29437 1.20741 0.89404 0.89461 0.89008 0.87650 0.87078 0.90067 0.89880 0.88322 0.88681 0.93173 0.90448 0.91186 0.90799 0.89212 0.80096 0.94186 0.92064 0.98002 0.94095 0.94939 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.01 0.38 -0.09 16 2 C 0.17 1.93 8.22 -156.37 -1.28 0.64 16 3 N -0.39 -5.06 12.16 30.89 0.38 -4.69 16 4 O 0.08 0.97 11.31 18.11 0.20 1.17 16 5 C 0.19 2.01 7.77 -13.06 -0.10 1.90 16 6 C -0.03 -0.19 5.84 -27.88 -0.16 -0.35 16 7 C -0.11 -1.02 4.49 -26.73 -0.12 -1.14 16 8 C -0.13 -1.16 4.25 -27.88 -0.12 -1.28 16 9 C 0.51 7.25 7.67 -10.98 -0.08 7.16 16 10 O -0.53 -10.43 15.56 5.56 0.09 -10.35 16 11 N -0.61 -7.82 2.84 -181.57 -0.52 -8.34 16 12 C 0.08 0.67 10.06 59.84 0.60 1.27 16 13 C 0.08 1.22 5.06 -4.04 -0.02 1.20 16 14 C 0.08 1.40 3.48 -26.73 -0.09 1.31 16 15 H 0.11 2.54 8.14 -51.93 -0.42 2.12 16 16 O -0.55 -8.86 10.88 -35.23 -0.38 -9.24 16 17 C 0.11 2.38 4.21 -4.04 -0.02 2.36 16 18 N -0.60 -14.57 2.39 -181.12 -0.43 -15.00 16 19 C 0.13 2.67 10.44 59.85 0.62 3.29 16 20 C -0.27 -7.85 9.90 -15.06 -0.15 -8.00 16 21 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 22 C 0.04 1.08 5.29 -17.43 -0.09 0.99 16 23 N -0.90 -28.33 13.97 55.49 0.78 -27.55 16 24 Si 0.87 22.72 25.09 -169.99 -4.27 18.45 16 25 H -0.28 -7.18 6.68 56.52 0.38 -6.80 16 26 H -0.30 -7.90 7.11 56.52 0.40 -7.49 16 27 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 28 N -0.48 -5.79 11.55 -9.87 -0.11 -5.90 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.93 8.10 -51.92 -0.42 0.51 16 35 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 36 H 0.10 0.66 7.40 -51.93 -0.38 0.28 16 37 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 38 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.62 7.11 -51.93 -0.37 0.25 16 40 H 0.07 0.45 6.44 -51.93 -0.33 0.11 16 41 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 42 H 0.09 1.57 7.42 -51.93 -0.39 1.18 16 43 H 0.35 4.19 8.78 45.56 0.40 4.59 16 44 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 45 H 0.06 1.46 3.37 -51.93 -0.17 1.29 16 46 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 47 H 0.04 0.84 8.04 -51.93 -0.42 0.42 16 48 H 0.03 0.55 6.87 -51.93 -0.36 0.19 16 49 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 401.21 15.07 6.05 6.05 Total: -1.00 -38.88 401.21 -5.95 -44.83 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.09 Total: 1.30 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -0.64 Total: 9.27 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.09 Total: -61.48 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.09 Total: -18.42 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.27 Total: 18.45 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.88 -5.95 -44.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700970162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.229 kcal (2) G-P(sol) polarization free energy of solvation -38.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds