Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29946 * 126.28398 * 2 1 4 4 O 1.21294 * 110.25217 * 179.68633 * 3 2 1 5 5 C 1.33639 * 109.81004 * 0.46134 * 4 3 2 6 6 C 1.50708 * 126.55577 * 179.80035 * 5 4 3 7 7 C 1.52998 * 109.47283 * 269.69827 * 6 5 4 8 8 C 1.52998 * 109.47160 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46905 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00350 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99436 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00367 * 0.02562 * 11 9 8 13 13 C 1.46499 * 119.99901 * 180.02562 * 11 9 8 14 14 C 1.52997 * 109.47285 * 89.99948 * 13 11 9 15 15 H 1.09004 * 109.47412 * 305.00668 * 14 13 11 16 16 O 1.42909 * 109.46836 * 65.00238 * 14 13 11 17 17 C 1.52996 * 109.47400 * 185.00215 * 14 13 11 18 18 N 1.46504 * 109.47273 * 180.02562 * 17 14 13 19 19 C 1.46498 * 120.00028 * 89.99909 * 18 17 14 20 20 C 1.36936 * 119.99761 * 270.00166 * 18 17 14 21 21 H 1.08000 * 119.99952 * 142.09460 * 20 18 17 22 22 C 1.38811 * 119.99979 * 322.08924 * 20 18 17 23 23 N 1.31618 * 119.99781 * 157.11638 * 22 20 18 24 24 Si 1.86800 * 120.00238 * 337.11641 * 22 20 18 25 25 H 1.48499 * 109.46955 * 95.72922 * 24 22 20 26 26 H 1.48496 * 109.46965 * 215.73000 * 24 22 20 27 27 H 1.48500 * 109.46818 * 335.73293 * 24 22 20 28 28 N 1.31133 * 106.90003 * 359.54620 * 5 4 3 29 29 H 1.09002 * 109.47578 * 270.02542 * 1 2 3 30 30 H 1.08999 * 109.47734 * 30.02865 * 1 2 3 31 31 H 1.08999 * 109.46966 * 150.03171 * 1 2 3 32 32 H 1.09003 * 109.46528 * 29.69502 * 6 5 4 33 33 H 1.08991 * 109.47051 * 149.69268 * 6 5 4 34 34 H 1.09007 * 109.46723 * 299.99699 * 7 6 5 35 35 H 1.09001 * 109.47405 * 59.99210 * 7 6 5 36 36 H 1.08994 * 109.47025 * 299.99697 * 8 7 6 37 37 H 1.09000 * 109.46830 * 59.99448 * 8 7 6 38 38 H 1.09000 * 109.47691 * 89.99319 * 12 11 9 39 39 H 1.09001 * 109.47165 * 209.99895 * 12 11 9 40 40 H 1.09005 * 109.47128 * 329.99760 * 12 11 9 41 41 H 1.09002 * 109.47518 * 210.00559 * 13 11 9 42 42 H 1.09004 * 109.47217 * 330.00110 * 13 11 9 43 43 H 0.96694 * 113.99908 * 60.00142 * 16 14 13 44 44 H 1.09000 * 109.46947 * 300.00171 * 17 14 13 45 45 H 1.08993 * 109.47278 * 60.00291 * 17 14 13 46 46 H 1.09001 * 109.47339 * 89.55874 * 19 18 17 47 47 H 1.08997 * 109.47252 * 209.56347 * 19 18 17 48 48 H 1.09006 * 109.46980 * 329.56061 * 19 18 17 49 49 H 0.97004 * 120.00168 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4417 0.7125 0.0062 5 6 3.5299 -0.6210 0.0008 6 6 4.7970 -1.4368 0.0013 7 6 5.2263 -1.7132 -1.4410 8 6 6.5130 -2.5409 -1.4404 9 6 6.9355 -2.8136 -2.8611 10 8 6.2729 -2.3875 -3.7832 11 7 8.0502 -3.5302 -3.1068 12 6 8.8508 -4.0444 -1.9930 13 6 8.4612 -3.7948 -4.4878 14 6 9.3843 -2.6736 -4.9690 15 1 8.8863 -1.7125 -4.8403 16 8 10.5921 -2.6902 -4.2053 17 6 9.7134 -2.8834 -6.4483 18 7 10.5978 -1.8100 -6.9089 19 6 12.0512 -1.9678 -6.8157 20 6 10.0657 -0.6593 -7.4265 21 1 10.5274 0.2932 -7.2120 22 6 8.9331 -0.7171 -8.2269 23 7 8.1637 0.3430 -8.3558 24 14 8.5009 -2.2992 -9.1210 25 1 7.5197 -3.0704 -8.3161 26 1 7.9096 -1.9745 -10.4439 27 1 9.7297 -3.1104 -9.3136 28 7 2.3030 -1.0841 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5133 32 1 5.5841 -0.8850 0.5153 33 1 4.6206 -2.3816 0.5153 34 1 4.4391 -2.2649 -1.9549 35 1 5.4026 -0.7683 -1.9550 36 1 7.2999 -1.9888 -0.9266 37 1 6.3370 -3.4857 -0.9262 38 1 8.4937 -5.0364 -1.7163 39 1 9.8963 -4.1058 -2.2949 40 1 8.7581 -3.3737 -1.1387 41 1 8.9911 -4.7464 -4.5332 42 1 7.5795 -3.8391 -5.1272 43 1 11.0886 -3.5172 -4.2726 44 1 10.2114 -3.8444 -6.5770 45 1 8.7923 -2.8707 -7.0308 46 1 12.4259 -2.4298 -7.7291 47 1 12.5153 -0.9901 -6.6863 48 1 12.2940 -2.6010 -5.9623 49 1 7.3720 0.3026 -8.9148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700970162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = -27.189928 kcal Electronic energy + Delta-G solvation = -29884.542835 eV Core-core repulsion = 25656.861189 eV Total energy + Delta-G solvation = -4227.681646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.66188 -41.05525 -39.11368 -37.27217 -36.92193 -36.34609 -35.90933 -33.71429 -33.62181 -31.76338 -30.27184 -29.42273 -28.20847 -27.74933 -26.68122 -24.86865 -24.02850 -23.07731 -22.62487 -22.04523 -20.16418 -19.18713 -19.00059 -18.53943 -17.97866 -17.50727 -17.37673 -17.08337 -16.62455 -16.41856 -15.89848 -15.70547 -15.47461 -15.17429 -14.87062 -14.64579 -14.51579 -14.34479 -14.28092 -13.94527 -13.83019 -13.53579 -13.44239 -13.40148 -13.21996 -13.13594 -12.82204 -12.77273 -12.66613 -12.40385 -12.37865 -12.29438 -12.13266 -12.08294 -11.97046 -11.75716 -11.62315 -11.31146 -10.96554 -10.79168 -10.64929 -9.54105 -8.68120 -8.25398 -5.61589 0.07433 1.13195 1.24774 1.33950 1.46597 1.69118 1.80381 2.13022 2.37331 2.66440 2.96849 3.04484 3.40724 3.54877 3.62789 3.77462 3.97149 4.00108 4.06501 4.10845 4.27065 4.36964 4.40638 4.44797 4.49957 4.52671 4.53848 4.65077 4.67345 4.68339 4.74138 4.81900 4.85669 4.86055 4.90599 5.03138 5.08071 5.10669 5.13491 5.15619 5.24274 5.27298 5.60120 5.89362 6.11424 6.48165 6.94838 7.03846 7.09515 7.27393 7.61320 8.01267 8.94888 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.002470 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.158749 B =11331.201436 C =12628.837190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.159 3.841 3 N -0.417 5.417 4 O 0.062 5.938 5 C 0.192 3.808 6 C -0.018 4.018 7 C -0.101 4.101 8 C -0.120 4.120 9 C 0.489 3.511 10 O -0.602 6.602 11 N -0.608 5.608 12 C 0.073 3.927 13 C 0.088 3.912 14 C 0.098 3.902 15 H 0.041 0.959 16 O -0.551 6.551 17 C 0.105 3.895 18 N -0.616 5.616 19 C 0.130 3.870 20 C -0.261 4.261 21 H 0.031 0.969 22 C -0.027 4.027 23 N -0.950 5.950 24 Si 0.948 3.052 25 H -0.278 1.278 26 H -0.307 1.307 27 H -0.248 1.248 28 N -0.506 5.506 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.129 0.871 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.056 0.944 43 H 0.381 0.619 44 H 0.088 0.912 45 H 0.031 0.969 46 H 0.013 0.987 47 H 0.026 0.974 48 H 0.073 0.927 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.110 -14.827 24.403 28.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 N -0.129 5.129 4 O 0.007 5.993 5 C -0.028 4.028 6 C -0.056 4.056 7 C -0.140 4.140 8 C -0.159 4.159 9 C 0.280 3.720 10 O -0.483 6.483 11 N -0.340 5.340 12 C -0.068 4.068 13 C -0.036 4.036 14 C 0.035 3.965 15 H 0.059 0.941 16 O -0.357 6.357 17 C -0.021 4.021 18 N -0.341 5.341 19 C -0.014 4.014 20 C -0.392 4.392 21 H 0.049 0.951 22 C -0.223 4.223 23 N -0.594 5.594 24 Si 0.776 3.224 25 H -0.205 1.205 26 H -0.236 1.236 27 H -0.171 1.171 28 N -0.240 5.240 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.147 0.853 37 H 0.157 0.843 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.140 0.860 42 H 0.074 0.926 43 H 0.229 0.771 44 H 0.106 0.894 45 H 0.049 0.951 46 H 0.032 0.968 47 H 0.045 0.955 48 H 0.092 0.908 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.325 -13.452 24.024 28.044 hybrid contribution -0.420 -0.131 -1.497 1.560 sum -5.745 -13.583 22.527 26.926 Atomic orbital electron populations 1.20342 0.80525 1.05525 1.05692 1.26676 1.02241 0.83211 0.99235 1.74633 0.89896 1.25064 1.23341 1.85256 1.22216 1.25740 1.66086 1.29601 0.98029 0.81875 0.93324 1.20542 0.87179 0.99539 0.98337 1.21228 0.97474 1.00348 0.94964 1.21669 0.98475 1.04279 0.91524 1.21722 0.80151 0.77000 0.93172 1.90766 1.55864 1.52713 1.48924 1.47915 1.25198 1.53418 1.07458 1.22158 0.96191 1.00254 0.88210 1.22101 0.98778 0.99124 0.83608 1.22473 0.85066 0.97584 0.91370 0.94071 1.86611 1.36133 1.42670 1.70333 1.21906 0.94385 0.92134 0.93663 1.43971 1.02326 1.16472 1.71285 1.21167 0.81988 0.99427 0.98818 1.18645 1.10408 0.85962 1.24139 0.95095 1.26188 0.97470 0.99977 0.98689 1.70033 1.15032 1.32953 1.41421 0.85774 0.78528 0.80849 0.77267 1.20493 1.23572 1.17137 1.71919 1.00437 1.29821 1.21834 0.87351 0.88834 0.88100 0.84369 0.83889 0.92697 0.93515 0.85330 0.84264 0.90188 0.89853 0.88972 0.85997 0.92568 0.77089 0.89435 0.95128 0.96836 0.95473 0.90813 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.51 71.24 0.75 -0.16 16 2 C 0.16 3.74 8.22 138.46 1.14 4.88 16 3 N -0.42 -11.29 12.16 -60.36 -0.73 -12.02 16 4 O 0.06 1.55 11.31 74.88 0.85 2.40 16 5 C 0.19 3.99 7.77 88.38 0.69 4.67 16 6 C -0.02 -0.20 5.84 29.85 0.17 -0.02 16 7 C -0.10 -1.92 4.49 30.59 0.14 -1.78 16 8 C -0.12 -1.75 4.25 29.85 0.13 -1.63 16 9 C 0.49 13.77 7.67 87.66 0.67 14.44 16 10 O -0.60 -25.31 15.56 -3.02 -0.05 -25.35 16 11 N -0.61 -14.17 2.84 -846.76 -2.40 -16.57 16 12 C 0.07 0.81 10.06 127.77 1.29 2.09 16 13 C 0.09 2.48 5.06 86.38 0.44 2.91 16 14 C 0.10 3.55 3.48 30.59 0.11 3.66 16 15 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 16 O -0.55 -16.00 10.88 -148.98 -1.62 -17.62 16 17 C 0.11 4.27 4.21 86.38 0.36 4.63 16 18 N -0.62 -29.49 2.39 -726.95 -1.74 -31.23 16 19 C 0.13 4.97 10.44 127.77 1.33 6.30 16 20 C -0.26 -15.74 9.90 84.03 0.83 -14.90 16 21 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 22 C -0.03 -1.68 5.29 84.86 0.45 -1.23 16 23 N -0.95 -63.73 13.97 21.65 0.30 -63.43 16 24 Si 0.95 48.41 25.09 68.60 1.72 50.13 16 25 H -0.28 -13.73 6.68 99.48 0.66 -13.07 16 26 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 27 H -0.25 -11.60 7.11 99.48 0.71 -10.89 16 28 N -0.51 -11.99 11.55 -303.22 -3.50 -15.49 16 29 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 1.32 8.10 -2.38 -0.02 1.30 16 35 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 36 H 0.13 1.16 7.40 -2.39 -0.02 1.15 16 37 H 0.14 0.86 8.11 -2.39 -0.02 0.84 16 38 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.08 0.87 7.11 -2.39 -0.02 0.85 16 40 H 0.09 0.64 6.44 -2.38 -0.02 0.63 16 41 H 0.12 2.22 8.07 -2.39 -0.02 2.20 16 42 H 0.06 1.98 7.42 -2.38 -0.02 1.96 16 43 H 0.38 6.84 8.78 -74.06 -0.65 6.19 16 44 H 0.09 2.72 8.07 -2.39 -0.02 2.71 16 45 H 0.03 1.45 3.37 -2.39 -0.01 1.44 16 46 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.03 1.09 8.04 -2.39 -0.02 1.07 16 48 H 0.07 2.18 6.87 -2.38 -0.02 2.17 16 49 H 0.26 16.65 8.31 -92.71 -0.77 15.88 16 Total: -1.00 -96.48 401.21 1.59 -94.89 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.27 Total: 10.43 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 8.49 Total: 23.87 kcal Atomic # 7 Polarization: -130.67 SS G_CDS: -8.07 Total: -138.75 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.82 Total: -40.57 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 1.72 Total: 50.13 kcal Total: -96.48 1.59 -94.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700970162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.700 kcal (2) G-P(sol) polarization free energy of solvation -96.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds