Wall clock time and date at job start Sat Apr 11 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 110.27176 * 2 1 4 4 O 1.21278 * 120.00171 * 240.62392 * 3 2 1 5 5 N 1.34773 * 119.99402 * 60.61907 * 3 2 1 6 6 C 1.46501 * 119.99582 * 180.02562 * 5 3 2 7 7 C 1.50708 * 109.47034 * 180.02562 * 6 5 3 8 8 C 1.29451 * 117.69636 * 95.02209 * 7 6 5 9 9 C 1.49922 * 123.63021 * 180.66617 * 8 7 6 10 10 N 1.47009 * 109.38059 * 349.34701 * 9 8 7 11 11 C 1.36929 * 121.37493 * 222.86621 * 10 9 8 12 12 H 1.08001 * 120.00188 * 155.77784 * 11 10 9 13 13 C 1.38818 * 120.00057 * 335.77183 * 11 10 9 14 14 N 1.31614 * 119.99847 * 344.59416 * 13 11 10 15 15 Si 1.86798 * 119.99792 * 164.31506 * 13 11 10 16 16 H 1.48497 * 109.47375 * 266.28556 * 15 13 11 17 17 H 1.48493 * 109.47477 * 26.29034 * 15 13 11 18 18 H 1.48504 * 109.46870 * 146.28743 * 15 13 11 19 19 C 1.47334 * 117.24837 * 42.59605 * 10 9 8 20 20 C 1.49965 * 117.69022 * 274.99970 * 7 6 5 21 21 C 1.54354 * 110.38526 * 237.87415 * 2 1 3 22 22 C 1.54348 * 102.38720 * 267.37831 * 21 2 1 23 23 C 1.51366 * 105.17370 * 333.65545 * 22 21 2 24 24 C 1.38503 * 130.38814 * 197.19163 * 23 22 21 25 25 C 1.38102 * 120.21169 * 180.02562 * 24 23 22 26 26 C 1.38254 * 119.93387 * 359.97041 * 25 24 23 27 27 C 1.38105 * 119.94007 * 0.02562 * 26 25 24 28 28 C 1.38212 * 109.75919 * 17.18593 * 23 22 21 29 29 H 1.09003 * 109.46788 * 60.70045 * 1 2 3 30 30 H 1.09002 * 109.47026 * 180.69632 * 1 2 3 31 31 H 1.08995 * 109.46939 * 300.69785 * 1 2 3 32 32 H 0.97004 * 120.00421 * 0.02562 * 5 3 2 33 33 H 1.08998 * 109.47668 * 60.00022 * 6 5 3 34 34 H 1.08998 * 109.47399 * 299.99727 * 6 5 3 35 35 H 1.08001 * 118.17171 * 0.83208 * 8 7 6 36 36 H 1.08996 * 109.48281 * 229.33486 * 9 8 7 37 37 H 1.08998 * 109.34916 * 109.28143 * 9 8 7 38 38 H 0.97003 * 119.99963 * 179.72562 * 14 13 11 39 39 H 1.09004 * 109.78400 * 58.08077 * 19 10 9 40 40 H 1.09000 * 109.78054 * 178.88926 * 19 10 9 41 41 H 1.08998 * 109.31856 * 40.71466 * 20 7 6 42 42 H 1.09004 * 109.16060 * 281.19133 * 20 7 6 43 43 H 1.08994 * 110.82552 * 25.60236 * 21 2 1 44 44 H 1.08999 * 110.82353 * 149.15893 * 21 2 1 45 45 H 1.09004 * 110.30221 * 214.72782 * 22 21 2 46 46 H 1.09006 * 110.38556 * 92.62247 * 22 21 2 47 47 H 1.07998 * 119.89220 * 359.96952 * 24 23 22 48 48 H 1.08004 * 120.03295 * 179.97438 * 25 24 23 49 49 H 1.08008 * 120.02959 * 179.97438 * 26 25 24 50 50 H 1.07995 * 119.88990 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0521 1.4137 0.0000 4 8 2.7455 1.8041 -0.9152 5 7 1.7484 2.2441 1.0171 6 6 2.2555 3.6186 1.0169 7 6 1.7762 4.3311 2.2554 8 6 2.5668 4.3541 3.2802 9 6 2.2195 5.0114 4.5821 10 7 0.9989 5.8132 4.4135 11 6 0.8886 7.0661 4.9548 12 1 0.2016 7.7809 4.5264 13 6 1.6597 7.4176 6.0544 14 7 2.2615 6.4847 6.7613 15 14 1.8495 9.2151 6.5258 16 1 3.0791 9.7639 5.8997 17 1 0.6684 9.9791 6.0500 18 1 1.9519 9.3313 8.0027 19 6 -0.0984 5.2155 3.6329 20 6 0.4172 4.9637 2.2135 21 6 2.0677 -0.7694 -1.2253 22 6 2.2476 -2.1971 -0.6670 23 6 2.4675 -2.0163 0.8197 24 6 2.9874 -2.8876 1.7625 25 6 3.0943 -2.4991 3.0834 26 6 2.6818 -1.2364 3.4667 27 6 2.1633 -0.3661 2.5280 28 6 2.0553 -0.7540 1.2029 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3633 0.5246 0.8836 32 1 1.1940 1.9318 1.7493 33 1 1.8900 4.1406 0.1326 34 1 3.3453 3.6038 1.0055 35 1 3.5309 3.8756 3.1913 36 1 3.0400 5.6580 4.8932 37 1 2.0507 4.2458 5.3394 38 1 2.8035 6.7306 7.5273 39 1 -0.4033 4.2726 4.0871 40 1 -0.9450 5.9013 3.6016 41 1 -0.2731 4.3012 1.6914 42 1 0.4803 5.9119 1.6794 43 1 1.3415 -0.7599 -2.0381 44 1 3.0226 -0.3582 -1.5526 45 1 3.1152 -2.6747 -1.1224 46 1 1.3516 -2.7911 -0.8473 47 1 3.3094 -3.8742 1.4638 48 1 3.4997 -3.1810 3.8163 49 1 2.7643 -0.9311 4.4994 50 1 1.8409 0.6199 2.8284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701065406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:21 Heat of formation + Delta-G solvation = 6.641124 kcal Electronic energy + Delta-G solvation = -29747.613032 eV Core-core repulsion = 25932.247674 eV Total energy + Delta-G solvation = -3815.365358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06901 -40.16445 -39.31786 -36.97010 -36.37834 -34.68016 -33.21827 -32.35868 -31.45256 -30.75598 -29.68154 -28.54234 -26.53025 -25.76162 -24.41978 -23.66211 -23.19253 -22.55670 -21.80708 -20.72211 -19.50195 -18.46126 -17.38186 -17.21966 -17.14655 -16.92571 -16.41852 -16.08560 -15.86610 -15.80129 -15.49951 -15.25369 -15.14609 -14.70207 -14.51253 -14.31873 -13.97017 -13.94936 -13.74618 -13.46333 -13.36896 -13.27172 -13.15219 -12.94072 -12.80974 -12.63588 -12.56761 -12.39334 -12.22075 -12.11060 -12.04331 -11.74643 -11.72366 -11.65231 -11.29454 -10.93607 -10.69982 -10.14606 -9.76556 -9.67511 -9.47048 -8.76615 -7.89456 -5.30880 0.36468 0.44826 1.14624 1.46127 1.48100 1.56448 1.56798 2.35624 2.50122 2.82714 3.27708 3.32191 3.42112 3.59025 3.72156 3.86192 3.93065 3.93682 4.10213 4.13596 4.18788 4.32196 4.40670 4.50916 4.56258 4.60304 4.63259 4.65726 4.70502 4.72326 4.81537 4.86349 4.89421 4.92999 5.03588 5.07917 5.08393 5.15748 5.19167 5.23630 5.28998 5.34948 5.39959 5.45437 5.51965 5.60464 5.60920 5.66334 5.74134 6.07044 6.13071 6.32614 6.47283 7.12310 7.14632 7.82133 8.35955 9.19065 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.002641 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.468984 B =10597.766706 C =11525.584884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.035 4.035 3 C 0.522 3.478 4 O -0.579 6.579 5 N -0.710 5.710 6 C 0.165 3.835 7 C -0.139 4.139 8 C -0.142 4.142 9 C 0.207 3.793 10 N -0.614 5.614 11 C -0.257 4.257 12 H 0.071 0.929 13 C -0.053 4.053 14 N -0.938 5.938 15 Si 0.967 3.033 16 H -0.289 1.289 17 H -0.268 1.268 18 H -0.295 1.295 19 C 0.140 3.860 20 C -0.084 4.084 21 C -0.102 4.102 22 C -0.075 4.075 23 C -0.098 4.098 24 C -0.114 4.114 25 C -0.118 4.118 26 C -0.131 4.131 27 C -0.116 4.116 28 C -0.105 4.105 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.407 0.593 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.056 0.944 37 H 0.015 0.985 38 H 0.249 0.751 39 H 0.028 0.972 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.144 0.856 48 H 0.146 0.854 49 H 0.133 0.867 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 -21.385 -13.833 25.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.038 4.038 3 C 0.310 3.690 4 O -0.459 6.459 5 N -0.362 5.362 6 C 0.042 3.958 7 C -0.139 4.139 8 C -0.162 4.162 9 C 0.082 3.918 10 N -0.338 5.338 11 C -0.387 4.387 12 H 0.088 0.912 13 C -0.248 4.248 14 N -0.585 5.585 15 Si 0.796 3.204 16 H -0.216 1.216 17 H -0.192 1.192 18 H -0.221 1.221 19 C 0.014 3.986 20 C -0.123 4.123 21 C -0.139 4.139 22 C -0.112 4.112 23 C -0.098 4.098 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.149 4.149 27 C -0.135 4.135 28 C -0.106 4.106 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.245 0.755 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.074 0.926 37 H 0.032 0.968 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.122 0.878 47 H 0.162 0.838 48 H 0.164 0.836 49 H 0.151 0.849 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.160 -21.037 -14.343 25.553 hybrid contribution 0.333 1.254 1.315 1.848 sum -1.827 -19.783 -13.028 23.758 Atomic orbital electron populations 1.21819 0.89480 1.04338 1.03184 1.20416 0.98568 0.89674 0.95156 1.20940 0.79264 0.87814 0.81003 1.90653 1.39966 1.77932 1.37301 1.46199 1.53295 1.12137 1.24536 1.20255 0.97891 0.81377 0.96244 1.20612 0.97700 1.01299 0.94323 1.22858 0.98856 0.98454 0.96055 1.19283 0.89393 0.92433 0.90690 1.44382 1.12300 1.15804 1.61357 1.19520 1.22404 0.89269 1.07469 0.91169 1.25732 1.01783 1.01283 0.96046 1.70165 1.36742 1.32472 1.19090 0.85247 0.78094 0.80560 0.76541 1.21614 1.19219 1.22132 1.21133 0.90479 0.96334 0.90627 1.20706 0.93521 0.99897 0.98141 1.22335 1.02243 0.93895 0.95458 1.21110 1.03864 0.96862 0.89358 1.20855 0.97954 0.93937 0.97011 1.20938 0.99592 1.00226 0.92388 1.21399 0.99257 0.96354 0.96557 1.21302 0.99218 0.94484 0.99934 1.20819 1.00409 0.99931 0.92302 1.20277 1.01049 0.96083 0.93173 0.90864 0.89526 0.91740 0.75546 0.91099 0.92451 0.87367 0.92610 0.96769 0.94143 0.95421 0.92131 0.89336 0.91739 0.88288 0.91559 0.89270 0.87817 0.83789 0.83619 0.84917 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.39 71.98 0.60 -1.37 16 2 C -0.04 -0.70 0.72 -53.00 -0.04 -0.74 16 3 C 0.52 13.97 6.48 87.66 0.57 14.54 16 4 O -0.58 -19.65 15.51 -3.02 -0.05 -19.70 16 5 N -0.71 -17.95 4.93 -466.78 -2.30 -20.25 16 6 C 0.17 4.77 5.66 85.64 0.48 5.26 16 7 C -0.14 -4.52 5.22 -15.13 -0.08 -4.59 16 8 C -0.14 -5.34 9.46 26.98 0.26 -5.08 16 9 C 0.21 9.96 5.20 85.29 0.44 10.40 16 10 N -0.61 -30.51 3.01 -704.12 -2.12 -32.63 16 11 C -0.26 -14.04 9.70 84.04 0.82 -13.22 16 12 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 13 C -0.05 -2.98 5.01 84.86 0.43 -2.56 16 14 N -0.94 -55.12 11.09 21.65 0.24 -54.88 16 15 Si 0.97 44.99 29.58 68.60 2.03 47.02 16 16 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 19 C 0.14 5.49 6.58 86.25 0.57 6.05 16 20 C -0.08 -2.68 5.95 29.65 0.18 -2.51 16 21 C -0.10 -1.80 5.85 31.51 0.18 -1.61 16 22 C -0.08 -1.02 6.76 30.52 0.21 -0.82 16 23 C -0.10 -1.76 6.14 -19.60 -0.12 -1.88 16 24 C -0.11 -1.83 10.04 22.30 0.22 -1.60 16 25 C -0.12 -1.98 10.05 22.24 0.22 -1.76 16 26 C -0.13 -2.64 10.05 22.24 0.22 -2.41 16 27 C -0.12 -2.57 9.47 22.30 0.21 -2.36 16 28 C -0.11 -2.20 4.90 -19.60 -0.10 -2.30 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 32 H 0.41 9.22 5.92 -92.71 -0.55 8.67 16 33 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 34 H 0.06 1.78 7.78 -2.39 -0.02 1.76 16 35 H 0.11 3.73 7.73 -2.91 -0.02 3.71 16 36 H 0.06 3.06 6.42 -2.39 -0.02 3.05 16 37 H 0.01 0.75 8.14 -2.39 -0.02 0.74 16 38 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 39 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 2.32 7.96 -2.39 -0.02 2.30 16 41 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.10 1.38 7.90 -2.39 -0.02 1.36 16 44 H 0.07 1.51 7.06 -2.39 -0.02 1.49 16 45 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 48 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 49 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 50 H 0.11 2.55 5.92 -2.91 -0.02 2.54 16 Total: -1.00 -68.60 395.04 3.46 -65.13 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.39 Total: 23.86 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 5.28 Total: -8.56 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -4.18 Total: -107.76 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.05 Total: -19.70 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -68.60 3.46 -65.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701065406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.775 kcal (2) G-P(sol) polarization free energy of solvation -68.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds