Wall clock time and date at job start Sat Apr 11 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99901 * 2 1 4 4 H 1.48501 * 109.46581 * 239.99569 * 3 2 1 5 5 H 1.48501 * 109.47012 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47161 * 119.99774 * 3 2 1 7 7 C 1.38809 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00107 * 196.91912 * 7 2 1 9 9 N 1.36944 * 119.99943 * 16.92544 * 7 2 1 10 10 C 1.47152 * 120.98241 * 206.23492 * 9 7 2 11 11 C 1.53289 * 108.38573 * 230.51061 * 10 9 7 12 12 O 1.42960 * 109.22291 * 307.69778 * 11 10 9 13 13 C 1.42966 * 114.16552 * 62.57911 * 12 11 10 14 14 H 1.08999 * 109.51021 * 57.39628 * 13 12 11 15 15 C 1.53003 * 109.51030 * 177.49523 * 13 12 11 16 16 N 1.46503 * 109.47023 * 300.00017 * 15 13 12 17 17 C 1.34779 * 119.99490 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00500 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99368 * 179.97438 * 17 16 15 20 20 N 1.46502 * 109.46717 * 179.97438 * 19 17 16 21 21 C 1.34778 * 120.00127 * 179.97438 * 20 19 17 22 22 O 1.21588 * 119.99698 * 0.02562 * 21 20 19 23 23 N 1.34772 * 120.00207 * 180.02562 * 21 20 19 24 24 C 1.47016 * 125.64746 * 359.69125 * 23 21 20 25 25 C 1.54319 * 107.27608 * 180.97136 * 24 23 21 26 26 C 1.55152 * 102.86203 * 22.52467 * 25 24 23 27 27 C 1.47427 * 125.64678 * 180.02562 * 23 21 20 28 28 C 1.47150 * 120.98206 * 26.20818 * 9 7 2 29 29 H 0.97004 * 120.00044 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.67917 * 110.78425 * 10 9 7 31 31 H 1.09004 * 109.70924 * 350.25350 * 10 9 7 32 32 H 1.08995 * 109.51534 * 187.77096 * 11 10 9 33 33 H 1.09006 * 109.51306 * 67.61835 * 11 10 9 34 34 H 1.08994 * 109.46984 * 60.00144 * 15 13 12 35 35 H 1.09004 * 109.47135 * 180.02562 * 15 13 12 36 36 H 0.96999 * 120.00323 * 0.02562 * 16 15 13 37 37 H 1.08994 * 109.47495 * 299.99827 * 19 17 16 38 38 H 1.09005 * 109.47214 * 60.00570 * 19 17 16 39 39 H 0.97001 * 119.99994 * 0.02562 * 20 19 17 40 40 H 1.09003 * 109.88400 * 300.51379 * 24 23 21 41 41 H 1.08997 * 109.88592 * 61.68307 * 24 23 21 42 42 H 1.09007 * 110.92489 * 264.11309 * 25 24 23 43 43 H 1.08998 * 110.74711 * 140.85951 * 25 24 23 44 44 H 1.09000 * 111.00419 * 206.22972 * 26 25 24 45 45 H 1.08997 * 111.03786 * 82.39730 * 26 25 24 46 46 H 1.09004 * 110.36472 * 274.66990 * 27 23 21 47 47 H 1.08994 * 110.36793 * 36.88108 * 27 23 21 48 48 H 1.09003 * 109.68210 * 9.76590 * 28 9 7 49 49 H 1.08996 * 109.68268 * 249.21559 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2223 0.2727 9 7 1.3700 -2.3626 -0.3442 10 6 1.8340 -3.6634 0.1636 11 6 1.9812 -4.6214 -1.0239 12 8 0.7648 -4.6304 -1.7750 13 6 0.4243 -3.3677 -2.3525 14 1 1.2372 -3.0302 -2.9954 15 6 -0.8549 -3.5123 -3.1795 16 7 -0.6388 -4.4939 -4.2454 17 6 -1.6352 -4.7855 -5.1049 18 8 -2.7107 -4.2358 -4.9957 19 6 -1.4128 -5.7949 -6.2017 20 7 -2.6376 -5.9334 -6.9934 21 6 -2.6732 -6.7869 -8.0360 22 8 -1.6889 -7.4421 -8.3190 23 7 -3.7998 -6.9140 -8.7646 24 6 -5.0582 -6.1910 -8.5299 25 6 -6.0694 -6.6746 -9.5906 26 6 -5.5027 -8.0591 -10.0021 27 6 -3.9765 -7.8062 -9.9249 28 6 0.1973 -2.3454 -1.2330 29 1 -0.4850 0.8401 -0.0004 30 1 1.1058 -4.0628 0.8695 31 1 2.7973 -3.5422 0.6592 32 1 2.1901 -5.6264 -0.6573 33 1 2.8002 -4.2881 -1.6613 34 1 -1.6677 -3.8480 -2.5356 35 1 -1.1137 -2.5493 -3.6198 36 1 0.2212 -4.9339 -4.3325 37 1 -0.5998 -5.4589 -6.8452 38 1 -1.1539 -6.7581 -5.7620 39 1 -3.4228 -5.4104 -6.7678 40 1 -5.4323 -6.4127 -7.5303 41 1 -4.8954 -5.1186 -8.6376 42 1 -6.0913 -5.9976 -10.4447 43 1 -7.0640 -6.7783 -9.1569 44 1 -5.8050 -8.3191 -11.0165 45 1 -5.8066 -8.8318 -9.2959 46 1 -3.6265 -7.3188 -10.8349 47 1 -3.4424 -8.7432 -9.7678 48 1 0.0769 -1.3510 -1.6627 49 1 -0.6956 -2.6122 -0.6677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714468107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:59 Heat of formation + Delta-G solvation = -79.014661 kcal Electronic energy + Delta-G solvation = -29477.809491 eV Core-core repulsion = 25247.880556 eV Total energy + Delta-G solvation = -4229.928935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.63121 -39.67251 -38.51105 -37.73894 -35.06225 -34.53570 -34.33262 -32.04206 -31.42809 -31.03145 -29.47616 -28.20939 -27.11238 -25.23864 -23.67948 -23.30472 -21.79786 -21.58289 -20.67261 -20.24447 -19.66821 -18.72578 -17.17874 -16.97303 -16.60319 -16.40481 -16.18864 -15.65709 -15.61322 -15.10684 -14.78881 -14.58032 -14.35578 -13.99777 -13.97678 -13.68295 -13.51053 -13.38914 -13.23477 -13.04652 -12.90225 -12.80388 -12.57137 -12.12078 -11.79994 -11.66473 -11.58442 -11.21432 -11.14401 -10.87240 -10.78250 -10.48209 -10.45211 -10.33064 -10.13197 -9.96198 -9.70394 -9.44805 -9.14429 -9.00425 -8.83344 -8.59252 -6.80765 -5.89129 -3.32886 2.20824 2.52278 2.95708 3.15744 3.32460 3.38708 3.39213 3.74215 4.13287 4.19016 4.21187 4.39928 4.45973 4.64251 4.82186 4.93956 5.12679 5.15096 5.17337 5.20098 5.28576 5.31001 5.39976 5.42341 5.48677 5.51910 5.55624 5.69677 5.81106 5.87925 5.89415 5.94897 6.05460 6.13356 6.17722 6.29434 6.43535 6.54226 6.73747 6.75957 7.01268 7.41708 7.46870 7.66246 7.69022 7.78053 8.12477 8.28379 8.33091 9.06096 9.69026 10.25825 11.18986 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.001853 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.689529 B =15107.887978 C =15843.616683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.108 3.892 11 C 0.050 3.950 12 O -0.390 6.390 13 C 0.054 3.946 14 H 0.057 0.943 15 C 0.133 3.867 16 N -0.712 5.712 17 C 0.506 3.494 18 O -0.544 6.544 19 C 0.120 3.880 20 N -0.731 5.731 21 C 0.725 3.275 22 O -0.591 6.591 23 N -0.637 5.637 24 C 0.096 3.904 25 C -0.130 4.130 26 C -0.135 4.135 27 C 0.124 3.876 28 C 0.152 3.848 29 H 0.257 0.743 30 H 0.027 0.973 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.406 0.594 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.408 0.592 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.096 0.904 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 -14.282 -18.082 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.005 4.005 14 H 0.075 0.925 15 C 0.009 3.991 16 N -0.362 5.362 17 C 0.291 3.709 18 O -0.422 6.422 19 C -0.009 4.009 20 N -0.390 5.390 21 C 0.427 3.573 22 O -0.469 6.469 23 N -0.377 5.377 24 C -0.028 4.028 25 C -0.168 4.168 26 C -0.173 4.173 27 C 0.001 3.999 28 C 0.026 3.974 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.241 0.759 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.246 0.754 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.114 0.886 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.037 -14.323 -18.115 24.799 hybrid contribution 0.644 1.239 0.317 1.432 sum -8.393 -13.084 -17.798 23.630 Atomic orbital electron populations 1.70007 1.05250 1.25927 1.53411 1.25061 0.95366 0.98527 1.00621 0.86321 0.78896 0.83077 0.78189 1.20950 1.21501 1.20786 1.19149 0.92655 0.84479 1.42429 0.91360 1.44033 1.33710 1.01382 1.52630 1.21606 0.98658 0.87536 0.93983 1.23010 0.86111 0.99655 0.93994 1.87772 1.42244 1.31488 1.69481 1.23163 0.94942 0.86569 0.95868 0.92500 1.21475 0.97941 0.92163 0.87491 1.45868 1.15572 1.43836 1.30971 1.20439 0.84545 0.83063 0.82855 1.90693 1.25199 1.53015 1.73327 1.20896 0.88035 0.99572 0.92354 1.44738 1.16447 1.45970 1.31845 1.15272 0.82258 0.80468 0.79289 1.90935 1.33904 1.49955 1.72152 1.47520 1.11304 1.45937 1.32892 1.22048 0.84260 0.96740 0.99720 1.22603 0.98506 0.96976 0.98681 1.22810 0.94411 0.97417 1.02664 1.22079 0.96022 0.94164 0.87600 1.21305 0.89524 0.97579 0.89008 0.93322 0.95539 0.91942 0.89951 0.93798 0.90532 0.89795 0.75932 0.88427 0.88351 0.75414 0.91318 0.91326 0.90361 0.89818 0.89606 0.90474 0.91594 0.90275 0.88568 0.95043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.48 11.14 55.49 0.62 -24.86 16 2 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 3 Si 0.91 21.13 29.59 -169.99 -5.03 16.10 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.26 -6.87 9.65 -15.06 -0.15 -7.02 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -14.48 3.05 -171.84 -0.52 -15.00 16 10 C 0.11 2.20 6.73 -3.54 -0.02 2.18 16 11 C 0.05 0.85 6.98 37.31 0.26 1.11 16 12 O -0.39 -6.94 10.13 -35.23 -0.36 -7.30 16 13 C 0.05 0.98 2.87 -26.58 -0.08 0.90 16 14 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 15 C 0.13 2.12 5.37 -4.04 -0.02 2.10 16 16 N -0.71 -9.30 5.45 -60.29 -0.33 -9.63 16 17 C 0.51 6.69 7.90 -10.98 -0.09 6.60 16 18 O -0.54 -8.87 15.67 5.56 0.09 -8.78 16 19 C 0.12 1.32 6.15 -5.19 -0.03 1.29 16 20 N -0.73 -8.48 5.49 -66.41 -0.36 -8.84 16 21 C 0.73 9.22 8.49 -86.92 -0.74 8.48 16 22 O -0.59 -9.42 16.60 5.29 0.09 -9.33 16 23 N -0.64 -6.20 3.33 -176.26 -0.59 -6.78 16 24 C 0.10 0.66 6.14 -3.07 -0.02 0.64 16 25 C -0.13 -0.59 6.95 -24.90 -0.17 -0.76 16 26 C -0.13 -0.64 7.08 -24.59 -0.17 -0.81 16 27 C 0.12 0.95 6.91 -2.54 -0.02 0.94 16 28 C 0.15 3.49 4.73 -3.54 -0.02 3.48 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.41 4.52 8.35 -40.82 -0.34 4.18 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.41 4.57 6.42 -40.82 -0.26 4.31 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.68 8.03 -51.93 -0.42 0.26 16 48 H 0.10 2.43 6.14 -51.93 -0.32 2.11 16 49 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -33.64 396.03 -9.84 -43.48 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -8.07 Total: 5.86 kcal Atomic # 6 Polarization: 20.47 SS G_CDS: -1.35 Total: 19.12 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -1.19 Total: -65.12 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.18 Total: -25.41 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.64 -9.84 -43.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714468107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.533 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds