Wall clock time and date at job start Sat Apr 11 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.08998 * 109.46828 * 305.00171 * 5 4 2 7 7 C 1.53002 * 109.47219 * 185.00185 * 5 4 2 8 8 N 1.46497 * 109.47089 * 185.00099 * 7 5 4 9 9 C 1.36933 * 120.00275 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99871 * 359.97438 * 9 8 7 11 11 C 1.38810 * 120.00200 * 180.02562 * 9 8 7 12 12 N 1.31621 * 119.99993 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 120.00102 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47007 * 90.00478 * 13 11 9 15 15 H 1.48503 * 109.47009 * 210.00390 * 13 11 9 16 16 H 1.48497 * 109.46930 * 330.00240 * 13 11 9 17 17 N 1.46498 * 109.46986 * 64.99835 * 5 4 2 18 18 C 1.34776 * 120.00504 * 275.00413 * 17 5 4 19 19 O 1.21286 * 119.99623 * 359.97438 * 18 17 5 20 20 C 1.50692 * 120.00329 * 180.02562 * 18 17 5 21 21 N 1.46502 * 109.47314 * 179.97438 * 20 18 17 22 22 C 1.34766 * 124.17617 * 90.02441 * 21 20 18 23 23 O 1.21232 * 127.16312 * 359.92380 * 22 21 20 24 24 C 1.51583 * 105.68207 * 179.97438 * 22 21 20 25 25 N 1.47307 * 103.59275 * 359.97438 * 24 22 21 26 26 C 1.46510 * 126.68790 * 180.02562 * 25 24 22 27 27 C 1.33787 * 124.17727 * 269.72084 * 21 20 18 28 28 O 1.21538 * 123.76830 * 0.04104 * 27 21 20 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 35 35 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 36 36 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 37 37 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 38 38 H 1.08994 * 109.47090 * 305.00012 * 7 5 4 39 39 H 1.09001 * 109.47192 * 64.99844 * 7 5 4 40 40 H 0.97008 * 119.99967 * 359.97438 * 8 7 5 41 41 H 0.96999 * 120.00047 * 179.97438 * 12 11 9 42 42 H 0.97004 * 119.99437 * 95.00257 * 17 5 4 43 43 H 1.09009 * 109.46979 * 299.99797 * 20 18 17 44 44 H 1.08996 * 109.47693 * 59.99621 * 20 18 17 45 45 H 1.09006 * 110.60276 * 118.52746 * 24 22 21 46 46 H 1.09003 * 110.59581 * 241.46570 * 24 22 21 47 47 H 1.09000 * 109.47018 * 90.00287 * 26 25 24 48 48 H 1.09001 * 109.46815 * 209.99846 * 26 25 24 49 49 H 1.09004 * 109.46733 * 329.99672 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 3.9954 0.1611 -1.0528 7 6 4.0851 -1.4393 -2.4920 8 7 5.5303 -1.6551 -2.3878 9 6 6.2200 -2.1937 -3.4410 10 1 5.6983 -2.4599 -4.3485 11 6 7.5893 -2.3986 -3.3420 12 7 8.2521 -2.9168 -4.3542 13 14 8.4914 -1.9388 -1.7721 14 1 8.5016 -3.1016 -0.8485 15 1 9.8880 -1.5536 -2.0985 16 1 7.8018 -0.7958 -1.1216 17 7 3.9479 -1.6872 -0.0628 18 6 4.0652 -1.1632 1.1734 19 8 3.8539 0.0174 1.3541 20 6 4.4598 -2.0438 2.3308 21 7 4.5182 -1.2429 3.5561 22 6 3.4740 -1.0522 4.3864 23 8 2.3513 -1.4932 4.2644 24 6 3.9948 -0.1706 5.5041 25 7 5.4044 0.0537 5.1398 26 6 6.3856 0.8463 5.8851 27 6 5.6163 -0.6151 3.9921 28 8 6.6850 -0.6434 3.4140 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 1.6053 -1.7198 -1.2953 37 1 1.7516 -0.1582 -2.1370 38 1 3.5876 -2.3922 -2.6723 39 1 3.8778 -0.7593 -3.3183 40 1 5.9989 -1.4156 -1.5728 41 1 9.2090 -3.0597 -4.2851 42 1 4.1172 -2.6314 -0.2074 43 1 3.7232 -2.8384 2.4505 44 1 5.4387 -2.4821 2.1367 45 1 3.4508 0.7736 5.5330 46 1 3.9237 -0.6846 6.4627 47 1 6.8996 0.2068 6.6027 48 1 7.1115 1.2711 5.1918 49 1 5.8756 1.6507 6.4153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715387040.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:12 Heat of formation + Delta-G solvation = -56.094364 kcal Electronic energy + Delta-G solvation = -31723.703836 eV Core-core repulsion = 27494.768800 eV Total energy + Delta-G solvation = -4228.935036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.58264 -39.99577 -38.81835 -37.00884 -36.37429 -35.26496 -35.09730 -33.58555 -31.54898 -30.57868 -29.47046 -27.65681 -26.95136 -26.46142 -25.77808 -22.81800 -22.56609 -21.63713 -20.59775 -20.14885 -19.71566 -18.11186 -17.82576 -17.49916 -16.96388 -16.69865 -16.00888 -15.88500 -15.45040 -15.13543 -14.70649 -14.57555 -14.46002 -14.30783 -14.25379 -13.92056 -13.50426 -13.43424 -13.31930 -12.96376 -12.79179 -12.73476 -12.48356 -12.19012 -12.14748 -12.03610 -11.68251 -11.27960 -11.14363 -11.12553 -10.85686 -10.61843 -10.48862 -10.47789 -10.34157 -10.20360 -10.08517 -9.60926 -9.51949 -9.29971 -8.94401 -8.80086 -7.27373 -5.78724 -3.15223 1.40126 1.71113 2.57810 2.65805 2.77450 3.35338 3.39632 3.46619 3.49692 3.72426 4.33288 4.59001 4.60391 4.67262 4.75467 4.79468 4.84805 5.00729 5.06313 5.09778 5.11951 5.19618 5.29705 5.45612 5.48203 5.51916 5.55413 5.62195 5.78847 5.85517 5.94319 5.96383 6.02964 6.06921 6.08035 6.21618 6.34158 6.39038 6.55027 6.60540 6.73275 6.79084 6.83347 7.08268 7.61108 7.85308 7.96161 8.28763 8.39909 9.18549 9.90968 10.09928 11.39246 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009220 B = 0.004484 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.076962 B = 6242.732054 C = 8574.925803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.137 4.137 4 C -0.121 4.121 5 C 0.133 3.867 6 H 0.091 0.909 7 C 0.149 3.851 8 N -0.755 5.755 9 C -0.248 4.248 10 H 0.091 0.909 11 C 0.009 3.991 12 N -0.932 5.932 13 Si 0.881 3.119 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.276 1.276 17 N -0.708 5.708 18 C 0.499 3.501 19 O -0.524 6.524 20 C 0.096 3.904 21 N -0.558 5.558 22 C 0.528 3.472 23 O -0.468 6.468 24 C 0.067 3.933 25 N -0.631 5.631 26 C 0.122 3.878 27 C 0.703 3.297 28 O -0.532 6.532 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.042 0.958 40 H 0.363 0.637 41 H 0.260 0.740 42 H 0.405 0.595 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.833 5.420 22.748 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.194 4.194 4 C -0.160 4.160 5 C 0.029 3.971 6 H 0.109 0.891 7 C 0.022 3.978 8 N -0.401 5.401 9 C -0.377 4.377 10 H 0.109 0.891 11 C -0.188 4.188 12 N -0.580 5.580 13 Si 0.711 3.289 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.203 1.203 17 N -0.360 5.360 18 C 0.283 3.717 19 O -0.401 6.401 20 C -0.029 4.029 21 N -0.303 5.303 22 C 0.315 3.685 23 O -0.338 6.338 24 C -0.059 4.059 25 N -0.371 5.371 26 C -0.019 4.019 27 C 0.405 3.595 28 O -0.404 6.404 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.196 0.804 41 H 0.070 0.930 42 H 0.240 0.760 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.080 0.920 48 H 0.101 0.899 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.857 5.969 22.261 26.391 hybrid contribution 0.859 -0.162 0.916 1.266 sum -11.998 5.807 23.177 26.736 Atomic orbital electron populations 1.21847 0.96229 1.01034 1.01107 1.21130 0.94361 0.97108 0.98473 1.21815 1.02806 0.95094 0.99659 1.22010 0.94666 1.00846 0.98507 1.21477 0.94392 0.95502 0.85732 0.89087 1.20942 0.85721 0.98026 0.93150 1.42709 1.03018 1.77423 1.16953 1.19033 0.90847 1.33394 0.94455 0.89137 1.24648 0.96236 1.00758 0.97110 1.69701 1.08027 1.49819 1.30441 0.86618 0.79727 0.78552 0.84015 1.20982 1.21651 1.20255 1.45935 1.69439 1.13574 1.07064 1.20559 0.77578 0.89121 0.84404 1.90709 1.49413 1.15721 1.84239 1.21511 1.06645 0.93218 0.81554 1.45809 1.12468 1.48455 1.23598 1.20822 0.84273 0.79887 0.83480 1.90822 1.17944 1.50045 1.74995 1.22465 0.82848 1.01780 0.98804 1.47402 1.11416 1.53287 1.24968 1.21519 0.90599 0.94011 0.95744 1.15784 0.83603 0.78811 0.81318 1.91039 1.24910 1.64374 1.60097 0.93089 0.93234 0.93298 0.90850 0.90806 0.94162 0.94022 0.91692 0.90899 0.94855 0.94054 0.80390 0.93009 0.75960 0.85769 0.85492 0.85993 0.86098 0.91981 0.89856 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 2 C -0.09 -1.23 2.38 -90.62 -0.22 -1.44 16 3 C -0.14 -1.92 8.04 37.16 0.30 -1.62 16 4 C -0.12 -1.58 4.36 -26.73 -0.12 -1.70 16 5 C 0.13 2.06 2.33 -67.93 -0.16 1.90 16 6 H 0.09 1.61 5.92 -51.93 -0.31 1.30 16 7 C 0.15 2.73 5.82 -4.04 -0.02 2.71 16 8 N -0.75 -17.55 5.24 -59.91 -0.31 -17.86 16 9 C -0.25 -6.93 10.47 -15.06 -0.16 -7.09 16 10 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 11 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 12 N -0.93 -29.33 13.97 55.49 0.78 -28.55 16 13 Si 0.88 22.81 27.74 -169.99 -4.71 18.09 16 14 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 16 H -0.28 -7.07 6.52 56.52 0.37 -6.70 16 17 N -0.71 -10.15 4.47 -53.81 -0.24 -10.39 16 18 C 0.50 7.36 6.45 -10.99 -0.07 7.29 16 19 O -0.52 -8.92 11.39 5.55 0.06 -8.85 16 20 C 0.10 1.16 6.18 -5.20 -0.03 1.12 16 21 N -0.56 -6.87 2.09 -122.03 -0.26 -7.13 16 22 C 0.53 5.67 8.32 -10.56 -0.09 5.58 16 23 O -0.47 -6.08 17.76 5.60 0.10 -5.98 16 24 C 0.07 0.45 7.66 -4.32 -0.03 0.41 16 25 N -0.63 -5.76 3.42 -187.94 -0.64 -6.40 16 26 C 0.12 0.74 11.17 59.85 0.67 1.41 16 27 C 0.70 9.44 8.31 -88.03 -0.73 8.70 16 28 O -0.53 -9.35 17.15 5.33 0.09 -9.26 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.10 5.19 -51.93 -0.27 0.84 16 33 H 0.07 1.21 4.76 -51.93 -0.25 0.96 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.36 8.53 5.20 -40.82 -0.21 8.32 16 41 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 42 H 0.41 5.25 8.60 -40.82 -0.35 4.90 16 43 H 0.12 1.15 8.01 -51.92 -0.42 0.73 16 44 H 0.13 1.50 7.85 -51.93 -0.41 1.09 16 45 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 49 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -37.67 395.92 -7.30 -44.97 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.72 Total: 9.27 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: -0.41 Total: 16.11 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -0.68 Total: -70.32 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.25 Total: -24.09 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.71 Total: 18.09 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.67 -7.30 -44.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715387040.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.121 kcal (2) G-P(sol) polarization free energy of solvation -37.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds