Wall clock time and date at job start Sat Apr 11 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.08998 * 109.46828 * 305.00171 * 5 4 2 7 7 C 1.53002 * 109.47219 * 185.00185 * 5 4 2 8 8 N 1.46497 * 109.47089 * 185.00099 * 7 5 4 9 9 C 1.36933 * 120.00275 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99871 * 359.97438 * 9 8 7 11 11 C 1.38810 * 120.00200 * 180.02562 * 9 8 7 12 12 N 1.31621 * 119.99993 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 120.00102 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47007 * 90.00478 * 13 11 9 15 15 H 1.48503 * 109.47009 * 210.00390 * 13 11 9 16 16 H 1.48497 * 109.46930 * 330.00240 * 13 11 9 17 17 N 1.46498 * 109.46986 * 64.99835 * 5 4 2 18 18 C 1.34776 * 120.00504 * 275.00413 * 17 5 4 19 19 O 1.21286 * 119.99623 * 359.97438 * 18 17 5 20 20 C 1.50692 * 120.00329 * 180.02562 * 18 17 5 21 21 N 1.46502 * 109.47314 * 179.97438 * 20 18 17 22 22 C 1.34766 * 124.17617 * 90.02441 * 21 20 18 23 23 O 1.21232 * 127.16312 * 359.92380 * 22 21 20 24 24 C 1.51583 * 105.68207 * 179.97438 * 22 21 20 25 25 N 1.47307 * 103.59275 * 359.97438 * 24 22 21 26 26 C 1.46510 * 126.68790 * 180.02562 * 25 24 22 27 27 C 1.33787 * 124.17727 * 269.72084 * 21 20 18 28 28 O 1.21538 * 123.76830 * 0.04104 * 27 21 20 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 35 35 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 36 36 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 37 37 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 38 38 H 1.08994 * 109.47090 * 305.00012 * 7 5 4 39 39 H 1.09001 * 109.47192 * 64.99844 * 7 5 4 40 40 H 0.97008 * 119.99967 * 359.97438 * 8 7 5 41 41 H 0.96999 * 120.00047 * 179.97438 * 12 11 9 42 42 H 0.97004 * 119.99437 * 95.00257 * 17 5 4 43 43 H 1.09009 * 109.46979 * 299.99797 * 20 18 17 44 44 H 1.08996 * 109.47693 * 59.99621 * 20 18 17 45 45 H 1.09006 * 110.60276 * 118.52746 * 24 22 21 46 46 H 1.09003 * 110.59581 * 241.46570 * 24 22 21 47 47 H 1.09000 * 109.47018 * 90.00287 * 26 25 24 48 48 H 1.09001 * 109.46815 * 209.99846 * 26 25 24 49 49 H 1.09004 * 109.46733 * 329.99672 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 3.9954 0.1611 -1.0528 7 6 4.0851 -1.4393 -2.4920 8 7 5.5303 -1.6551 -2.3878 9 6 6.2200 -2.1937 -3.4410 10 1 5.6983 -2.4599 -4.3485 11 6 7.5893 -2.3986 -3.3420 12 7 8.2521 -2.9168 -4.3542 13 14 8.4914 -1.9388 -1.7721 14 1 8.5016 -3.1016 -0.8485 15 1 9.8880 -1.5536 -2.0985 16 1 7.8018 -0.7958 -1.1216 17 7 3.9479 -1.6872 -0.0628 18 6 4.0652 -1.1632 1.1734 19 8 3.8539 0.0174 1.3541 20 6 4.4598 -2.0438 2.3308 21 7 4.5182 -1.2429 3.5561 22 6 3.4740 -1.0522 4.3864 23 8 2.3513 -1.4932 4.2644 24 6 3.9948 -0.1706 5.5041 25 7 5.4044 0.0537 5.1398 26 6 6.3856 0.8463 5.8851 27 6 5.6163 -0.6151 3.9921 28 8 6.6850 -0.6434 3.4140 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 1.6053 -1.7198 -1.2953 37 1 1.7516 -0.1582 -2.1370 38 1 3.5876 -2.3922 -2.6723 39 1 3.8778 -0.7593 -3.3183 40 1 5.9989 -1.4156 -1.5728 41 1 9.2090 -3.0597 -4.2851 42 1 4.1172 -2.6314 -0.2074 43 1 3.7232 -2.8384 2.4505 44 1 5.4387 -2.4821 2.1367 45 1 3.4508 0.7736 5.5330 46 1 3.9237 -0.6846 6.4627 47 1 6.8996 0.2068 6.6027 48 1 7.1115 1.2711 5.1918 49 1 5.8756 1.6507 6.4153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715387040.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:11 Heat of formation + Delta-G solvation = -83.960483 kcal Electronic energy + Delta-G solvation = -31724.912202 eV Core-core repulsion = 27494.768800 eV Total energy + Delta-G solvation = -4230.143402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.44349 -41.16399 -39.74428 -38.23478 -37.32885 -36.61408 -36.10941 -35.12534 -33.40346 -31.70382 -30.58216 -28.50062 -27.98440 -27.35127 -27.18151 -24.37238 -23.55129 -22.96027 -21.80966 -21.16335 -20.78745 -19.85223 -18.89773 -18.60604 -17.83735 -17.69974 -17.11753 -17.06850 -16.60987 -16.32537 -15.92741 -15.87832 -15.51045 -15.41344 -15.07954 -14.99519 -14.87402 -14.74225 -14.48476 -14.45016 -13.97471 -13.54117 -13.45570 -13.37135 -13.28380 -13.10585 -13.04422 -12.92704 -12.57624 -12.44330 -12.16560 -12.09968 -11.88244 -11.76007 -11.56304 -11.42974 -11.39421 -11.29669 -11.04896 -10.61392 -10.01970 -9.99880 -9.33931 -8.06648 -5.38870 0.57480 0.89322 1.31912 1.36743 1.40259 1.50365 1.75366 1.99754 2.29288 2.41773 2.99743 3.25833 3.42700 3.62319 3.67126 3.85118 4.03413 4.07005 4.09066 4.13660 4.21982 4.27093 4.31627 4.33908 4.36103 4.59667 4.64673 4.78167 4.84278 4.85797 4.86021 4.88802 4.93851 4.96900 5.05422 5.12995 5.18481 5.35687 5.36349 5.52560 5.53372 5.60626 5.73898 5.99517 6.17748 6.27175 6.48044 6.92921 7.03789 7.15632 7.79922 7.97088 9.14820 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009220 B = 0.004484 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.076962 B = 6242.732054 C = 8574.925803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.130 4.130 4 C -0.113 4.113 5 C 0.145 3.855 6 H 0.068 0.932 7 C 0.148 3.852 8 N -0.757 5.757 9 C -0.228 4.228 10 H 0.067 0.933 11 C -0.051 4.051 12 N -0.978 5.978 13 Si 0.943 3.057 14 H -0.272 1.272 15 H -0.297 1.297 16 H -0.274 1.274 17 N -0.707 5.707 18 C 0.495 3.505 19 O -0.549 6.549 20 C 0.094 3.906 21 N -0.564 5.564 22 C 0.522 3.478 23 O -0.495 6.495 24 C 0.076 3.924 25 N -0.622 5.622 26 C 0.115 3.885 27 C 0.691 3.309 28 O -0.587 6.587 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.041 0.959 40 H 0.363 0.637 41 H 0.258 0.742 42 H 0.413 0.587 43 H 0.152 0.848 44 H 0.126 0.874 45 H 0.149 0.851 46 H 0.164 0.836 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.750 5.907 25.512 30.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 C -0.188 4.188 4 C -0.152 4.152 5 C 0.040 3.960 6 H 0.087 0.913 7 C 0.022 3.978 8 N -0.403 5.403 9 C -0.359 4.359 10 H 0.085 0.915 11 C -0.244 4.244 12 N -0.629 5.629 13 Si 0.772 3.228 14 H -0.198 1.198 15 H -0.224 1.224 16 H -0.200 1.200 17 N -0.359 5.359 18 C 0.280 3.720 19 O -0.427 6.427 20 C -0.031 4.031 21 N -0.309 5.309 22 C 0.312 3.688 23 O -0.366 6.366 24 C -0.048 4.048 25 N -0.360 5.360 26 C -0.024 4.024 27 C 0.393 3.607 28 O -0.464 6.464 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.196 0.804 41 H 0.067 0.933 42 H 0.249 0.751 43 H 0.169 0.831 44 H 0.144 0.856 45 H 0.167 0.833 46 H 0.181 0.819 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.842 6.473 25.092 29.862 hybrid contribution 1.352 -0.266 0.047 1.378 sum -13.490 6.207 25.138 29.197 Atomic orbital electron populations 1.21789 0.94463 1.01773 1.01659 1.21053 0.95716 0.96192 0.97689 1.21732 1.01061 0.95947 1.00012 1.21952 0.92479 1.01874 0.98878 1.21238 0.95933 0.94168 0.84641 0.91344 1.21113 0.82983 0.98830 0.94880 1.42728 1.04964 1.76946 1.15646 1.19057 0.90897 1.31450 0.94536 0.91540 1.25282 0.97254 1.01918 0.99901 1.69842 1.08189 1.52247 1.32632 0.85616 0.77972 0.78519 0.80703 1.19814 1.22360 1.20016 1.45901 1.69420 1.13787 1.06829 1.21022 0.76910 0.89146 0.84924 1.90697 1.50474 1.16893 1.84659 1.21580 1.07314 0.93302 0.80900 1.45952 1.12884 1.48368 1.23677 1.21502 0.83565 0.79784 0.83972 1.90809 1.18752 1.51272 1.75768 1.22762 0.81018 1.02481 0.98566 1.47664 1.12914 1.51902 1.23539 1.21802 0.90363 0.95011 0.95265 1.16120 0.83092 0.79198 0.82285 1.90988 1.26860 1.66541 1.61983 0.92069 0.92407 0.93240 0.92524 0.93376 0.93119 0.94266 0.90237 0.89952 0.93369 0.94055 0.80442 0.93287 0.75116 0.83072 0.85563 0.83316 0.81868 0.90299 0.92062 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.19 71.98 0.66 -2.22 16 2 C -0.09 -2.21 2.38 -10.79 -0.03 -2.24 16 3 C -0.13 -3.57 8.04 71.98 0.58 -2.99 16 4 C -0.11 -2.74 4.36 30.59 0.13 -2.61 16 5 C 0.15 4.37 2.33 44.99 0.10 4.47 16 6 H 0.07 2.42 5.92 -2.39 -0.01 2.41 16 7 C 0.15 5.29 5.82 86.38 0.50 5.79 16 8 N -0.76 -34.89 5.24 -343.46 -1.80 -36.69 16 9 C -0.23 -12.88 10.47 84.03 0.88 -12.00 16 10 H 0.07 4.03 8.06 -2.91 -0.02 4.01 16 11 C -0.05 -3.05 5.50 84.86 0.47 -2.59 16 12 N -0.98 -62.77 13.97 21.65 0.30 -62.47 16 13 Si 0.94 47.90 27.74 68.60 1.90 49.80 16 14 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 15 H -0.30 -15.31 7.11 99.48 0.71 -14.61 16 16 H -0.27 -13.65 6.52 99.48 0.65 -13.01 16 17 N -0.71 -19.72 4.47 -442.54 -1.98 -21.70 16 18 C 0.49 14.42 6.45 87.65 0.57 14.99 16 19 O -0.55 -18.73 11.39 -3.05 -0.03 -18.76 16 20 C 0.09 2.22 6.18 85.63 0.53 2.75 16 21 N -0.56 -13.39 2.09 -777.23 -1.63 -15.02 16 22 C 0.52 10.22 8.32 87.94 0.73 10.96 16 23 O -0.49 -12.01 17.76 -2.88 -0.05 -12.06 16 24 C 0.08 0.74 7.66 85.76 0.66 1.40 16 25 N -0.62 -9.97 3.42 -866.94 -2.96 -12.93 16 26 C 0.11 1.12 11.17 127.77 1.43 2.54 16 27 C 0.69 18.16 8.31 179.44 1.49 19.65 16 28 O -0.59 -21.04 17.15 -3.83 -0.07 -21.10 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.64 5.19 -2.39 -0.01 1.63 16 33 H 0.05 1.58 4.76 -2.39 -0.01 1.57 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.36 16.85 5.20 -92.70 -0.48 16.37 16 41 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.41 10.23 8.60 -92.71 -0.80 9.44 16 43 H 0.15 2.61 8.01 -2.38 -0.02 2.59 16 44 H 0.13 2.97 7.85 -2.39 -0.02 2.96 16 45 H 0.15 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.16 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.06 0.90 8.03 -2.39 -0.02 0.88 16 49 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -84.28 395.92 2.03 -82.25 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -0.36 Total: 30.77 kcal Atomic # 6 Polarization: 29.21 SS G_CDS: 8.70 Total: 37.91 kcal Atomic # 7 Polarization: -140.74 SS G_CDS: -8.06 Total: -148.81 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -0.15 Total: -51.92 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.90 Total: 49.80 kcal Total: -84.28 2.03 -82.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715387040.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.712 kcal (2) G-P(sol) polarization free energy of solvation -84.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds