Wall clock time and date at job start Sat Apr 11 2020 06:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47322 * 2 1 4 4 H 1.09001 * 109.46848 * 54.34777 * 3 2 1 5 5 C 1.52998 * 109.47004 * 294.34734 * 3 2 1 6 6 N 1.46506 * 109.46563 * 184.99486 * 5 3 2 7 7 C 1.34778 * 119.99441 * 179.97438 * 6 5 3 8 8 O 1.21287 * 120.00370 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00045 * 180.02562 * 7 6 5 10 10 C 1.53003 * 110.43213 * 298.91543 * 9 7 6 11 11 C 1.54622 * 110.48907 * 176.22818 * 9 7 6 12 12 C 1.54477 * 101.76939 * 266.12125 * 11 9 7 13 13 N 1.46768 * 105.46945 * 334.58802 * 12 11 9 14 14 C 1.34409 * 111.30472 * 17.01252 * 13 12 11 15 15 O 1.21288 * 124.94551 * 179.61897 * 14 13 12 16 16 N 1.46897 * 109.47037 * 174.34553 * 3 2 1 17 17 C 1.46905 * 111.00134 * 272.72249 * 16 3 2 18 18 C 1.50700 * 109.46921 * 182.68320 * 17 16 3 19 19 O 1.21291 * 120.00281 * 359.97438 * 18 17 16 20 20 N 1.34780 * 120.00003 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00446 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99727 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00297 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99614 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99907 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46872 * 60.00573 * 25 23 21 27 27 H 1.48504 * 109.46881 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47430 * 300.00468 * 25 23 21 29 29 H 1.09000 * 109.47238 * 182.68467 * 1 2 3 30 30 H 1.08999 * 109.47143 * 302.68251 * 1 2 3 31 31 H 1.08995 * 109.47567 * 62.68387 * 1 2 3 32 32 H 1.09006 * 109.47370 * 240.00152 * 2 1 3 33 33 H 1.09003 * 109.47510 * 120.00418 * 2 1 3 34 34 H 1.08999 * 109.47024 * 65.00174 * 5 3 2 35 35 H 1.08996 * 109.47183 * 304.99551 * 5 3 2 36 36 H 0.96997 * 120.00368 * 0.02562 * 6 5 3 37 37 H 1.08996 * 109.46686 * 181.08140 * 10 9 7 38 38 H 1.08991 * 109.46999 * 301.08666 * 10 9 7 39 39 H 1.08998 * 109.46852 * 61.08752 * 10 9 7 40 40 H 1.09000 * 110.96845 * 24.24113 * 11 9 7 41 41 H 1.08996 * 110.97318 * 147.96262 * 11 9 7 42 42 H 1.09000 * 110.25023 * 215.58521 * 12 11 9 43 43 H 1.09005 * 110.24400 * 93.57834 * 12 11 9 44 44 H 0.97005 * 124.34597 * 197.28506 * 13 12 11 45 45 H 1.00894 * 111.00559 * 36.67812 * 16 3 2 46 46 H 1.08995 * 109.47097 * 302.67960 * 17 16 3 47 47 H 1.08995 * 109.46876 * 62.68700 * 17 16 3 48 48 H 0.97001 * 119.99310 * 359.97438 * 20 18 17 49 49 H 0.97001 * 119.99632 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9847 0.8351 5 6 1.6493 2.1215 -1.3142 6 7 2.2387 3.4618 -1.3653 7 6 2.0281 4.2501 -2.4380 8 8 1.3503 3.8501 -3.3609 9 6 2.6348 5.6286 -2.4910 10 6 2.1108 6.4874 -1.3383 11 6 2.3338 6.3005 -3.8506 12 6 3.5949 5.9395 -4.6665 13 7 4.6556 5.7275 -3.6745 14 6 4.1447 5.5445 -2.4448 15 8 4.7989 5.3421 -1.4438 16 7 3.5026 1.4447 0.1365 17 6 3.8994 1.4253 1.5508 18 6 5.4014 1.4946 1.6520 19 8 6.0751 1.5538 0.6451 20 7 5.9963 1.4899 2.8614 21 6 7.3627 1.5524 2.9535 22 1 7.9625 1.6051 2.0569 23 6 7.9759 1.5480 4.2004 24 7 7.2461 1.4834 5.2913 25 14 9.8378 1.6324 4.3259 26 1 10.3201 2.8865 3.6933 27 1 10.2389 1.6138 5.7556 28 1 10.4344 0.4651 3.6285 29 1 -0.3634 -1.0265 0.0481 30 1 -0.3633 0.5549 0.8650 31 1 -0.3634 0.4716 -0.9130 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.5638 2.1995 -1.3742 35 1 2.0180 1.5302 -2.1523 36 1 2.7811 3.7816 -0.6274 37 1 2.5442 7.4854 -1.4026 38 1 1.0250 6.5579 -1.4022 39 1 2.3900 6.0306 -0.3888 40 1 1.4395 5.8755 -4.3063 41 1 2.2367 7.3804 -3.7391 42 1 3.8605 6.7598 -5.3333 43 1 3.4257 5.0271 -5.2385 44 1 5.6037 5.7240 -3.8793 45 1 3.9138 0.6717 -0.3650 46 1 3.4609 2.2817 2.0629 47 1 3.5462 0.5045 2.0146 48 1 5.4575 1.4422 3.6666 49 1 7.6742 1.4799 6.1617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267821071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:41 Heat of formation + Delta-G solvation = -114.759716 kcal Electronic energy + Delta-G solvation = -30716.220882 eV Core-core repulsion = 26484.741925 eV Total energy + Delta-G solvation = -4231.478957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.26621 -39.08446 -38.35038 -37.24291 -36.32890 -34.17048 -33.85218 -33.18770 -32.45495 -31.13871 -29.13206 -28.28237 -26.28077 -25.53417 -24.31368 -23.34677 -22.39313 -21.61078 -20.84583 -19.38690 -19.13464 -17.86573 -17.61746 -17.33832 -16.49567 -15.91470 -15.64199 -15.44039 -15.08780 -14.93487 -14.53343 -14.45197 -14.24705 -14.00835 -13.83651 -13.75256 -13.46798 -13.33390 -13.12224 -12.95694 -12.71718 -12.52056 -12.37591 -12.14847 -12.07652 -11.73211 -11.59657 -11.46549 -11.39750 -11.38101 -11.19950 -10.97874 -10.74640 -10.40276 -10.16153 -10.06241 -9.70665 -9.44333 -9.22339 -8.97599 -8.44191 -8.02618 -7.90133 -6.36656 -3.76817 2.27073 2.65453 3.14759 3.23994 3.28785 3.30622 3.33919 3.96941 4.01564 4.08491 4.18286 4.32083 4.47029 4.69941 4.71914 4.79875 4.88801 5.04682 5.07176 5.18108 5.23422 5.26348 5.31495 5.34479 5.40895 5.45871 5.58145 5.61668 5.65132 5.75661 5.78022 5.80995 5.87651 5.89670 5.92136 6.05041 6.10940 6.32088 6.48282 6.62444 6.87972 7.17820 7.56978 7.60233 7.61945 8.11661 8.13420 8.19962 8.67364 9.23734 9.60115 10.12410 10.81254 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010056 B = 0.003165 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.635226 B = 8845.965946 C =10943.072726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.152 4.152 3 C 0.071 3.929 4 H 0.084 0.916 5 C 0.133 3.867 6 N -0.700 5.700 7 C 0.534 3.466 8 O -0.545 6.545 9 C -0.119 4.119 10 C -0.129 4.129 11 C -0.117 4.117 12 C 0.101 3.899 13 N -0.731 5.731 14 C 0.525 3.475 15 O -0.496 6.496 16 N -0.661 5.661 17 C 0.051 3.949 18 C 0.442 3.558 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.904 5.904 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.416 0.584 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.414 0.586 45 H 0.352 0.648 46 H 0.085 0.915 47 H 0.044 0.956 48 H 0.391 0.609 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.132 7.042 -14.475 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.191 4.191 3 C -0.040 4.040 4 H 0.102 0.898 5 C 0.009 3.991 6 N -0.351 5.351 7 C 0.318 3.682 8 O -0.423 6.423 9 C -0.126 4.126 10 C -0.186 4.186 11 C -0.155 4.155 12 C -0.024 4.024 13 N -0.388 5.388 14 C 0.308 3.692 15 O -0.368 6.368 16 N -0.293 5.293 17 C -0.082 4.082 18 C 0.227 3.773 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.426 4.426 22 H 0.119 0.881 23 C -0.179 4.179 24 N -0.546 5.546 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.253 0.747 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.253 0.747 45 H 0.172 0.828 46 H 0.103 0.897 47 H 0.062 0.938 48 H 0.224 0.776 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.776 7.343 -15.062 23.014 hybrid contribution 1.131 -0.819 1.121 1.790 sum -14.645 6.524 -13.941 21.246 Atomic orbital electron populations 1.21775 0.95292 1.01790 1.02023 1.22222 0.96854 0.97190 1.02853 1.21933 0.89352 0.95179 0.97493 0.89761 1.21413 0.97315 0.82695 0.97685 1.45819 1.52303 1.15598 1.21364 1.19642 0.80626 0.85560 0.82408 1.90661 1.40302 1.74450 1.36879 1.21608 0.95183 0.95851 0.99982 1.21674 1.01499 0.99231 0.96236 1.22686 0.99407 1.01017 0.92376 1.22089 0.86926 1.01887 0.91495 1.46123 1.09826 1.74170 1.08687 1.20306 0.89139 0.76192 0.83549 1.90912 1.65546 1.46831 1.33523 1.60110 1.05715 1.52084 1.11366 1.21716 0.96058 1.00936 0.89447 1.19787 0.88558 0.84455 0.84501 1.90545 1.65139 1.54779 1.35631 1.41834 1.07597 1.64540 1.06241 1.19646 0.81807 1.47217 0.93970 0.88053 1.25235 1.00463 0.97459 0.94790 1.69605 1.36198 1.50827 0.97925 0.85934 0.82386 0.79080 0.76920 1.19889 1.21012 1.19975 0.92723 0.92565 0.92356 0.91338 0.91268 0.91048 0.91580 0.74653 0.91011 0.90985 0.90762 0.87389 0.89296 0.90029 0.90704 0.74719 0.82813 0.89676 0.93788 0.77563 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.62 37.15 0.36 -0.90 16 2 C -0.15 -1.52 5.38 -26.73 -0.14 -1.66 16 3 C 0.07 0.83 2.22 -67.72 -0.15 0.68 16 4 H 0.08 0.93 7.72 -51.93 -0.40 0.53 16 5 C 0.13 1.60 5.01 -4.04 -0.02 1.58 16 6 N -0.70 -9.41 5.25 -60.29 -0.32 -9.72 16 7 C 0.53 7.17 6.55 -10.98 -0.07 7.10 16 8 O -0.54 -8.21 15.46 5.55 0.09 -8.13 16 9 C -0.12 -1.35 0.74 -155.67 -0.12 -1.46 16 10 C -0.13 -1.22 8.33 37.16 0.31 -0.91 16 11 C -0.12 -0.96 6.05 -25.10 -0.15 -1.11 16 12 C 0.10 0.80 7.78 -3.12 -0.02 0.77 16 13 N -0.73 -7.92 6.24 -59.20 -0.37 -8.29 16 14 C 0.53 7.39 7.08 -10.86 -0.08 7.32 16 15 O -0.50 -9.34 17.69 5.55 0.10 -9.25 16 16 N -0.66 -10.37 5.28 -107.99 -0.57 -10.94 16 17 C 0.05 0.89 5.98 -4.97 -0.03 0.86 16 18 C 0.44 10.60 7.83 -10.98 -0.09 10.52 16 19 O -0.58 -16.14 15.84 5.55 0.09 -16.05 16 20 N -0.57 -14.59 5.29 -10.96 -0.06 -14.64 16 21 C -0.30 -8.48 9.68 -14.94 -0.14 -8.63 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.99 13.05 55.50 0.72 -24.27 16 25 Si 0.93 21.58 29.55 -169.99 -5.02 16.56 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.47 6.83 -51.93 -0.35 0.11 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.73 7.55 -51.93 -0.39 0.34 16 34 H 0.07 0.77 6.89 -51.93 -0.36 0.42 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.42 6.13 7.51 -40.82 -0.31 5.82 16 37 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.80 7.75 -51.93 -0.40 0.39 16 40 H 0.11 0.93 6.91 -51.93 -0.36 0.57 16 41 H 0.09 0.53 7.91 -51.93 -0.41 0.12 16 42 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.41 4.01 8.96 -40.82 -0.37 3.65 16 45 H 0.35 5.85 8.25 -39.29 -0.32 5.52 16 46 H 0.09 1.36 7.99 -51.93 -0.41 0.95 16 47 H 0.04 0.68 7.57 -51.93 -0.39 0.29 16 48 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 49 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -35.76 403.03 -7.41 -43.17 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -7.70 Total: 20.84 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: -0.44 Total: 14.65 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -0.59 Total: -67.87 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: 0.27 Total: -33.42 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.76 -7.41 -43.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267821071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.589 kcal (2) G-P(sol) polarization free energy of solvation -35.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds