Wall clock time and date at job start Sat Apr 11 2020 06:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 H 1.09006 * 109.46871 * 303.21904 * 3 2 1 5 5 C 1.53006 * 109.47176 * 183.22164 * 3 2 1 6 6 N 1.46503 * 109.47173 * 184.99655 * 5 3 2 7 7 C 1.34777 * 119.99897 * 179.97438 * 6 5 3 8 8 O 1.21276 * 119.99910 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99593 * 180.27525 * 7 6 5 10 10 C 1.52998 * 110.43372 * 59.02653 * 9 7 6 11 11 C 1.54631 * 110.48385 * 181.56576 * 9 7 6 12 12 C 1.54830 * 101.60556 * 93.91939 * 11 9 7 13 13 N 1.46760 * 105.49097 * 25.43341 * 12 11 9 14 14 C 1.34423 * 111.30354 * 342.96271 * 13 12 11 15 15 O 1.21279 * 124.93953 * 180.37255 * 14 13 12 16 16 N 1.46895 * 109.47632 * 63.21887 * 3 2 1 17 17 C 1.46910 * 110.99842 * 58.68627 * 16 3 2 18 18 C 1.50700 * 109.46998 * 174.48987 * 17 16 3 19 19 O 1.21295 * 120.00316 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99735 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99788 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00206 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99909 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00031 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00110 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47038 * 90.00476 * 25 23 21 27 27 H 1.48504 * 109.47674 * 209.99920 * 25 23 21 28 28 H 1.48497 * 109.47582 * 330.00294 * 25 23 21 29 29 H 1.09005 * 109.47162 * 293.94886 * 1 2 3 30 30 H 1.08997 * 109.47514 * 53.94639 * 1 2 3 31 31 H 1.09000 * 109.47328 * 173.95469 * 1 2 3 32 32 H 1.09001 * 109.47174 * 239.99978 * 2 1 3 33 33 H 1.09000 * 109.47487 * 119.99299 * 2 1 3 34 34 H 1.08999 * 109.46681 * 64.99750 * 5 3 2 35 35 H 1.08999 * 109.47111 * 304.99665 * 5 3 2 36 36 H 0.97006 * 119.99740 * 359.97438 * 6 5 3 37 37 H 1.09006 * 109.47391 * 60.69885 * 10 9 7 38 38 H 1.09010 * 109.47070 * 180.69701 * 10 9 7 39 39 H 1.08993 * 109.47330 * 300.69456 * 10 9 7 40 40 H 1.08996 * 110.97193 * 212.00304 * 11 9 7 41 41 H 1.09007 * 110.96625 * 335.75977 * 11 9 7 42 42 H 1.08994 * 110.25221 * 266.41767 * 12 11 9 43 43 H 1.08997 * 110.21545 * 144.42924 * 12 11 9 44 44 H 0.97007 * 124.34943 * 162.94551 * 13 12 11 45 45 H 1.00903 * 111.00409 * 294.73875 * 16 3 2 46 46 H 1.08996 * 109.47039 * 294.49163 * 17 16 3 47 47 H 1.09003 * 109.46632 * 54.49227 * 17 16 3 48 48 H 0.97002 * 119.99874 * 0.02562 * 20 18 17 49 49 H 0.96998 * 119.99961 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6301 1.9727 -0.8598 5 6 3.5678 1.4433 -0.0811 6 7 4.0625 2.8171 0.0389 7 6 5.3870 3.0626 -0.0047 8 8 6.1692 2.1464 -0.1439 9 6 5.8960 4.4751 0.1249 10 6 5.4485 5.0842 1.4552 11 6 7.4374 4.5078 0.0061 12 6 7.6274 4.7977 -1.5029 13 7 6.4041 5.4893 -1.9262 14 6 5.4137 5.3202 -1.0332 15 8 4.2962 5.7791 -1.1403 16 7 1.6148 2.1123 1.2363 17 6 2.1237 1.4057 2.4196 18 6 1.7841 2.1926 3.6592 19 8 1.1774 3.2387 3.5662 20 7 2.1546 1.7338 4.8711 21 6 1.8453 2.4493 5.9988 22 1 1.3050 3.3808 5.9161 23 6 2.2267 1.9761 7.2483 24 7 2.8845 0.8429 7.3490 25 14 1.8058 2.9513 8.7849 26 1 0.4824 2.5170 9.2998 27 1 2.8424 2.7139 9.8215 28 1 1.7580 4.3985 8.4551 29 1 -0.3634 0.4172 0.9392 30 1 -0.3634 0.6048 -0.8308 31 1 -0.3634 -1.0219 -0.1082 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.8810 1.0267 -1.0384 35 1 3.9750 0.8385 0.7291 36 1 3.4367 3.5500 0.1498 37 1 5.8527 4.4954 2.2787 38 1 5.8143 6.1085 1.5271 39 1 4.3598 5.0827 1.5075 40 1 7.8587 5.3084 0.6140 41 1 7.8701 3.5448 0.2778 42 1 7.7436 3.8650 -2.0546 43 1 8.4955 5.4386 -1.6569 44 1 6.3210 6.0026 -2.7451 45 1 0.6103 2.2011 1.2726 46 1 1.6650 0.4188 2.4786 47 1 3.2058 1.2995 2.3417 48 1 2.6402 0.8973 4.9454 49 1 3.1512 0.5127 8.2212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267821073.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:45 Heat of formation + Delta-G solvation = -112.505578 kcal Electronic energy + Delta-G solvation = -31055.690166 eV Core-core repulsion = 26824.308956 eV Total energy + Delta-G solvation = -4231.381210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -41.32054 -39.26700 -38.44764 -37.29292 -36.45753 -34.19680 -33.87675 -33.20860 -31.75649 -31.14271 -29.25320 -28.42275 -26.59097 -25.59655 -24.30667 -23.72463 -22.23348 -21.57796 -20.43627 -19.41313 -18.94831 -17.91185 -17.67250 -17.42421 -16.81237 -15.98959 -15.69888 -15.42247 -15.20470 -14.91973 -14.63900 -14.27602 -14.21953 -14.04402 -13.87092 -13.80697 -13.73265 -13.44276 -13.19723 -12.82173 -12.57985 -12.39960 -12.28942 -12.25783 -11.89977 -11.76070 -11.63340 -11.48937 -11.33099 -11.27100 -11.06658 -10.86366 -10.76870 -10.38272 -10.19863 -10.12837 -9.75268 -9.48637 -9.38478 -8.97660 -8.47877 -8.04634 -7.93676 -6.39743 -3.80420 2.19334 2.56831 3.03119 3.18782 3.27405 3.28630 3.33481 3.93469 4.01159 4.11041 4.16780 4.34392 4.51330 4.63292 4.74045 4.81905 4.92938 4.99948 5.10179 5.17811 5.24110 5.26858 5.30023 5.43397 5.56353 5.60264 5.60736 5.63091 5.71315 5.75748 5.83131 5.83594 5.88016 5.98616 6.10300 6.15757 6.20780 6.28686 6.46136 6.48972 6.68564 7.17297 7.56918 7.57278 7.62040 7.96588 8.08373 8.20794 8.63653 9.20198 9.56883 10.08579 10.78018 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.003363 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.873395 B = 8324.245893 C =10072.185337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.159 4.159 3 C 0.073 3.927 4 H 0.090 0.910 5 C 0.126 3.874 6 N -0.702 5.702 7 C 0.534 3.466 8 O -0.541 6.541 9 C -0.118 4.118 10 C -0.131 4.131 11 C -0.118 4.118 12 C 0.100 3.900 13 N -0.730 5.730 14 C 0.532 3.468 15 O -0.514 6.514 16 N -0.658 5.658 17 C 0.044 3.956 18 C 0.442 3.558 19 O -0.581 6.581 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.418 0.582 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.412 0.588 45 H 0.353 0.647 46 H 0.047 0.953 47 H 0.086 0.914 48 H 0.391 0.609 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.055 1.742 -18.597 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.199 4.199 3 C -0.038 4.038 4 H 0.108 0.892 5 C 0.002 3.998 6 N -0.353 5.353 7 C 0.318 3.682 8 O -0.419 6.419 9 C -0.125 4.125 10 C -0.189 4.189 11 C -0.156 4.156 12 C -0.024 4.024 13 N -0.386 5.386 14 C 0.316 3.684 15 O -0.388 6.388 16 N -0.290 5.290 17 C -0.089 4.089 18 C 0.228 3.772 19 O -0.465 6.465 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.255 0.745 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.250 0.750 45 H 0.174 0.826 46 H 0.065 0.935 47 H 0.104 0.896 48 H 0.224 0.776 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.168 2.338 -18.537 20.391 hybrid contribution -0.653 -0.442 0.609 0.996 sum 7.515 1.896 -17.927 19.531 Atomic orbital electron populations 1.21756 0.95229 1.01907 1.02173 1.22202 0.96814 0.97888 1.02998 1.21931 0.94005 0.93427 0.94418 0.89211 1.21450 0.93147 0.83417 1.01820 1.45812 1.06874 1.10440 1.72181 1.19643 0.82773 0.89227 0.76560 1.90670 1.55771 1.45356 1.50142 1.21616 0.98504 0.94328 0.98004 1.21715 1.03677 1.00862 0.92627 1.22778 0.92137 1.05345 0.95325 1.22189 0.87003 0.97495 0.95738 1.46157 1.13637 1.54164 1.24651 1.20369 0.84463 0.79838 0.83737 1.90792 1.19721 1.50901 1.77431 1.60179 1.18499 1.50874 0.99493 1.21767 1.01089 0.95480 0.90553 1.19802 0.85354 0.87913 0.84158 1.90529 1.44926 1.24710 1.86290 1.41861 1.50581 1.22970 1.04741 1.19687 1.34019 1.05708 0.83354 0.87963 1.25244 0.96882 0.96511 0.99286 1.69613 1.38990 1.20104 1.25634 0.85881 0.77983 0.79926 0.80641 1.20476 1.20952 1.19405 0.92401 0.92495 0.92501 0.91382 0.91019 0.91318 0.91111 0.74460 0.90539 0.91188 0.90179 0.89094 0.87187 0.90559 0.89921 0.74960 0.82628 0.93489 0.89603 0.77574 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.49 37.15 0.35 -1.16 16 2 C -0.16 -1.62 5.12 -26.73 -0.14 -1.76 16 3 C 0.07 0.85 2.72 -67.71 -0.18 0.66 16 4 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 5 C 0.13 1.58 4.71 -4.04 -0.02 1.56 16 6 N -0.70 -9.70 5.25 -60.29 -0.32 -10.02 16 7 C 0.53 7.55 6.55 -10.99 -0.07 7.48 16 8 O -0.54 -8.63 15.46 5.56 0.09 -8.54 16 9 C -0.12 -1.41 0.74 -155.68 -0.12 -1.53 16 10 C -0.13 -1.64 8.31 37.16 0.31 -1.33 16 11 C -0.12 -1.05 6.06 -24.91 -0.15 -1.20 16 12 C 0.10 0.72 7.79 -2.94 -0.02 0.70 16 13 N -0.73 -6.51 6.24 -59.02 -0.37 -6.88 16 14 C 0.53 6.64 7.13 -10.86 -0.08 6.56 16 15 O -0.51 -8.12 17.84 5.56 0.10 -8.02 16 16 N -0.66 -9.82 5.34 -107.98 -0.58 -10.39 16 17 C 0.04 0.74 5.33 -4.97 -0.03 0.72 16 18 C 0.44 10.24 7.83 -10.98 -0.09 10.15 16 19 O -0.58 -15.42 15.90 5.54 0.09 -15.33 16 20 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 21 C -0.30 -8.28 9.68 -14.94 -0.14 -8.42 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 25 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.06 0.65 7.17 -51.93 -0.37 0.28 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.79 6.33 -51.93 -0.33 0.46 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.96 6.58 -51.93 -0.34 0.62 16 36 H 0.42 6.16 7.55 -40.82 -0.31 5.86 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 39 H 0.08 1.17 7.58 -51.93 -0.39 0.77 16 40 H 0.09 0.65 7.91 -51.93 -0.41 0.24 16 41 H 0.11 1.08 6.94 -51.93 -0.36 0.72 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.41 2.86 8.96 -40.82 -0.37 2.49 16 45 H 0.35 5.42 7.34 -39.29 -0.29 5.13 16 46 H 0.05 0.73 6.52 -51.93 -0.34 0.40 16 47 H 0.09 1.44 6.17 -51.93 -0.32 1.12 16 48 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 49 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -33.69 397.91 -7.29 -40.98 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: -7.47 Total: 21.32 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -0.47 Total: 12.93 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: -0.59 Total: -65.38 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: 0.27 Total: -31.89 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.69 -7.29 -40.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267821073.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.528 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds