Wall clock time and date at job start Sat Apr 11 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 H 1.09006 * 109.46871 * 303.21904 * 3 2 1 5 5 C 1.53006 * 109.47176 * 183.22164 * 3 2 1 6 6 N 1.46503 * 109.47173 * 184.99655 * 5 3 2 7 7 C 1.34777 * 119.99897 * 179.97438 * 6 5 3 8 8 O 1.21276 * 119.99910 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99593 * 180.27525 * 7 6 5 10 10 C 1.52998 * 110.43372 * 59.02653 * 9 7 6 11 11 C 1.54631 * 110.48385 * 181.56576 * 9 7 6 12 12 C 1.54830 * 101.60556 * 93.91939 * 11 9 7 13 13 N 1.46760 * 105.49097 * 25.43341 * 12 11 9 14 14 C 1.34423 * 111.30354 * 342.96271 * 13 12 11 15 15 O 1.21279 * 124.93953 * 180.37255 * 14 13 12 16 16 N 1.46895 * 109.47632 * 63.21887 * 3 2 1 17 17 C 1.46910 * 110.99842 * 58.68627 * 16 3 2 18 18 C 1.50700 * 109.46998 * 174.48987 * 17 16 3 19 19 O 1.21295 * 120.00316 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99735 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99788 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00206 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99909 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00031 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00110 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47038 * 90.00476 * 25 23 21 27 27 H 1.48504 * 109.47674 * 209.99920 * 25 23 21 28 28 H 1.48497 * 109.47582 * 330.00294 * 25 23 21 29 29 H 1.09005 * 109.47162 * 293.94886 * 1 2 3 30 30 H 1.08997 * 109.47514 * 53.94639 * 1 2 3 31 31 H 1.09000 * 109.47328 * 173.95469 * 1 2 3 32 32 H 1.09001 * 109.47174 * 239.99978 * 2 1 3 33 33 H 1.09000 * 109.47487 * 119.99299 * 2 1 3 34 34 H 1.08999 * 109.46681 * 64.99750 * 5 3 2 35 35 H 1.08999 * 109.47111 * 304.99665 * 5 3 2 36 36 H 0.97006 * 119.99740 * 359.97438 * 6 5 3 37 37 H 1.09006 * 109.47391 * 60.69885 * 10 9 7 38 38 H 1.09010 * 109.47070 * 180.69701 * 10 9 7 39 39 H 1.08993 * 109.47330 * 300.69456 * 10 9 7 40 40 H 1.08996 * 110.97193 * 212.00304 * 11 9 7 41 41 H 1.09007 * 110.96625 * 335.75977 * 11 9 7 42 42 H 1.08994 * 110.25221 * 266.41767 * 12 11 9 43 43 H 1.08997 * 110.21545 * 144.42924 * 12 11 9 44 44 H 0.97007 * 124.34943 * 162.94551 * 13 12 11 45 45 H 1.00903 * 111.00409 * 294.73875 * 16 3 2 46 46 H 1.08996 * 109.47039 * 294.49163 * 17 16 3 47 47 H 1.09003 * 109.46632 * 54.49227 * 17 16 3 48 48 H 0.97002 * 119.99874 * 0.02562 * 20 18 17 49 49 H 0.96998 * 119.99961 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6301 1.9727 -0.8598 5 6 3.5678 1.4433 -0.0811 6 7 4.0625 2.8171 0.0389 7 6 5.3870 3.0626 -0.0047 8 8 6.1692 2.1464 -0.1439 9 6 5.8960 4.4751 0.1249 10 6 5.4485 5.0842 1.4552 11 6 7.4374 4.5078 0.0061 12 6 7.6274 4.7977 -1.5029 13 7 6.4041 5.4893 -1.9262 14 6 5.4137 5.3202 -1.0332 15 8 4.2962 5.7791 -1.1403 16 7 1.6148 2.1123 1.2363 17 6 2.1237 1.4057 2.4196 18 6 1.7841 2.1926 3.6592 19 8 1.1774 3.2387 3.5662 20 7 2.1546 1.7338 4.8711 21 6 1.8453 2.4493 5.9988 22 1 1.3050 3.3808 5.9161 23 6 2.2267 1.9761 7.2483 24 7 2.8845 0.8429 7.3490 25 14 1.8058 2.9513 8.7849 26 1 0.4824 2.5170 9.2998 27 1 2.8424 2.7139 9.8215 28 1 1.7580 4.3985 8.4551 29 1 -0.3634 0.4172 0.9392 30 1 -0.3634 0.6048 -0.8308 31 1 -0.3634 -1.0219 -0.1082 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.8810 1.0267 -1.0384 35 1 3.9750 0.8385 0.7291 36 1 3.4367 3.5500 0.1498 37 1 5.8527 4.4954 2.2787 38 1 5.8143 6.1085 1.5271 39 1 4.3598 5.0827 1.5075 40 1 7.8587 5.3084 0.6140 41 1 7.8701 3.5448 0.2778 42 1 7.7436 3.8650 -2.0546 43 1 8.4955 5.4386 -1.6569 44 1 6.3210 6.0026 -2.7451 45 1 0.6103 2.2011 1.2726 46 1 1.6650 0.4188 2.4786 47 1 3.2058 1.2995 2.3417 48 1 2.6402 0.8973 4.9454 49 1 3.1512 0.5127 8.2212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267821073.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:44 Heat of formation + Delta-G solvation = -141.191435 kcal Electronic energy + Delta-G solvation = -31056.934078 eV Core-core repulsion = 26824.308956 eV Total energy + Delta-G solvation = -4232.625122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.27082 -40.51879 -39.88648 -38.66761 -37.39713 -35.94656 -35.24675 -34.12624 -33.29728 -32.77522 -30.14312 -29.40968 -28.12209 -26.57371 -26.04392 -24.67189 -23.01777 -22.52605 -21.74861 -20.83268 -20.17247 -19.81440 -18.60288 -18.34016 -18.31338 -17.14292 -17.07007 -16.52700 -16.49014 -16.19959 -15.90934 -15.82682 -15.51329 -15.21520 -14.98410 -14.92053 -14.70018 -14.64267 -14.37195 -14.03829 -13.67698 -13.51968 -13.50341 -13.40213 -13.26401 -13.16507 -12.89870 -12.73715 -12.40397 -12.39968 -12.25076 -12.15714 -12.12340 -11.87563 -11.70194 -11.48646 -11.15826 -10.81642 -10.33369 -10.15044 -10.07354 -9.99455 -9.33179 -8.45169 -5.93637 1.18938 1.38121 1.41823 1.51125 1.54562 2.07319 2.14275 2.29713 2.38489 2.93751 3.15791 3.21958 3.36030 3.50400 3.63512 3.69243 3.88753 4.01519 4.05898 4.13876 4.28117 4.34040 4.38797 4.45884 4.51243 4.55661 4.61199 4.64379 4.72194 4.75177 4.78000 4.90685 5.00779 5.08056 5.09412 5.11633 5.23072 5.35918 5.40403 5.42281 5.70036 5.88356 5.90264 6.09592 6.37682 6.46463 6.61569 7.07215 7.13255 7.14477 7.58064 8.13566 8.72308 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.003363 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.873395 B = 8324.245893 C =10072.185337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.153 4.153 3 C 0.082 3.918 4 H 0.103 0.897 5 C 0.124 3.876 6 N -0.704 5.704 7 C 0.528 3.472 8 O -0.562 6.562 9 C -0.120 4.120 10 C -0.128 4.128 11 C -0.116 4.116 12 C 0.101 3.899 13 N -0.714 5.714 14 C 0.527 3.473 15 O -0.556 6.556 16 N -0.668 5.668 17 C 0.064 3.936 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.331 4.331 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.413 0.587 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.121 0.879 44 H 0.423 0.577 45 H 0.351 0.649 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.394 0.606 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.262 1.533 -19.635 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.193 4.193 3 C -0.028 4.028 4 H 0.121 0.879 5 C 0.000 4.000 6 N -0.354 5.354 7 C 0.313 3.687 8 O -0.442 6.442 9 C -0.126 4.126 10 C -0.185 4.185 11 C -0.153 4.153 12 C -0.022 4.022 13 N -0.369 5.369 14 C 0.311 3.689 15 O -0.434 6.434 16 N -0.301 5.301 17 C -0.068 4.068 18 C 0.228 3.772 19 O -0.503 6.503 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.139 0.861 44 H 0.264 0.736 45 H 0.172 0.828 46 H 0.085 0.915 47 H 0.110 0.890 48 H 0.227 0.773 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.415 2.100 -19.615 21.858 hybrid contribution -1.010 -0.386 0.855 1.378 sum 8.405 1.713 -18.760 20.628 Atomic orbital electron populations 1.21744 0.94909 1.02632 1.01610 1.22149 0.96962 0.96512 1.03648 1.21963 0.93396 0.94522 0.92963 0.87909 1.21545 0.93596 0.82748 1.02079 1.45935 1.06919 1.10770 1.71819 1.20038 0.82646 0.90008 0.76019 1.90650 1.56111 1.46184 1.51209 1.21652 1.00709 0.92816 0.97472 1.21657 1.01847 1.01955 0.93083 1.22852 0.89500 1.05838 0.97140 1.22377 0.87253 0.98321 0.94246 1.46140 1.13341 1.53224 1.24236 1.20454 0.84396 0.79664 0.84351 1.90767 1.21477 1.52724 1.78400 1.60127 1.18366 1.51674 0.99895 1.21516 1.01531 0.95258 0.88521 1.20832 0.83558 0.87591 0.85232 1.90498 1.46232 1.26536 1.87055 1.41929 1.51184 1.23054 1.05021 1.19647 1.35536 1.05827 0.85053 0.90323 1.26008 0.96271 0.97369 1.01567 1.69677 1.39057 1.20862 1.26635 0.84960 0.78239 0.78226 0.77120 1.19667 1.19599 1.19759 0.94182 0.91541 0.91458 0.89258 0.91807 0.89950 0.92186 0.75063 0.91046 0.89444 0.92946 0.86930 0.87966 0.90436 0.86071 0.73638 0.82845 0.91461 0.89026 0.77263 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.49 71.98 0.68 -2.06 16 2 C -0.15 -2.82 5.12 30.59 0.16 -2.66 16 3 C 0.08 1.80 2.72 44.92 0.12 1.92 16 4 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 5 C 0.12 3.01 4.71 86.38 0.41 3.42 16 6 N -0.70 -19.57 5.25 -463.05 -2.43 -22.00 16 7 C 0.53 14.89 6.55 87.66 0.57 15.46 16 8 O -0.56 -17.68 15.46 -3.02 -0.05 -17.73 16 9 C -0.12 -2.82 0.74 -52.94 -0.04 -2.86 16 10 C -0.13 -3.25 8.31 71.98 0.60 -2.65 16 11 C -0.12 -1.85 6.06 31.77 0.19 -1.66 16 12 C 0.10 1.17 7.79 86.95 0.68 1.85 16 13 N -0.71 -11.33 6.24 -459.23 -2.87 -14.20 16 14 C 0.53 12.84 7.13 87.89 0.63 13.47 16 15 O -0.56 -17.77 17.84 -3.03 -0.05 -17.83 16 16 N -0.67 -19.91 5.34 -495.55 -2.64 -22.55 16 17 C 0.06 2.19 5.33 85.55 0.46 2.65 16 18 C 0.44 20.93 7.83 87.66 0.69 21.62 16 19 O -0.62 -33.93 15.90 -3.08 -0.05 -33.98 16 20 N -0.57 -29.69 5.29 -306.98 -1.62 -31.32 16 21 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -50.12 13.05 21.66 0.28 -49.83 16 25 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 29 H 0.04 0.87 7.17 -2.38 -0.02 0.85 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.30 6.33 -2.39 -0.02 1.28 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.60 6.58 -2.39 -0.02 1.58 16 36 H 0.41 12.50 7.55 -92.70 -0.70 11.80 16 37 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.05 1.61 7.58 -2.39 -0.02 1.59 16 40 H 0.11 1.31 7.91 -2.39 -0.02 1.29 16 41 H 0.10 1.86 6.94 -2.38 -0.02 1.84 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.42 4.96 8.96 -92.70 -0.83 4.13 16 45 H 0.35 10.83 7.34 -89.69 -0.66 10.17 16 46 H 0.07 2.06 6.52 -2.39 -0.02 2.04 16 47 H 0.09 3.07 6.17 -2.39 -0.01 3.06 16 48 H 0.39 19.57 7.90 -92.71 -0.73 18.84 16 49 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -74.64 397.91 -2.88 -77.52 By element: Atomic # 1 Polarization: 58.33 SS G_CDS: -1.90 Total: 56.43 kcal Atomic # 6 Polarization: 23.79 SS G_CDS: 6.42 Total: 30.21 kcal Atomic # 7 Polarization: -130.62 SS G_CDS: -9.28 Total: -139.90 kcal Atomic # 8 Polarization: -69.38 SS G_CDS: -0.15 Total: -69.53 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -74.64 -2.88 -77.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267821073.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.671 kcal (2) G-P(sol) polarization free energy of solvation -74.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds