Wall clock time and date at job start Sat Apr 11 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 H 1.09001 * 109.46926 * 51.69793 * 3 2 1 5 5 C 1.53002 * 109.47395 * 171.70255 * 3 2 1 6 6 N 1.46492 * 109.47323 * 174.99824 * 5 3 2 7 7 C 1.34774 * 120.00084 * 179.97438 * 6 5 3 8 8 O 1.21286 * 120.00171 * 354.67549 * 7 6 5 9 9 C 1.50701 * 120.00247 * 174.68185 * 7 6 5 10 10 C 1.50701 * 115.55049 * 302.94854 * 9 7 6 11 11 O 1.21271 * 120.00112 * 125.63145 * 10 9 7 12 12 N 1.34776 * 119.99602 * 305.63788 * 10 9 7 13 13 C 1.46495 * 119.99875 * 185.15343 * 12 10 9 14 14 C 1.53002 * 117.50182 * 157.27178 * 9 7 6 15 15 C 1.53009 * 117.49712 * 88.61454 * 9 7 6 16 16 N 1.46897 * 109.46832 * 291.69919 * 3 2 1 17 17 C 1.46901 * 111.00321 * 299.83834 * 16 3 2 18 18 C 1.50693 * 109.47261 * 183.44826 * 17 16 3 19 19 O 1.21290 * 120.00469 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00042 * 179.97438 * 18 17 16 21 21 C 1.37105 * 120.00461 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99316 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00070 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99624 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00087 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47089 * 90.00257 * 25 23 21 27 27 H 1.48504 * 109.46969 * 209.99753 * 25 23 21 28 28 H 1.48493 * 109.47452 * 329.99830 * 25 23 21 29 29 H 1.08997 * 109.46880 * 185.90263 * 1 2 3 30 30 H 1.08998 * 109.46960 * 305.90452 * 1 2 3 31 31 H 1.09001 * 109.46843 * 65.90458 * 1 2 3 32 32 H 1.09002 * 109.47500 * 239.99612 * 2 1 3 33 33 H 1.09001 * 109.47062 * 119.99541 * 2 1 3 34 34 H 1.09006 * 109.46742 * 295.00170 * 5 3 2 35 35 H 1.08995 * 109.46890 * 54.99076 * 5 3 2 36 36 H 0.96998 * 119.99884 * 0.02562 * 6 5 3 37 37 H 0.97006 * 119.99895 * 5.14471 * 12 10 9 38 38 H 1.08992 * 109.47685 * 59.99556 * 13 12 10 39 39 H 1.09002 * 109.47305 * 179.97438 * 13 12 10 40 40 H 1.09006 * 109.46695 * 299.98969 * 13 12 10 41 41 H 1.09005 * 117.49658 * 0.02562 * 14 9 7 42 42 H 1.08999 * 117.49805 * 145.01739 * 14 9 7 43 43 H 1.08998 * 117.49524 * 214.97843 * 15 9 7 44 44 H 1.08998 * 117.49822 * 359.97438 * 15 9 7 45 45 H 1.00902 * 110.99899 * 63.79525 * 16 3 2 46 46 H 1.08996 * 109.46990 * 303.45485 * 17 16 3 47 47 H 1.09002 * 109.46707 * 63.45061 * 17 16 3 48 48 H 0.96999 * 119.99886 * 0.02562 * 20 18 17 49 49 H 0.96994 * 120.00102 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5606 1.9973 0.8065 5 6 3.5558 1.4476 0.2082 6 7 4.0605 2.8177 0.0893 7 6 5.3768 3.0662 0.2370 8 8 6.1297 2.1730 0.5634 9 6 5.9134 4.4538 -0.0031 10 6 5.6345 5.0315 -1.3668 11 8 5.0873 6.1090 -1.4685 12 7 5.9931 4.3506 -2.4732 13 6 5.8254 4.9601 -3.7948 14 6 7.2405 4.8232 0.6627 15 6 5.9304 5.4198 1.1834 16 7 1.7204 2.0748 -1.2868 17 6 2.3542 1.3544 -2.3992 18 6 2.0747 2.0786 -3.6908 19 8 1.4130 3.0951 -3.6853 20 7 2.5608 1.5974 -4.8521 21 6 2.3070 2.2565 -6.0272 22 1 1.7179 3.1616 -6.0222 23 6 2.8078 1.7600 -7.2244 24 7 2.5649 2.3921 -8.3507 25 14 3.8262 0.1941 -7.2330 26 1 2.9310 -0.9776 -7.4088 27 1 4.8015 0.2441 -8.3518 28 1 4.5558 0.0710 -5.9455 29 1 -0.3633 -1.0222 0.1057 30 1 -0.3633 0.6027 0.8324 31 1 -0.3633 0.4196 -0.9381 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7876 1.0598 1.2002 35 1 4.0283 0.8194 -0.5469 36 1 3.4471 3.5462 -0.0951 37 1 6.3622 3.4570 -2.3945 38 1 6.4113 5.8776 -3.8488 39 1 6.1679 4.2651 -4.5615 40 1 4.7726 5.1910 -3.9575 41 1 7.7257 4.0624 1.2741 42 1 7.9117 5.4843 0.1145 43 1 5.7404 6.4731 0.9775 44 1 5.5532 5.0517 2.1374 45 1 0.7223 2.1395 -1.4199 46 1 3.4307 1.3069 -2.2348 47 1 1.9501 0.3436 -2.4546 48 1 3.0903 0.7847 -4.8565 49 1 2.9141 2.0453 -9.1865 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269481713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:58 Heat of formation + Delta-G solvation = -77.076292 kcal Electronic energy + Delta-G solvation = -31399.383423 eV Core-core repulsion = 27169.538542 eV Total energy + Delta-G solvation = -4229.844881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.76926 -39.31489 -38.66807 -37.51166 -36.10011 -34.48562 -34.25241 -33.96318 -31.99731 -31.63362 -29.12280 -27.54334 -26.82179 -24.82697 -24.05568 -23.10612 -22.68069 -21.43722 -20.51686 -19.67222 -19.31867 -18.52111 -18.21402 -16.85627 -16.37404 -16.09599 -15.83647 -15.66347 -15.11645 -15.05232 -14.96449 -14.61066 -14.51854 -14.20198 -13.99216 -13.95605 -13.36076 -13.21830 -13.07680 -12.68611 -12.65790 -12.56666 -12.35167 -12.06051 -11.94617 -11.88227 -11.87213 -11.54136 -11.28253 -11.24178 -10.98180 -10.95127 -10.76352 -10.64163 -10.23431 -10.01343 -9.70783 -9.60794 -9.14388 -9.03508 -8.66200 -8.24854 -8.19857 -6.34532 -3.85955 2.31580 2.46057 2.92711 2.97363 3.02223 3.09303 3.11156 3.64601 3.70352 4.03019 4.06951 4.46591 4.48190 4.52849 4.58872 4.65530 4.75486 4.81949 4.92607 5.12562 5.18166 5.26904 5.32405 5.39649 5.42923 5.46093 5.55515 5.57833 5.60150 5.65968 5.72948 5.73545 5.76331 5.86309 5.88053 5.97259 6.08117 6.16325 6.31663 6.42627 6.97234 7.40243 7.44567 7.48322 7.54241 8.05999 8.11155 8.19132 8.56107 8.91856 9.38894 9.79397 10.78554 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008499 B = 0.004481 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3293.577136 B = 6246.519857 C = 8310.248979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 C 0.073 3.927 4 H 0.092 0.908 5 C 0.125 3.875 6 N -0.704 5.704 7 C 0.553 3.447 8 O -0.540 6.540 9 C -0.199 4.199 10 C 0.555 3.445 11 O -0.525 6.525 12 N -0.720 5.720 13 C 0.087 3.913 14 C -0.125 4.125 15 C -0.126 4.126 16 N -0.658 5.658 17 C 0.041 3.959 18 C 0.451 3.549 19 O -0.560 6.560 20 N -0.591 5.591 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.043 3.957 24 N -0.880 5.880 25 Si 0.877 3.123 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.415 0.585 37 H 0.401 0.599 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.355 0.645 46 H 0.085 0.915 47 H 0.049 0.951 48 H 0.369 0.631 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.253 -3.243 19.046 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.111 0.889 5 C 0.001 3.999 6 N -0.355 5.355 7 C 0.338 3.662 8 O -0.417 6.417 9 C -0.206 4.206 10 C 0.339 3.661 11 O -0.401 6.401 12 N -0.370 5.370 13 C -0.056 4.056 14 C -0.163 4.163 15 C -0.163 4.163 16 N -0.291 5.291 17 C -0.092 4.092 18 C 0.237 3.763 19 O -0.442 6.442 20 N -0.231 5.231 21 C -0.431 4.431 22 H 0.137 0.863 23 C -0.160 4.160 24 N -0.520 5.520 25 Si 0.703 3.297 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.252 0.748 37 H 0.234 0.766 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.134 0.866 44 H 0.125 0.875 45 H 0.176 0.824 46 H 0.103 0.897 47 H 0.066 0.934 48 H 0.201 0.799 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.444 -1.904 18.939 20.096 hybrid contribution 0.130 -2.369 -0.565 2.439 sum 6.574 -4.273 18.374 19.977 Atomic orbital electron populations 1.21757 0.95095 1.01965 1.02204 1.22220 0.96935 0.97831 1.03041 1.21959 0.94411 0.93806 0.93634 0.88949 1.21467 0.93212 0.83387 1.01797 1.45788 1.07742 1.10734 1.71284 1.19093 0.82375 0.87704 0.77066 1.90703 1.57622 1.45942 1.47436 1.21533 1.07630 0.96337 0.95093 1.18980 0.78202 0.84837 0.84087 1.90731 1.40923 1.21800 1.86665 1.45661 1.64928 1.19814 1.06582 1.21636 1.03342 0.98473 0.82160 1.23054 0.89359 1.02624 1.01253 1.23071 0.99720 0.98874 0.94659 1.60203 1.17510 1.51857 0.99518 1.21804 1.00476 0.95624 0.91298 1.19670 0.85067 0.87464 0.84127 1.90582 1.41927 1.25484 1.86194 1.42205 1.48682 1.25178 1.07038 1.19407 1.32150 1.09753 0.81839 0.86306 1.25011 0.97927 0.97991 0.95086 1.69617 1.45040 1.39267 0.98124 0.86726 0.80774 0.83863 0.78318 1.19691 1.20168 1.19607 0.92483 0.92414 0.92432 0.91103 0.91235 0.90957 0.91383 0.74820 0.76586 0.92417 0.90230 0.90942 0.86723 0.87520 0.86556 0.87512 0.82374 0.89682 0.93355 0.79890 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.61 37.16 0.36 -0.95 16 2 C -0.16 -1.39 5.26 -26.73 -0.14 -1.53 16 3 C 0.07 0.72 2.68 -67.71 -0.18 0.54 16 4 H 0.09 0.83 8.11 -51.93 -0.42 0.40 16 5 C 0.13 1.34 4.65 -4.05 -0.02 1.32 16 6 N -0.70 -8.48 5.36 -60.30 -0.32 -8.80 16 7 C 0.55 7.18 6.95 -10.99 -0.08 7.10 16 8 O -0.54 -8.15 16.51 5.55 0.09 -8.06 16 9 C -0.20 -2.42 2.33 -156.81 -0.36 -2.78 16 10 C 0.55 8.22 7.14 -10.99 -0.08 8.14 16 11 O -0.53 -9.53 16.46 5.57 0.09 -9.44 16 12 N -0.72 -10.01 5.68 -67.08 -0.38 -10.39 16 13 C 0.09 1.27 10.71 59.84 0.64 1.91 16 14 C -0.13 -1.21 9.75 -26.69 -0.26 -1.47 16 15 C -0.13 -1.23 9.75 -26.69 -0.26 -1.49 16 16 N -0.66 -8.84 5.43 -108.00 -0.59 -9.42 16 17 C 0.04 0.62 5.38 -4.98 -0.03 0.60 16 18 C 0.45 9.73 7.83 -10.99 -0.09 9.64 16 19 O -0.56 -14.45 15.85 5.55 0.09 -14.36 16 20 N -0.59 -13.49 5.09 -10.97 -0.06 -13.54 16 21 C -0.30 -8.28 10.16 -14.93 -0.15 -8.43 16 22 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.15 13.96 55.50 0.77 -24.37 16 25 Si 0.88 18.87 27.74 -169.99 -4.71 14.16 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 28 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.12 -51.93 -0.42 0.02 16 31 H 0.06 0.56 7.22 -51.93 -0.38 0.19 16 32 H 0.07 0.67 6.07 -51.93 -0.32 0.36 16 33 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.79 6.60 -51.93 -0.34 0.45 16 36 H 0.42 5.34 8.14 -40.82 -0.33 5.00 16 37 H 0.40 4.98 8.69 -40.82 -0.35 4.62 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.11 1.07 7.85 -51.93 -0.41 0.66 16 42 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.12 1.17 7.81 -51.93 -0.41 0.77 16 44 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.36 5.01 7.39 -39.29 -0.29 4.72 16 46 H 0.09 1.25 6.23 -51.93 -0.32 0.92 16 47 H 0.05 0.66 6.32 -51.93 -0.33 0.33 16 48 H 0.37 7.46 5.76 -40.82 -0.24 7.23 16 49 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 405.65 15.07 6.11 6.11 Total: -1.00 -34.08 405.65 -7.14 -41.21 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -7.49 Total: 23.26 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: -0.74 Total: 13.65 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -0.57 Total: -66.53 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: 0.27 Total: -31.86 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.08 -7.14 -41.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269481713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.864 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds