Wall clock time and date at job start Sat Apr 11 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 H 1.09001 * 109.46926 * 51.69793 * 3 2 1 5 5 C 1.53002 * 109.47395 * 171.70255 * 3 2 1 6 6 N 1.46492 * 109.47323 * 174.99824 * 5 3 2 7 7 C 1.34774 * 120.00084 * 179.97438 * 6 5 3 8 8 O 1.21286 * 120.00171 * 354.67549 * 7 6 5 9 9 C 1.50701 * 120.00247 * 174.68185 * 7 6 5 10 10 C 1.50701 * 115.55049 * 302.94854 * 9 7 6 11 11 O 1.21271 * 120.00112 * 125.63145 * 10 9 7 12 12 N 1.34776 * 119.99602 * 305.63788 * 10 9 7 13 13 C 1.46495 * 119.99875 * 185.15343 * 12 10 9 14 14 C 1.53002 * 117.50182 * 157.27178 * 9 7 6 15 15 C 1.53009 * 117.49712 * 88.61454 * 9 7 6 16 16 N 1.46897 * 109.46832 * 291.69919 * 3 2 1 17 17 C 1.46901 * 111.00321 * 299.83834 * 16 3 2 18 18 C 1.50693 * 109.47261 * 183.44826 * 17 16 3 19 19 O 1.21290 * 120.00469 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00042 * 179.97438 * 18 17 16 21 21 C 1.37105 * 120.00461 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99316 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00070 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99624 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00087 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47089 * 90.00257 * 25 23 21 27 27 H 1.48504 * 109.46969 * 209.99753 * 25 23 21 28 28 H 1.48493 * 109.47452 * 329.99830 * 25 23 21 29 29 H 1.08997 * 109.46880 * 185.90263 * 1 2 3 30 30 H 1.08998 * 109.46960 * 305.90452 * 1 2 3 31 31 H 1.09001 * 109.46843 * 65.90458 * 1 2 3 32 32 H 1.09002 * 109.47500 * 239.99612 * 2 1 3 33 33 H 1.09001 * 109.47062 * 119.99541 * 2 1 3 34 34 H 1.09006 * 109.46742 * 295.00170 * 5 3 2 35 35 H 1.08995 * 109.46890 * 54.99076 * 5 3 2 36 36 H 0.96998 * 119.99884 * 0.02562 * 6 5 3 37 37 H 0.97006 * 119.99895 * 5.14471 * 12 10 9 38 38 H 1.08992 * 109.47685 * 59.99556 * 13 12 10 39 39 H 1.09002 * 109.47305 * 179.97438 * 13 12 10 40 40 H 1.09006 * 109.46695 * 299.98969 * 13 12 10 41 41 H 1.09005 * 117.49658 * 0.02562 * 14 9 7 42 42 H 1.08999 * 117.49805 * 145.01739 * 14 9 7 43 43 H 1.08998 * 117.49524 * 214.97843 * 15 9 7 44 44 H 1.08998 * 117.49822 * 359.97438 * 15 9 7 45 45 H 1.00902 * 110.99899 * 63.79525 * 16 3 2 46 46 H 1.08996 * 109.46990 * 303.45485 * 17 16 3 47 47 H 1.09002 * 109.46707 * 63.45061 * 17 16 3 48 48 H 0.96999 * 119.99886 * 0.02562 * 20 18 17 49 49 H 0.96994 * 120.00102 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5606 1.9973 0.8065 5 6 3.5558 1.4476 0.2082 6 7 4.0605 2.8177 0.0893 7 6 5.3768 3.0662 0.2370 8 8 6.1297 2.1730 0.5634 9 6 5.9134 4.4538 -0.0031 10 6 5.6345 5.0315 -1.3668 11 8 5.0873 6.1090 -1.4685 12 7 5.9931 4.3506 -2.4732 13 6 5.8254 4.9601 -3.7948 14 6 7.2405 4.8232 0.6627 15 6 5.9304 5.4198 1.1834 16 7 1.7204 2.0748 -1.2868 17 6 2.3542 1.3544 -2.3992 18 6 2.0747 2.0786 -3.6908 19 8 1.4130 3.0951 -3.6853 20 7 2.5608 1.5974 -4.8521 21 6 2.3070 2.2565 -6.0272 22 1 1.7179 3.1616 -6.0222 23 6 2.8078 1.7600 -7.2244 24 7 2.5649 2.3921 -8.3507 25 14 3.8262 0.1941 -7.2330 26 1 2.9310 -0.9776 -7.4088 27 1 4.8015 0.2441 -8.3518 28 1 4.5558 0.0710 -5.9455 29 1 -0.3633 -1.0222 0.1057 30 1 -0.3633 0.6027 0.8324 31 1 -0.3633 0.4196 -0.9381 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7876 1.0598 1.2002 35 1 4.0283 0.8194 -0.5469 36 1 3.4471 3.5462 -0.0951 37 1 6.3622 3.4570 -2.3945 38 1 6.4113 5.8776 -3.8488 39 1 6.1679 4.2651 -4.5615 40 1 4.7726 5.1910 -3.9575 41 1 7.7257 4.0624 1.2741 42 1 7.9117 5.4843 0.1145 43 1 5.7404 6.4731 0.9775 44 1 5.5532 5.0517 2.1374 45 1 0.7223 2.1395 -1.4199 46 1 3.4307 1.3069 -2.2348 47 1 1.9501 0.3436 -2.4546 48 1 3.0903 0.7847 -4.8565 49 1 2.9141 2.0453 -9.1865 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269481713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:57 Heat of formation + Delta-G solvation = -106.563320 kcal Electronic energy + Delta-G solvation = -31400.662076 eV Core-core repulsion = 27169.538542 eV Total energy + Delta-G solvation = -4231.123534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.79806 -40.58772 -40.05263 -38.74870 -37.03034 -35.99897 -35.71614 -35.14585 -33.74644 -32.90257 -30.06449 -28.73753 -28.19543 -26.07223 -25.49344 -23.96419 -23.44773 -22.48324 -21.69981 -21.09610 -20.66916 -20.16791 -19.25243 -18.27597 -17.39108 -17.12934 -17.10606 -16.95649 -16.61991 -16.21483 -16.12940 -15.84344 -15.64459 -15.31385 -15.15298 -15.10863 -14.78642 -14.38624 -14.29730 -14.07173 -14.01476 -13.91614 -13.57725 -13.26031 -13.22167 -12.96923 -12.73446 -12.64986 -12.41847 -12.33023 -12.18619 -11.99189 -11.84657 -11.69422 -11.64791 -11.50893 -11.25918 -10.82486 -10.43583 -10.26406 -10.23504 -10.08554 -9.34402 -8.39896 -6.00124 1.27064 1.28426 1.33514 1.39089 1.42341 1.96633 2.00041 2.04870 2.21893 2.70279 2.77706 3.16431 3.38742 3.56373 3.61230 3.67867 3.69799 3.80090 3.99692 4.14344 4.16413 4.31421 4.32475 4.40429 4.47296 4.49915 4.55948 4.59119 4.66064 4.74315 4.81007 4.84479 4.88032 4.93250 5.11639 5.12461 5.24684 5.25757 5.37937 5.38898 5.53338 5.90964 6.03448 6.32063 6.34929 6.45168 6.60439 6.90088 7.02049 7.09772 7.40823 7.97696 8.77697 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008499 B = 0.004481 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3293.577136 B = 6246.519857 C = 8310.248979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.154 4.154 3 C 0.081 3.919 4 H 0.107 0.893 5 C 0.124 3.876 6 N -0.703 5.703 7 C 0.557 3.443 8 O -0.559 6.559 9 C -0.216 4.216 10 C 0.553 3.447 11 O -0.566 6.566 12 N -0.715 5.715 13 C 0.091 3.909 14 C -0.108 4.108 15 C -0.116 4.116 16 N -0.672 5.672 17 C 0.059 3.941 18 C 0.451 3.549 19 O -0.609 6.609 20 N -0.591 5.591 21 C -0.321 4.321 22 H 0.054 0.946 23 C -0.011 4.011 24 N -0.933 5.933 25 Si 0.958 3.042 26 H -0.259 1.259 27 H -0.276 1.276 28 H -0.233 1.233 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.411 0.589 37 H 0.410 0.590 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.031 0.969 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.125 0.875 45 H 0.351 0.649 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.386 0.614 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.118 -6.277 21.650 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.194 4.194 3 C -0.029 4.029 4 H 0.124 0.876 5 C 0.000 4.000 6 N -0.352 5.352 7 C 0.342 3.658 8 O -0.439 6.439 9 C -0.223 4.223 10 C 0.339 3.661 11 O -0.445 6.445 12 N -0.364 5.364 13 C -0.053 4.053 14 C -0.146 4.146 15 C -0.153 4.153 16 N -0.305 5.305 17 C -0.074 4.074 18 C 0.239 3.761 19 O -0.493 6.493 20 N -0.233 5.233 21 C -0.450 4.450 22 H 0.072 0.928 23 C -0.209 4.209 24 N -0.574 5.574 25 Si 0.779 3.221 26 H -0.184 1.184 27 H -0.201 1.201 28 H -0.156 1.156 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.247 0.753 37 H 0.245 0.755 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.050 0.950 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.130 0.870 44 H 0.143 0.857 45 H 0.171 0.829 46 H 0.118 0.882 47 H 0.095 0.905 48 H 0.222 0.778 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.314 -4.978 21.581 23.657 hybrid contribution -0.554 -1.301 -1.337 1.946 sum 7.761 -6.279 20.244 22.571 Atomic orbital electron populations 1.21753 0.95099 1.02510 1.01610 1.22167 0.96804 0.96591 1.03817 1.22006 0.94147 0.94856 0.91850 0.87551 1.21599 0.93352 0.82510 1.02522 1.45867 1.07478 1.11249 1.70653 1.19109 0.82390 0.87583 0.76682 1.90692 1.58048 1.46461 1.48664 1.21459 1.10179 0.96547 0.94070 1.19449 0.77187 0.84292 0.85170 1.90709 1.42739 1.23681 1.87382 1.45660 1.64446 1.20148 1.06193 1.21545 1.00884 0.99663 0.83197 1.23172 0.88761 1.02419 1.00230 1.23185 0.99632 0.98188 0.94297 1.60169 1.17163 1.52789 1.00369 1.21635 1.01630 0.95902 0.88203 1.20906 0.82822 0.86700 0.85700 1.90564 1.43619 1.27840 1.87234 1.42024 1.49513 1.25684 1.06078 1.18938 1.32812 1.08827 0.84469 0.92755 1.26003 0.98879 1.02318 0.93728 1.69801 1.46586 1.41857 0.99190 0.85460 0.78806 0.77827 0.80034 1.18405 1.20068 1.15610 0.91669 0.91616 0.94189 0.91532 0.89182 0.89419 0.91814 0.75338 0.75492 0.91315 0.88623 0.95034 0.85801 0.86615 0.87041 0.85655 0.82864 0.88200 0.90486 0.77844 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.61 71.98 0.69 -1.51 16 2 C -0.15 -2.13 5.26 30.59 0.16 -1.97 16 3 C 0.08 1.38 2.68 44.92 0.12 1.50 16 4 H 0.11 1.58 8.11 -2.39 -0.02 1.56 16 5 C 0.12 2.27 4.65 86.38 0.40 2.67 16 6 N -0.70 -15.54 5.36 -463.07 -2.48 -18.02 16 7 C 0.56 13.34 6.95 87.66 0.61 13.95 16 8 O -0.56 -15.48 16.51 -3.05 -0.05 -15.53 16 9 C -0.22 -4.93 2.33 -53.67 -0.12 -5.05 16 10 C 0.55 16.31 7.14 87.66 0.63 16.93 16 11 O -0.57 -21.05 16.46 -3.00 -0.05 -21.10 16 12 N -0.71 -19.68 5.68 -484.54 -2.75 -22.43 16 13 C 0.09 2.72 10.71 127.77 1.37 4.09 16 14 C -0.11 -1.85 9.75 30.62 0.30 -1.55 16 15 C -0.12 -2.05 9.75 30.62 0.30 -1.76 16 16 N -0.67 -17.12 5.43 -495.59 -2.69 -19.81 16 17 C 0.06 1.68 5.38 85.55 0.46 2.15 16 18 C 0.45 19.61 7.83 87.66 0.69 20.29 16 19 O -0.61 -32.84 15.85 -3.06 -0.05 -32.89 16 20 N -0.59 -26.99 5.09 -307.00 -1.56 -28.55 16 21 C -0.32 -18.34 10.16 84.04 0.85 -17.49 16 22 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 23 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 24 N -0.93 -55.38 13.96 21.66 0.30 -55.08 16 25 Si 0.96 37.92 27.74 68.60 1.90 39.82 16 26 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 27 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 28 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.04 0.72 7.22 -2.39 -0.02 0.70 16 32 H 0.07 1.00 6.07 -2.39 -0.01 0.99 16 33 H 0.09 0.94 8.13 -2.39 -0.02 0.92 16 34 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.06 1.26 6.60 -2.39 -0.02 1.24 16 36 H 0.41 10.08 8.14 -92.71 -0.76 9.32 16 37 H 0.41 9.70 8.69 -92.70 -0.81 8.89 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.12 1.94 7.85 -2.38 -0.02 1.93 16 42 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.11 2.13 7.81 -2.39 -0.02 2.11 16 44 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.35 9.65 7.39 -89.69 -0.66 8.99 16 46 H 0.10 2.64 6.23 -2.39 -0.01 2.62 16 47 H 0.08 1.83 6.32 -2.39 -0.02 1.82 16 48 H 0.39 14.75 5.76 -92.71 -0.53 14.22 16 49 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -80.09 405.65 -2.31 -82.40 By element: Atomic # 1 Polarization: 60.83 SS G_CDS: -1.80 Total: 59.03 kcal Atomic # 6 Polarization: 25.24 SS G_CDS: 6.92 Total: 32.15 kcal Atomic # 7 Polarization: -134.70 SS G_CDS: -9.19 Total: -143.89 kcal Atomic # 8 Polarization: -69.37 SS G_CDS: -0.15 Total: -69.52 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 1.90 Total: 39.82 kcal Total: -80.09 -2.31 -82.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269481713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.160 kcal (2) G-P(sol) polarization free energy of solvation -80.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds