Wall clock time and date at job start Sat Apr 11 2020 06:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 120.00187 * 2 1 4 4 N 1.46503 * 109.47183 * 124.99431 * 3 2 1 5 5 C 1.46909 * 124.36987 * 90.00281 * 4 3 2 6 6 C 1.54763 * 105.53163 * 163.22435 * 5 4 3 7 7 H 1.08994 * 111.02990 * 266.26816 * 6 5 4 8 8 C 1.50703 * 111.03120 * 142.35332 * 6 5 4 9 9 C 1.38237 * 119.99853 * 322.86854 * 8 6 5 10 10 C 1.38235 * 119.99845 * 179.78700 * 9 8 6 11 11 C 1.38234 * 120.00258 * 0.44665 * 10 9 8 12 12 C 1.38242 * 119.99503 * 359.80805 * 11 10 9 13 13 C 1.38228 * 120.00082 * 143.14313 * 8 6 5 14 14 C 1.53376 * 101.43985 * 24.31422 * 6 5 4 15 15 C 1.53879 * 111.13906 * 97.84408 * 14 6 5 16 16 C 1.55139 * 101.51834 * 154.82195 * 15 14 6 17 17 N 1.47948 * 104.94469 * 324.19056 * 16 15 14 18 18 C 1.46902 * 111.00062 * 146.10408 * 17 16 15 19 19 C 1.50695 * 109.47118 * 69.21751 * 18 17 16 20 20 H 1.08000 * 120.00096 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00115 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99733 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99884 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46945 * 90.00434 * 23 21 19 25 25 H 1.48509 * 109.46842 * 210.00143 * 23 21 19 26 26 H 1.48494 * 109.47576 * 329.99976 * 23 21 19 27 27 C 1.47768 * 108.52001 * 23.86969 * 17 16 15 28 28 C 1.34827 * 124.38223 * 270.00361 * 4 3 2 29 29 O 1.21284 * 125.18173 * 1.15028 * 28 4 3 30 30 H 1.08004 * 120.00416 * 179.97438 * 1 2 3 31 31 H 1.08007 * 119.99889 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.99703 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.46944 * 5.00305 * 3 2 1 34 34 H 1.09000 * 109.47644 * 245.00249 * 3 2 1 35 35 H 1.09000 * 110.24137 * 44.20851 * 5 4 3 36 36 H 1.09005 * 110.23615 * 282.23740 * 5 4 3 37 37 H 1.08001 * 120.00272 * 0.02562 * 9 8 6 38 38 H 1.08001 * 119.99853 * 180.27554 * 10 9 8 39 39 H 1.07998 * 120.00382 * 179.83318 * 11 10 9 40 40 H 1.07997 * 119.99499 * 180.02562 * 12 11 10 41 41 H 1.08004 * 120.00288 * 359.97438 * 13 8 6 42 42 H 1.08991 * 111.01779 * 36.76221 * 15 14 6 43 43 H 1.09000 * 111.01325 * 272.87586 * 15 14 6 44 44 H 1.08998 * 110.34385 * 205.32050 * 16 15 14 45 45 H 1.09000 * 110.34838 * 83.06143 * 16 15 14 46 46 H 1.09006 * 109.47103 * 189.21679 * 18 17 16 47 47 H 1.09000 * 109.47447 * 309.21209 * 18 17 16 48 48 H 0.97005 * 120.00280 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.98101 * 117.50383 * 27 17 16 50 50 H 1.09007 * 109.97134 * 238.78289 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 4.3806 0.8504 1.0766 6 6 5.0798 1.4588 2.3160 7 1 5.5742 2.3972 2.0649 8 6 6.0547 0.4817 2.9210 9 6 5.7529 -0.8670 2.9506 10 6 6.6490 -1.7638 3.5016 11 6 7.8428 -1.3109 4.0314 12 6 8.1422 0.0384 4.0065 13 6 7.2480 0.9347 3.4515 14 6 3.8878 1.6975 3.2512 15 6 3.7445 0.5538 4.2707 16 6 3.0046 1.2662 5.4334 17 7 3.5553 2.6393 5.4517 18 6 2.5301 3.6123 5.8518 19 6 2.1915 3.4156 7.3070 20 1 2.6879 2.6445 7.8774 21 6 1.2480 4.2200 7.9102 22 7 0.6432 5.1586 7.2154 23 14 0.8279 3.9756 9.7138 24 1 1.7197 4.8200 10.5485 25 1 -0.5857 4.3646 9.9499 26 1 1.0156 2.5480 10.0768 27 6 4.0849 2.9505 4.1077 28 6 2.6877 1.8015 2.3577 29 8 1.6066 2.2411 2.6880 30 1 -0.5401 -0.9353 -0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 4.8641 1.1966 0.1632 36 1 4.4040 -0.2383 1.1271 37 1 4.8187 -1.2206 2.5398 38 1 6.4152 -2.8181 3.5208 39 1 8.5418 -2.0113 4.4643 40 1 9.0751 0.3922 4.4199 41 1 7.4820 1.9889 3.4320 42 1 4.7211 0.1921 4.5922 43 1 3.1427 -0.2590 3.8642 44 1 3.2101 0.7628 6.3781 45 1 1.9319 1.2905 5.2416 46 1 2.9096 4.6229 5.7004 47 1 1.6348 3.4662 5.2475 48 1 -0.0209 5.7243 7.6396 49 1 3.5359 3.7872 3.6756 50 1 5.1453 3.1943 4.1727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031199.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:10 Heat of formation + Delta-G solvation = 36.764029 kcal Electronic energy + Delta-G solvation = -30753.192697 eV Core-core repulsion = 26939.133566 eV Total energy + Delta-G solvation = -3814.059131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.51562 -39.10910 -37.44292 -36.39672 -34.93915 -32.93866 -32.28425 -31.08824 -30.43467 -29.32072 -27.91014 -26.62207 -26.04753 -23.94596 -22.93222 -22.28513 -21.90774 -20.59816 -20.00210 -19.75497 -18.84892 -17.12931 -16.58316 -16.36012 -15.97234 -15.41613 -15.25057 -15.10233 -14.78503 -14.63794 -14.49991 -13.94697 -13.63711 -13.54334 -13.31672 -13.30324 -12.92018 -12.85161 -12.67534 -12.36116 -12.27346 -11.88826 -11.77140 -11.48694 -11.45503 -11.27379 -11.11569 -11.00191 -10.88328 -10.72593 -10.52550 -10.43597 -10.18258 -9.79194 -9.72315 -9.28271 -9.03650 -8.94600 -8.71980 -8.65874 -8.30597 -7.12891 -5.88951 -3.89744 1.23668 1.33363 1.99730 2.76719 3.12004 3.40031 3.45104 3.49455 3.66216 4.23491 4.36835 4.50811 4.54344 4.74470 4.80115 4.83545 4.90749 4.94259 4.97993 5.10481 5.11099 5.21253 5.23155 5.33092 5.40179 5.44793 5.49895 5.53765 5.56245 5.72895 5.76022 5.86079 5.91229 5.95884 5.99197 6.11136 6.27944 6.36336 6.38114 6.41613 6.44005 6.45912 6.52587 6.63667 6.72915 6.78656 6.90643 7.12858 7.31772 7.61104 7.92544 8.16539 8.33131 8.37674 8.66735 9.18066 9.73355 11.22074 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008819 B = 0.004220 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.105399 B = 6634.191489 C = 8902.061258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.181 4.181 3 C 0.155 3.845 4 N -0.626 5.626 5 C 0.109 3.891 6 C -0.050 4.050 7 H 0.101 0.899 8 C -0.061 4.061 9 C -0.112 4.112 10 C -0.121 4.121 11 C -0.123 4.123 12 C -0.117 4.117 13 C -0.105 4.105 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.059 3.941 17 N -0.519 5.519 18 C 0.188 3.812 19 C -0.503 4.503 20 H 0.061 0.939 21 C 0.054 3.946 22 N -0.898 5.898 23 Si 0.896 3.104 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.274 1.274 27 C 0.069 3.931 28 C 0.531 3.469 29 O -0.499 6.499 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.048 0.952 46 H 0.025 0.975 47 H 0.003 0.997 48 H 0.259 0.741 49 H 0.052 0.948 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.726 -13.925 -17.203 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.200 4.200 3 C 0.033 3.967 4 N -0.361 5.361 5 C -0.014 4.014 6 C -0.069 4.069 7 H 0.119 0.881 8 C -0.061 4.061 9 C -0.130 4.130 10 C -0.139 4.139 11 C -0.141 4.141 12 C -0.135 4.135 13 C -0.123 4.123 14 C -0.109 4.109 15 C -0.149 4.149 16 C -0.069 4.069 17 N -0.244 5.244 18 C 0.062 3.938 19 C -0.542 4.542 20 H 0.079 0.921 21 C -0.147 4.147 22 N -0.538 5.538 23 Si 0.724 3.276 24 H -0.207 1.207 25 H -0.214 1.214 26 H -0.199 1.199 27 C -0.060 4.060 28 C 0.318 3.682 29 O -0.372 6.372 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.043 0.957 47 H 0.021 0.979 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.322 -13.466 -16.684 24.729 hybrid contribution -1.032 -0.148 0.342 1.097 sum 11.290 -13.615 -16.342 24.081 Atomic orbital electron populations 1.23920 0.95912 1.02191 0.98490 1.23254 0.96351 0.98729 1.01688 1.20422 0.91944 0.95975 0.88326 1.48440 1.12743 1.63589 1.11351 1.22305 0.81189 0.99301 0.98584 1.20964 0.93778 0.98373 0.93828 0.88092 1.19371 0.94303 0.93476 0.98975 1.21045 0.99254 0.92740 0.99975 1.21078 0.94328 0.99469 0.98991 1.21134 0.97220 0.95812 0.99933 1.21122 0.99575 0.93364 0.99397 1.21024 0.93425 0.99871 0.98003 1.21777 0.92679 1.00699 0.95710 1.22828 1.02109 0.95219 0.94710 1.22900 0.97404 0.89900 0.96680 1.63874 1.37020 1.02652 1.20815 1.19933 0.87908 0.90021 0.95905 1.21152 1.20899 1.17078 0.95056 0.92090 1.24982 0.96191 0.95393 0.98101 1.69978 1.27150 1.20581 1.36094 0.86531 0.77349 0.78386 0.85317 1.20726 1.21412 1.19930 1.22562 1.00511 0.93650 0.89291 1.20422 0.89166 0.76414 0.82163 1.90800 1.25398 1.44223 1.76730 0.88339 0.88199 0.87422 0.89633 0.89798 0.90357 0.90784 0.86046 0.86236 0.86347 0.86093 0.85823 0.88919 0.91954 0.90996 0.93353 0.95705 0.97898 0.93094 0.92968 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 14.32 29.01 0.42 -1.34 16 2 C -0.18 -1.88 9.85 -36.03 -0.35 -2.24 16 3 C 0.15 1.67 6.38 -5.20 -0.03 1.64 16 4 N -0.63 -7.90 2.93 -173.92 -0.51 -8.41 16 5 C 0.11 1.04 6.82 -2.89 -0.02 1.02 16 6 C -0.05 -0.56 2.74 -90.65 -0.25 -0.80 16 7 H 0.10 1.02 7.83 -51.93 -0.41 0.62 16 8 C -0.06 -0.64 3.67 -104.62 -0.38 -1.02 16 9 C -0.11 -1.10 6.53 -39.58 -0.26 -1.36 16 10 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 11 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 12 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 13 C -0.11 -1.08 9.69 -39.59 -0.38 -1.46 16 14 C -0.10 -1.61 0.60 -155.33 -0.09 -1.71 16 15 C -0.11 -1.76 4.58 -25.14 -0.12 -1.88 16 16 C 0.06 1.25 6.09 -2.12 -0.01 1.23 16 17 N -0.52 -11.93 5.17 -232.99 -1.20 -13.13 16 18 C 0.19 5.28 4.33 -4.98 -0.02 5.26 16 19 C -0.50 -14.99 8.81 -34.44 -0.30 -15.29 16 20 H 0.06 1.79 7.77 -52.49 -0.41 1.38 16 21 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -28.23 13.29 55.43 0.74 -27.49 16 23 Si 0.90 22.67 29.54 -169.99 -5.02 17.65 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 27 C 0.07 1.31 5.95 -3.32 -0.02 1.29 16 28 C 0.53 9.12 6.59 -11.31 -0.07 9.05 16 29 O -0.50 -11.14 17.47 5.55 0.10 -11.05 16 30 H 0.10 0.89 8.06 -52.48 -0.42 0.47 16 31 H 0.10 1.09 7.84 -52.48 -0.41 0.68 16 32 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.09 1.06 7.61 -51.92 -0.39 0.67 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.63 5.69 -51.93 -0.30 0.33 16 37 H 0.12 1.10 6.17 -52.49 -0.32 0.78 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 42 H 0.09 1.38 5.20 -51.93 -0.27 1.11 16 43 H 0.06 0.94 7.88 -51.93 -0.41 0.53 16 44 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.05 1.16 7.62 -51.93 -0.40 0.77 16 46 H 0.02 0.74 8.04 -51.93 -0.42 0.33 16 47 H 0.00 0.10 7.85 -51.93 -0.41 -0.31 16 48 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 49 H 0.05 1.10 7.24 -51.93 -0.38 0.72 16 50 H 0.07 1.22 7.79 -51.92 -0.40 0.81 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -35.49 397.83 -10.96 -46.45 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.86 Total: 0.57 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -3.20 Total: -10.58 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.98 Total: -49.04 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.10 Total: -11.05 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.49 -10.96 -46.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031199.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.215 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds