Wall clock time and date at job start Sat Apr 11 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 120.00187 * 2 1 4 4 N 1.46503 * 109.47183 * 124.99431 * 3 2 1 5 5 C 1.46909 * 124.36987 * 90.00281 * 4 3 2 6 6 C 1.54763 * 105.53163 * 163.22435 * 5 4 3 7 7 H 1.08994 * 111.02990 * 266.26816 * 6 5 4 8 8 C 1.50703 * 111.03120 * 142.35332 * 6 5 4 9 9 C 1.38237 * 119.99853 * 322.86854 * 8 6 5 10 10 C 1.38235 * 119.99845 * 179.78700 * 9 8 6 11 11 C 1.38234 * 120.00258 * 0.44665 * 10 9 8 12 12 C 1.38242 * 119.99503 * 359.80805 * 11 10 9 13 13 C 1.38228 * 120.00082 * 143.14313 * 8 6 5 14 14 C 1.53376 * 101.43985 * 24.31422 * 6 5 4 15 15 C 1.53879 * 111.13906 * 97.84408 * 14 6 5 16 16 C 1.55139 * 101.51834 * 154.82195 * 15 14 6 17 17 N 1.47948 * 104.94469 * 324.19056 * 16 15 14 18 18 C 1.46902 * 111.00062 * 146.10408 * 17 16 15 19 19 C 1.50695 * 109.47118 * 69.21751 * 18 17 16 20 20 H 1.08000 * 120.00096 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00115 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99733 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99884 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46945 * 90.00434 * 23 21 19 25 25 H 1.48509 * 109.46842 * 210.00143 * 23 21 19 26 26 H 1.48494 * 109.47576 * 329.99976 * 23 21 19 27 27 C 1.47768 * 108.52001 * 23.86969 * 17 16 15 28 28 C 1.34827 * 124.38223 * 270.00361 * 4 3 2 29 29 O 1.21284 * 125.18173 * 1.15028 * 28 4 3 30 30 H 1.08004 * 120.00416 * 179.97438 * 1 2 3 31 31 H 1.08007 * 119.99889 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.99703 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.46944 * 5.00305 * 3 2 1 34 34 H 1.09000 * 109.47644 * 245.00249 * 3 2 1 35 35 H 1.09000 * 110.24137 * 44.20851 * 5 4 3 36 36 H 1.09005 * 110.23615 * 282.23740 * 5 4 3 37 37 H 1.08001 * 120.00272 * 0.02562 * 9 8 6 38 38 H 1.08001 * 119.99853 * 180.27554 * 10 9 8 39 39 H 1.07998 * 120.00382 * 179.83318 * 11 10 9 40 40 H 1.07997 * 119.99499 * 180.02562 * 12 11 10 41 41 H 1.08004 * 120.00288 * 359.97438 * 13 8 6 42 42 H 1.08991 * 111.01779 * 36.76221 * 15 14 6 43 43 H 1.09000 * 111.01325 * 272.87586 * 15 14 6 44 44 H 1.08998 * 110.34385 * 205.32050 * 16 15 14 45 45 H 1.09000 * 110.34838 * 83.06143 * 16 15 14 46 46 H 1.09006 * 109.47103 * 189.21679 * 18 17 16 47 47 H 1.09000 * 109.47447 * 309.21209 * 18 17 16 48 48 H 0.97005 * 120.00280 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.98101 * 117.50383 * 27 17 16 50 50 H 1.09007 * 109.97134 * 238.78289 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 4.3806 0.8504 1.0766 6 6 5.0798 1.4588 2.3160 7 1 5.5742 2.3972 2.0649 8 6 6.0547 0.4817 2.9210 9 6 5.7529 -0.8670 2.9506 10 6 6.6490 -1.7638 3.5016 11 6 7.8428 -1.3109 4.0314 12 6 8.1422 0.0384 4.0065 13 6 7.2480 0.9347 3.4515 14 6 3.8878 1.6975 3.2512 15 6 3.7445 0.5538 4.2707 16 6 3.0046 1.2662 5.4334 17 7 3.5553 2.6393 5.4517 18 6 2.5301 3.6123 5.8518 19 6 2.1915 3.4156 7.3070 20 1 2.6879 2.6445 7.8774 21 6 1.2480 4.2200 7.9102 22 7 0.6432 5.1586 7.2154 23 14 0.8279 3.9756 9.7138 24 1 1.7197 4.8200 10.5485 25 1 -0.5857 4.3646 9.9499 26 1 1.0156 2.5480 10.0768 27 6 4.0849 2.9505 4.1077 28 6 2.6877 1.8015 2.3577 29 8 1.6066 2.2411 2.6880 30 1 -0.5401 -0.9353 -0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 4.8641 1.1966 0.1632 36 1 4.4040 -0.2383 1.1271 37 1 4.8187 -1.2206 2.5398 38 1 6.4152 -2.8181 3.5208 39 1 8.5418 -2.0113 4.4643 40 1 9.0751 0.3922 4.4199 41 1 7.4820 1.9889 3.4320 42 1 4.7211 0.1921 4.5922 43 1 3.1427 -0.2590 3.8642 44 1 3.2101 0.7628 6.3781 45 1 1.9319 1.2905 5.2416 46 1 2.9096 4.6229 5.7004 47 1 1.6348 3.4662 5.2475 48 1 -0.0209 5.7243 7.6396 49 1 3.5359 3.7872 3.6756 50 1 5.1453 3.1943 4.1727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031199.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:09 Heat of formation + Delta-G solvation = 13.929122 kcal Electronic energy + Delta-G solvation = -30754.182893 eV Core-core repulsion = 26939.133566 eV Total energy + Delta-G solvation = -3815.049327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.68471 -39.96447 -38.95845 -37.64059 -36.08014 -34.87163 -33.47597 -31.98567 -31.72024 -30.59157 -29.24414 -28.23195 -27.27060 -25.11520 -24.53032 -23.26119 -23.15032 -21.77553 -21.39913 -20.71800 -20.09484 -18.54941 -18.01448 -17.55432 -17.26224 -16.73877 -16.50117 -16.23543 -16.00634 -15.84949 -15.54464 -15.31709 -14.96272 -14.71369 -14.66015 -14.41540 -14.23028 -14.04737 -13.89820 -13.60797 -13.55303 -13.28060 -13.07653 -13.02162 -12.71933 -12.65104 -12.47415 -12.29235 -12.23561 -12.15417 -11.89022 -11.84264 -11.72883 -11.62508 -11.26409 -10.86415 -10.63926 -10.36522 -9.77697 -9.63647 -9.43853 -9.09237 -8.21651 -6.33522 0.51713 0.64806 1.13414 1.36771 1.40660 1.43973 1.51595 2.12815 2.38557 2.91446 3.09873 3.13400 3.29209 3.41316 3.54077 3.81091 3.88554 3.96756 4.06773 4.09489 4.12952 4.26483 4.32664 4.34724 4.43977 4.44850 4.51598 4.59864 4.64389 4.67312 4.72678 4.79186 4.82595 4.87968 4.93316 4.94673 5.05800 5.09759 5.13766 5.23533 5.28265 5.29468 5.51499 5.59029 5.62234 5.70489 5.73679 5.77707 5.80268 5.99787 6.02206 6.23217 6.23446 6.52059 6.82755 7.11337 7.36236 8.90315 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008819 B = 0.004220 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.105399 B = 6634.191489 C = 8902.061258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.180 4.180 3 C 0.148 3.852 4 N -0.612 5.612 5 C 0.108 3.892 6 C -0.038 4.038 7 H 0.113 0.887 8 C -0.072 4.072 9 C -0.118 4.118 10 C -0.125 4.125 11 C -0.126 4.126 12 C -0.126 4.126 13 C -0.117 4.117 14 C -0.099 4.099 15 C -0.088 4.088 16 C 0.056 3.944 17 N -0.523 5.523 18 C 0.212 3.788 19 C -0.524 4.524 20 H 0.064 0.936 21 C -0.004 4.004 22 N -0.938 5.938 23 Si 0.976 3.024 24 H -0.267 1.267 25 H -0.282 1.282 26 H -0.263 1.263 27 C 0.066 3.934 28 C 0.519 3.481 29 O -0.569 6.569 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.130 0.870 33 H 0.059 0.941 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.006 0.994 46 H -0.006 1.006 47 H -0.046 1.046 48 H 0.264 0.736 49 H 0.020 0.980 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.448 -16.729 -17.752 28.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.199 4.199 3 C 0.027 3.973 4 N -0.345 5.345 5 C -0.014 4.014 6 C -0.057 4.057 7 H 0.131 0.869 8 C -0.072 4.072 9 C -0.135 4.135 10 C -0.143 4.143 11 C -0.144 4.144 12 C -0.144 4.144 13 C -0.135 4.135 14 C -0.103 4.103 15 C -0.126 4.126 16 C -0.072 4.072 17 N -0.247 5.247 18 C 0.085 3.915 19 C -0.562 4.562 20 H 0.082 0.918 21 C -0.201 4.201 22 N -0.579 5.579 23 Si 0.799 3.201 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.187 1.187 27 C -0.063 4.063 28 C 0.307 3.693 29 O -0.447 6.447 30 H 0.132 0.868 31 H 0.103 0.897 32 H 0.148 0.852 33 H 0.077 0.923 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.131 0.869 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.025 0.975 46 H 0.012 0.988 47 H -0.028 1.028 48 H 0.073 0.927 49 H 0.038 0.962 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.106 -16.308 -17.292 28.163 hybrid contribution -1.824 0.718 0.439 2.009 sum 13.282 -15.591 -16.854 26.524 Atomic orbital electron populations 1.24055 0.96453 1.02349 0.99016 1.23379 0.96258 0.99118 1.01136 1.20644 0.92019 0.95575 0.89078 1.48519 1.14319 1.61577 1.10071 1.22640 0.78865 1.00543 0.99312 1.20937 0.92142 0.99647 0.93008 0.86904 1.19301 0.94327 0.93591 1.00002 1.21194 0.99780 0.92504 1.00067 1.21359 0.94100 1.00448 0.98362 1.21451 0.97591 0.96041 0.99350 1.21376 1.00086 0.93658 0.99290 1.21205 0.93672 1.00452 0.98144 1.21651 0.94582 0.98223 0.95891 1.22722 1.02316 0.95109 0.92435 1.22888 0.95683 0.89581 0.99062 1.63797 1.34642 1.02528 1.23712 1.19453 0.87128 0.89891 0.95051 1.21458 1.21574 1.17451 0.95718 0.91820 1.26047 0.95654 0.94671 1.03740 1.70139 1.27657 1.21502 1.38589 0.85291 0.77346 0.79011 0.78404 1.19229 1.20748 1.18687 1.22644 1.00954 0.94676 0.87978 1.20774 0.88580 0.76112 0.83869 1.90771 1.28050 1.47539 1.78305 0.86787 0.89672 0.85240 0.92264 0.85715 0.86682 0.88573 0.85181 0.84361 0.84518 0.84759 0.85369 0.86855 0.90523 0.91028 0.97515 0.98772 1.02832 0.92739 0.96170 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.78 14.32 67.78 0.97 -2.81 16 2 C -0.18 -3.46 9.85 25.64 0.25 -3.21 16 3 C 0.15 3.01 6.38 85.63 0.55 3.55 16 4 N -0.61 -14.55 2.93 -822.51 -2.41 -16.97 16 5 C 0.11 1.63 6.82 86.90 0.59 2.22 16 6 C -0.04 -0.75 2.74 -10.81 -0.03 -0.77 16 7 H 0.11 1.96 7.83 -2.39 -0.02 1.94 16 8 C -0.07 -1.26 3.67 -19.87 -0.07 -1.34 16 9 C -0.12 -1.85 6.53 22.27 0.15 -1.70 16 10 C -0.12 -1.79 10.05 22.27 0.22 -1.56 16 11 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 12 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 13 C -0.12 -2.04 9.69 22.27 0.22 -1.83 16 14 C -0.10 -3.05 0.60 -52.71 -0.03 -3.08 16 15 C -0.09 -2.74 4.58 31.62 0.14 -2.59 16 16 C 0.06 2.46 6.09 86.83 0.53 2.99 16 17 N -0.52 -25.31 5.17 -891.04 -4.60 -29.91 16 18 C 0.21 12.85 4.33 85.55 0.37 13.22 16 19 C -0.52 -32.63 8.81 25.60 0.23 -32.40 16 20 H 0.06 3.84 7.77 -2.91 -0.02 3.82 16 21 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 22 N -0.94 -61.60 13.29 21.45 0.28 -61.32 16 23 Si 0.98 47.37 29.54 68.60 2.03 49.40 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 27 C 0.07 2.60 5.95 86.15 0.51 3.12 16 28 C 0.52 18.34 6.59 87.42 0.58 18.91 16 29 O -0.57 -27.56 17.47 -3.04 -0.05 -27.62 16 30 H 0.11 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.08 2.00 7.84 -2.91 -0.02 1.97 16 32 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.06 1.54 7.61 -2.38 -0.02 1.52 16 34 H 0.13 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 1.14 5.69 -2.38 -0.01 1.13 16 37 H 0.13 1.78 6.17 -2.91 -0.02 1.77 16 38 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 42 H 0.11 3.11 5.20 -2.39 -0.01 3.10 16 43 H 0.08 2.19 7.88 -2.39 -0.02 2.18 16 44 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 45 H 0.01 0.33 7.62 -2.39 -0.02 0.32 16 46 H -0.01 -0.38 8.04 -2.38 -0.02 -0.40 16 47 H -0.05 -3.20 7.85 -2.39 -0.02 -3.22 16 48 H 0.26 16.16 8.31 -92.70 -0.77 15.39 16 49 H 0.02 0.91 7.24 -2.39 -0.02 0.89 16 50 H 0.10 3.34 7.79 -2.38 -0.02 3.32 16 Total: -1.00 -85.13 397.83 2.24 -82.89 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.91 Total: 13.95 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 6.08 Total: -10.43 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -6.73 Total: -108.19 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.05 Total: -27.62 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -85.13 2.24 -82.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031199.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.820 kcal (2) G-P(sol) polarization free energy of solvation -85.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds