Wall clock time and date at job start Sat Apr 11 2020 06:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47204 * 2 1 4 4 H 1.09005 * 109.52083 * 54.91170 * 3 2 1 5 5 C 1.53193 * 109.49518 * 294.83885 * 3 2 1 6 6 N 1.46928 * 108.77407 * 185.41026 * 5 3 2 7 7 C 1.34774 * 120.63102 * 233.62875 * 6 5 3 8 8 O 1.21276 * 120.00179 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99811 * 180.02562 * 7 6 5 10 10 C 1.47207 * 109.47198 * 180.02562 * 9 7 6 11 11 C 8.11734 * 81.02251 * 345.15354 * 2 1 3 12 12 C 9.31803 * 75.88201 * 345.27272 * 2 1 3 13 13 C 1.39532 * 120.14458 * 135.20522 * 12 11 10 14 14 C 1.37969 * 119.85874 * 179.74360 * 13 12 11 15 15 C 1.38348 * 120.14153 * 0.55781 * 14 13 12 16 16 C 1.38345 * 120.28667 * 359.69637 * 15 14 13 17 17 C 1.37975 * 120.13930 * 0.02562 * 16 15 14 18 18 C 1.46921 * 118.73721 * 53.60956 * 6 5 3 19 19 C 1.53191 * 108.77509 * 306.39006 * 18 6 5 20 20 C 1.53033 * 109.31515 * 54.63639 * 19 18 6 21 21 H 1.08999 * 109.45340 * 178.61944 * 20 19 18 22 22 N 1.46500 * 109.46114 * 58.65337 * 20 19 18 23 23 C 1.36943 * 119.99878 * 84.93157 * 22 20 19 24 24 H 1.07996 * 119.99698 * 0.02562 * 23 22 20 25 25 C 1.38809 * 119.99902 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00319 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00011 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47297 * 59.99967 * 27 25 23 29 29 H 1.48503 * 109.47261 * 300.00148 * 27 25 23 30 30 H 1.48500 * 109.47454 * 180.02562 * 27 25 23 31 31 H 1.09000 * 109.47428 * 300.00277 * 1 2 3 32 32 H 1.08998 * 109.46886 * 60.00422 * 1 2 3 33 33 H 1.09004 * 109.46951 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47395 * 240.00259 * 2 1 3 35 35 H 1.08999 * 109.47265 * 119.99961 * 2 1 3 36 36 H 1.08995 * 109.58798 * 305.19841 * 5 3 2 37 37 H 1.09005 * 109.58592 * 65.48293 * 5 3 2 38 38 H 1.08996 * 109.47381 * 299.99735 * 9 7 6 39 39 H 1.08999 * 109.47275 * 60.00321 * 9 7 6 40 40 H 1.08002 * 120.07087 * 0.02562 * 13 12 11 41 41 H 1.08001 * 119.93433 * 180.25774 * 14 13 12 42 42 H 1.07997 * 119.86019 * 179.72333 * 15 14 13 43 43 H 1.08003 * 119.93313 * 180.02562 * 16 15 14 44 44 H 1.08000 * 120.06981 * 179.97438 * 17 16 15 45 45 H 1.08995 * 109.59159 * 66.17573 * 18 6 5 46 46 H 1.09001 * 109.58701 * 186.46124 * 18 6 5 47 47 H 1.08998 * 109.49826 * 294.68455 * 19 18 6 48 48 H 1.09007 * 109.49928 * 174.58679 * 19 18 6 49 49 H 0.97000 * 120.00415 * 264.93105 * 22 20 19 50 50 H 0.97001 * 119.99542 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 0.8407 5 6 1.6385 2.1268 -1.3105 6 7 2.2451 3.4644 -1.3507 7 6 1.4856 4.5565 -1.5673 8 8 0.2896 4.4406 -1.7318 9 6 2.1227 5.9217 -1.6063 10 6 1.0883 6.9390 -1.8552 11 6 0.2633 7.7502 -2.0544 12 6 -0.7428 8.7397 -2.2973 13 6 -1.7328 8.5123 -3.2539 14 6 -2.7025 9.4675 -3.4794 15 6 -2.6880 10.6536 -2.7675 16 6 -1.7062 10.8876 -1.8213 17 6 -0.7341 9.9380 -1.5823 18 6 3.6952 3.5888 -1.1499 19 6 4.0736 2.8882 0.1588 20 6 3.5652 1.4452 0.1258 21 1 3.8546 0.9372 1.0457 22 7 4.1507 0.7476 -1.0218 23 6 5.3886 0.1719 -0.9144 24 1 5.9330 0.2318 0.0164 25 6 5.9431 -0.4895 -2.0015 26 7 5.2794 -0.5629 -3.1357 27 14 7.6314 -1.2753 -1.8548 28 1 7.6075 -2.3035 -0.7835 29 1 8.6349 -0.2335 -1.5187 30 1 7.9943 -1.9133 -3.1457 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.9965 1.5377 -2.1549 37 1 0.5531 2.2138 -1.3597 38 1 2.6079 6.1236 -0.6514 39 1 2.8641 5.9540 -2.4046 40 1 -1.7426 7.5886 -3.8135 41 1 -3.4718 9.2910 -4.2166 42 1 -3.4467 11.4001 -2.9508 43 1 -1.7006 11.8154 -1.2685 44 1 0.0320 10.1220 -0.8437 45 1 4.2209 3.1190 -1.9810 46 1 3.9673 4.6429 -1.0944 47 1 3.6192 3.4148 0.9980 48 1 5.1577 2.8895 0.2719 49 1 3.6616 0.6935 -1.8577 50 1 4.4025 -0.1551 -3.2118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276771370.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:32 Heat of formation + Delta-G solvation = 41.302857 kcal Electronic energy + Delta-G solvation = -28620.334154 eV Core-core repulsion = 24806.471842 eV Total energy + Delta-G solvation = -3813.862313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.21964 -39.36225 -38.02520 -34.61287 -34.47941 -33.97581 -31.89268 -31.73158 -31.23684 -29.52171 -28.95936 -27.86160 -24.87787 -23.88096 -23.46868 -23.09247 -22.77558 -20.95622 -20.02077 -18.61715 -18.19320 -17.41978 -17.08227 -16.48317 -15.89303 -15.67546 -15.25466 -15.02544 -14.82658 -14.45557 -14.02289 -13.88617 -13.72963 -13.70653 -13.48101 -13.43288 -13.37547 -13.14390 -12.94796 -12.51817 -12.29562 -11.82432 -11.71150 -11.60332 -11.53048 -11.23909 -11.02128 -10.98565 -10.74711 -10.61075 -10.36500 -10.27401 -10.25619 -10.02115 -9.90018 -9.61570 -9.26084 -9.19063 -8.96262 -8.65742 -8.35105 -7.07866 -6.13439 -3.14160 0.68665 1.10186 2.41276 2.64342 2.78280 3.24765 3.48585 3.51149 3.68985 3.77428 3.90200 4.60583 4.63199 4.66093 4.68408 4.80140 4.98811 5.07321 5.12129 5.16428 5.21188 5.22003 5.27898 5.30577 5.38655 5.43072 5.57714 5.60453 5.66849 5.69477 5.72965 5.76849 5.81326 5.93541 6.05014 6.07744 6.13001 6.18851 6.22955 6.24902 6.27704 6.31448 6.45923 6.52050 6.57654 6.65075 6.66508 6.80427 6.89282 7.41591 7.59730 7.77175 8.25898 8.71023 9.17394 10.03908 10.19333 11.34040 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.002084 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.367746 B =13435.240148 C =14164.651534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.105 4.105 4 H 0.068 0.932 5 C 0.120 3.880 6 N -0.601 5.601 7 C 0.516 3.484 8 O -0.543 6.543 9 C -0.026 4.026 10 C -0.128 4.128 11 C -0.140 4.140 12 C 0.025 3.975 13 C -0.095 4.095 14 C -0.119 4.119 15 C -0.116 4.116 16 C -0.121 4.121 17 C -0.100 4.100 18 C 0.111 3.889 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.052 0.948 22 N -0.729 5.729 23 C -0.328 4.328 24 H 0.064 0.936 25 C -0.044 4.044 26 N -0.943 5.943 27 Si 1.077 2.923 28 H -0.296 1.296 29 H -0.296 1.296 30 H -0.286 1.286 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.076 0.924 49 H 0.367 0.633 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.335 18.650 4.278 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.125 4.125 4 H 0.086 0.914 5 C -0.002 4.002 6 N -0.334 5.334 7 C 0.303 3.697 8 O -0.421 6.421 9 C -0.065 4.065 10 C -0.128 4.128 11 C -0.140 4.140 12 C 0.025 3.975 13 C -0.113 4.113 14 C -0.137 4.137 15 C -0.134 4.134 16 C -0.139 4.139 17 C -0.118 4.118 18 C -0.011 4.011 19 C -0.191 4.191 20 C 0.073 3.927 21 H 0.070 0.930 22 N -0.373 5.373 23 C -0.459 4.459 24 H 0.082 0.918 25 C -0.242 4.242 26 N -0.588 5.588 27 Si 0.909 3.091 28 H -0.224 1.224 29 H -0.224 1.224 30 H -0.212 1.212 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.201 0.799 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.655 17.688 3.555 20.953 hybrid contribution -1.048 0.833 0.702 1.512 sum -11.703 18.521 4.256 22.318 Atomic orbital electron populations 1.21856 0.96661 1.01139 1.01431 1.21404 0.94402 0.95667 1.03220 1.21782 0.97436 0.96176 0.97092 0.91388 1.21664 0.98950 0.81501 0.98088 1.48114 1.08747 1.06448 1.70059 1.20206 0.86949 0.85567 0.77005 1.90697 1.14872 1.86453 1.50034 1.18696 0.94522 0.88100 1.05194 1.21258 0.96703 0.95494 0.99360 1.18967 0.95686 0.97248 1.02144 1.15893 0.92764 0.91453 0.97373 1.21307 0.93624 0.99562 0.96797 1.21108 0.98675 0.93853 1.00070 1.21267 0.98604 0.97328 0.96246 1.21076 0.94985 0.99261 0.98545 1.21241 0.98921 0.92588 0.99048 1.21781 0.78974 1.00228 1.00131 1.22513 1.01983 0.99215 0.95390 1.20151 0.89507 0.90596 0.92400 0.93006 1.42477 1.19405 1.65174 1.10255 1.20003 0.94649 1.31651 0.99633 0.91846 1.25691 1.05572 1.00147 0.92752 1.70905 1.14430 1.47605 1.25854 0.83268 0.74616 0.75880 0.75373 1.22383 1.22369 1.21167 0.93267 0.92795 0.93059 0.90901 0.91910 0.91209 0.89433 0.86383 0.86270 0.85415 0.85520 0.85824 0.85594 0.85637 0.89820 0.90942 0.93129 0.90558 0.79874 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.11 -1.72 5.19 -26.73 -0.14 -1.86 16 3 C -0.10 -1.67 2.14 -90.50 -0.19 -1.86 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 5 C 0.12 1.97 5.03 -3.71 -0.02 1.96 16 6 N -0.60 -9.25 2.97 -172.77 -0.51 -9.76 16 7 C 0.52 8.04 7.68 -10.99 -0.08 7.95 16 8 O -0.54 -10.42 15.44 5.56 0.09 -10.33 16 9 C -0.03 -0.31 4.53 -30.67 -0.14 -0.45 16 10 C -0.13 -1.78 12.58 -37.12 -0.47 -2.25 16 11 C -0.14 -1.97 13.24 -38.84 -0.51 -2.49 16 12 C 0.03 0.31 5.72 -107.01 -0.61 -0.31 16 13 C -0.09 -1.04 9.75 -39.20 -0.38 -1.43 16 14 C -0.12 -1.03 10.03 -39.64 -0.40 -1.43 16 15 C -0.12 -0.90 10.04 -39.50 -0.40 -1.30 16 16 C -0.12 -0.97 10.03 -39.64 -0.40 -1.37 16 17 C -0.10 -0.99 9.75 -39.19 -0.38 -1.37 16 18 C 0.11 1.62 6.08 -3.71 -0.02 1.60 16 19 C -0.15 -2.33 5.78 -26.62 -0.15 -2.49 16 20 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 21 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 22 N -0.73 -16.24 3.72 -53.39 -0.20 -16.44 16 23 C -0.33 -8.47 9.93 -15.06 -0.15 -8.62 16 24 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 25 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 26 N -0.94 -27.78 13.70 55.49 0.76 -27.02 16 27 Si 1.08 24.91 29.92 -169.99 -5.09 19.82 16 28 H -0.30 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.30 -6.54 7.11 56.52 0.40 -6.14 16 30 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.33 7.70 -51.93 -0.40 0.93 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.26 6.64 -51.93 -0.34 0.91 16 37 H 0.09 1.48 5.73 -51.93 -0.30 1.18 16 38 H 0.12 1.09 7.69 -51.93 -0.40 0.69 16 39 H 0.12 1.16 7.94 -51.93 -0.41 0.75 16 40 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 44 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 45 H 0.08 1.45 7.74 -51.93 -0.40 1.05 16 46 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.37 8.59 4.77 -40.82 -0.19 8.39 16 50 H 0.25 7.37 6.77 -40.82 -0.28 7.09 16 LS Contribution 404.95 15.07 6.10 6.10 Total: -1.00 -32.25 404.95 -10.87 -43.12 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.66 Total: 10.10 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -4.36 Total: -15.59 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.05 Total: -53.22 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.09 Total: 19.82 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.25 -10.87 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276771370.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.424 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds