Wall clock time and date at job start Sat Apr 11 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47165 * 2 1 4 4 H 1.08999 * 109.49743 * 305.06177 * 3 2 1 5 5 C 1.53618 * 109.45667 * 65.27498 * 3 2 1 6 6 N 1.46928 * 108.54134 * 174.74170 * 5 3 2 7 7 C 1.34780 * 120.63321 * 126.36939 * 6 5 3 8 8 O 1.21281 * 119.99545 * 359.71604 * 7 6 5 9 9 C 1.50692 * 119.99903 * 179.71832 * 7 6 5 10 10 C 1.47203 * 109.46900 * 179.97438 * 9 7 6 11 11 C 8.11784 * 81.02706 * 14.84111 * 2 1 3 12 12 C 9.31866 * 75.88692 * 14.72473 * 2 1 3 13 13 C 1.39535 * 120.13986 * 131.51491 * 12 11 10 14 14 C 1.37972 * 119.85845 * 179.97438 * 13 12 11 15 15 C 1.38346 * 120.13996 * 359.97438 * 14 13 12 16 16 C 1.38346 * 120.28578 * 0.02562 * 15 14 13 17 17 C 1.37972 * 120.14050 * 359.97438 * 16 15 14 18 18 C 1.46928 * 118.73822 * 306.08969 * 6 5 3 19 19 C 1.53192 * 108.77523 * 53.85986 * 18 6 5 20 20 C 1.53038 * 109.31460 * 305.36793 * 19 18 6 21 21 H 1.09001 * 109.46150 * 301.34754 * 20 19 18 22 22 N 1.46500 * 109.46251 * 181.36765 * 20 19 18 23 23 C 1.36937 * 119.99631 * 84.99863 * 22 20 19 24 24 H 1.08004 * 120.00254 * 0.02562 * 23 22 20 25 25 C 1.38815 * 119.99705 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99920 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 120.00304 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47192 * 89.99782 * 27 25 23 29 29 H 1.48500 * 109.47472 * 210.00000 * 27 25 23 30 30 H 1.48499 * 109.47011 * 330.00076 * 27 25 23 31 31 H 1.09002 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46918 * 300.00110 * 1 2 3 33 33 H 1.09011 * 109.46887 * 59.99793 * 1 2 3 34 34 H 1.08999 * 109.46918 * 239.99890 * 2 1 3 35 35 H 1.09002 * 109.46979 * 120.00434 * 2 1 3 36 36 H 1.09002 * 109.74304 * 55.00089 * 5 3 2 37 37 H 1.09001 * 109.66490 * 294.42750 * 5 3 2 38 38 H 1.08999 * 109.47631 * 60.00080 * 9 7 6 39 39 H 1.08996 * 109.47410 * 299.99626 * 9 7 6 40 40 H 1.08007 * 120.07409 * 359.69681 * 13 12 11 41 41 H 1.08000 * 119.92892 * 180.02562 * 14 13 12 42 42 H 1.08003 * 119.85471 * 179.97438 * 15 14 13 43 43 H 1.08002 * 119.92423 * 179.97438 * 16 15 14 44 44 H 1.08003 * 120.06564 * 180.02562 * 17 16 15 45 45 H 1.08994 * 109.58902 * 173.65207 * 18 6 5 46 46 H 1.09007 * 109.58352 * 294.07882 * 18 6 5 47 47 H 1.09001 * 109.49142 * 65.31604 * 19 18 6 48 48 H 1.08993 * 109.49793 * 185.38152 * 19 18 6 49 49 H 0.96996 * 120.00445 * 265.00142 * 22 20 19 50 50 H 0.96998 * 120.00091 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9822 -0.8410 5 6 1.6394 2.1269 1.3157 6 7 2.2451 3.4651 1.3495 7 6 1.4858 4.5573 1.5664 8 8 0.2898 4.4413 1.7308 9 6 2.1229 5.9224 1.6046 10 6 1.0886 6.9397 1.8540 11 6 0.2639 7.7510 2.0539 12 6 -0.7422 8.7406 2.2971 13 6 -1.9047 8.7621 1.5257 14 6 -2.8705 9.7178 1.7653 15 6 -2.6885 10.6531 2.7684 16 6 -1.5381 10.6372 3.5368 17 6 -0.5647 9.6867 3.3072 18 6 3.6953 3.5894 1.1486 19 6 4.0737 2.8880 -0.1597 20 6 3.5653 1.4450 -0.1258 21 1 4.0009 0.9265 0.7284 22 7 3.9540 0.7614 -1.3618 23 6 5.1915 0.1844 -1.4651 24 1 5.8810 0.2330 -0.6351 25 6 5.5600 -0.4629 -2.6365 26 7 6.7493 -1.0179 -2.7356 27 14 4.3679 -0.5463 -4.0722 28 1 4.5705 0.6322 -4.9529 29 1 4.6111 -1.7902 -4.8460 30 1 2.9744 -0.5470 -3.5591 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.0009 1.5407 2.1606 37 1 0.5543 2.2156 1.3674 38 1 2.6074 6.1241 0.6493 39 1 2.8648 5.9549 2.4023 40 1 -2.0462 8.0351 0.7396 41 1 -3.7709 9.7353 1.1692 42 1 -3.4473 11.3994 2.9518 43 1 -1.4019 11.3703 4.3180 44 1 0.3326 9.6751 3.9080 45 1 3.9670 4.6433 1.0901 46 1 4.2209 3.1200 1.9802 47 1 3.6193 3.4142 -0.9991 48 1 5.1578 2.8898 -0.2730 49 1 3.3347 0.7174 -2.1071 50 1 7.0069 -1.4699 -3.5543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276771372.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:40 Heat of formation + Delta-G solvation = 42.653097 kcal Electronic energy + Delta-G solvation = -28256.863878 eV Core-core repulsion = 24443.060116 eV Total energy + Delta-G solvation = -3813.803762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.29575 -39.41278 -38.01381 -34.91000 -34.56715 -33.89983 -31.92142 -31.77494 -31.28610 -29.94703 -29.44952 -28.10119 -25.09871 -24.01524 -23.21449 -22.82631 -22.47750 -20.87984 -20.21193 -19.35402 -18.31385 -17.64442 -17.17419 -16.56921 -16.00767 -15.73520 -15.29425 -14.98235 -14.89492 -14.41058 -14.07209 -13.94309 -13.78935 -13.77475 -13.66647 -13.38789 -13.28460 -13.25364 -12.74426 -12.63176 -12.37742 -12.00726 -11.85517 -11.76490 -11.58979 -11.44621 -11.12118 -11.07007 -11.04001 -10.82674 -10.44933 -10.35750 -10.31545 -10.23990 -9.81024 -9.75935 -9.61565 -9.30894 -8.96804 -8.72194 -8.58418 -7.31654 -5.81897 -3.17419 0.63127 1.05383 2.33353 2.54152 2.66292 3.09951 3.33643 3.37059 3.42527 3.71337 3.82360 4.48789 4.54679 4.61514 4.62264 4.75115 4.87892 4.97724 5.00192 5.06125 5.10298 5.13226 5.17528 5.21653 5.24939 5.32698 5.45182 5.49399 5.55763 5.56507 5.67970 5.70836 5.76562 5.89022 5.98134 5.99909 6.05730 6.07935 6.14206 6.19224 6.21172 6.24956 6.31056 6.41699 6.51628 6.60095 6.67774 6.76424 6.90576 7.30668 7.44012 7.93557 8.11145 8.37201 9.15403 9.88282 10.08074 11.36278 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018670 B = 0.001968 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.344336 B =14221.273965 C =14533.151028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.606 5.606 7 C 0.517 3.483 8 O -0.539 6.539 9 C -0.026 4.026 10 C -0.131 4.131 11 C -0.137 4.137 12 C 0.024 3.976 13 C -0.095 4.095 14 C -0.119 4.119 15 C -0.116 4.116 16 C -0.121 4.121 17 C -0.099 4.099 18 C 0.104 3.896 19 C -0.153 4.153 20 C 0.188 3.812 21 H 0.057 0.943 22 N -0.745 5.745 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.882 3.118 28 H -0.285 1.285 29 H -0.292 1.292 30 H -0.277 1.277 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.082 0.918 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.634 19.830 12.200 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.339 5.339 7 C 0.304 3.696 8 O -0.416 6.416 9 C -0.065 4.065 10 C -0.132 4.132 11 C -0.137 4.137 12 C 0.024 3.976 13 C -0.113 4.113 14 C -0.137 4.137 15 C -0.134 4.134 16 C -0.138 4.138 17 C -0.117 4.117 18 C -0.019 4.019 19 C -0.194 4.194 20 C 0.078 3.922 21 H 0.075 0.925 22 N -0.387 5.387 23 C -0.372 4.372 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.580 5.580 27 Si 0.712 3.288 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.101 0.899 49 H 0.194 0.806 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.019 19.643 12.320 27.626 hybrid contribution -0.523 -0.157 -1.260 1.373 sum -15.542 19.486 11.061 27.269 Atomic orbital electron populations 1.21856 0.96649 1.01176 1.01433 1.21468 0.94541 0.95707 1.03445 1.21913 0.97603 0.96296 0.96999 0.91256 1.21826 0.99538 0.81276 0.97584 1.48166 1.08683 1.06611 1.70488 1.20243 0.86970 0.85582 0.76781 1.90713 1.14839 1.86404 1.49655 1.18693 0.94511 0.87983 1.05307 1.21225 0.96844 0.95586 0.99527 1.18982 0.95580 0.97133 1.02000 1.15892 0.91678 0.93091 0.96980 1.21297 0.92618 0.98449 0.98924 1.21110 0.99131 0.95172 0.98302 1.21276 0.97631 0.98774 0.95686 1.21083 0.94016 0.98780 0.99972 1.21237 0.99474 0.94236 0.96772 1.21939 0.79186 1.01356 0.99433 1.22656 1.02733 0.98808 0.95186 1.20164 0.90680 0.90678 0.90678 0.92471 1.42774 1.16512 1.66249 1.13121 1.19044 0.90426 1.27353 1.00422 0.89184 1.24657 0.96412 1.00233 0.97692 1.69694 1.19334 1.41502 1.27513 0.86599 0.81147 0.77332 0.83706 1.21185 1.21797 1.20290 0.93039 0.92943 0.93114 0.90418 0.91924 0.91337 0.89068 0.86168 0.86311 0.85459 0.85508 0.85797 0.85562 0.85612 0.90221 0.90940 0.92201 0.89910 0.80608 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.68 37.16 0.36 -1.63 16 2 C -0.11 -1.69 5.31 -26.73 -0.14 -1.84 16 3 C -0.11 -1.62 1.93 -90.27 -0.17 -1.79 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 5 C 0.12 1.61 5.36 -3.49 -0.02 1.59 16 6 N -0.61 -7.65 2.97 -172.50 -0.51 -8.16 16 7 C 0.52 6.96 7.68 -10.99 -0.08 6.88 16 8 O -0.54 -9.37 15.44 5.56 0.09 -9.28 16 9 C -0.03 -0.26 4.53 -30.67 -0.14 -0.40 16 10 C -0.13 -1.66 12.58 -37.12 -0.47 -2.13 16 11 C -0.14 -1.78 13.24 -38.84 -0.51 -2.29 16 12 C 0.02 0.27 5.72 -107.01 -0.61 -0.35 16 13 C -0.09 -0.97 9.75 -39.20 -0.38 -1.35 16 14 C -0.12 -0.96 10.03 -39.64 -0.40 -1.36 16 15 C -0.12 -0.83 10.04 -39.50 -0.40 -1.23 16 16 C -0.12 -0.90 10.03 -39.64 -0.40 -1.30 16 17 C -0.10 -0.91 9.75 -39.20 -0.38 -1.30 16 18 C 0.10 1.14 6.34 -3.71 -0.02 1.12 16 19 C -0.15 -2.25 5.66 -26.61 -0.15 -2.40 16 20 C 0.19 3.23 2.19 -67.89 -0.15 3.08 16 21 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 22 N -0.74 -16.23 4.13 -53.38 -0.22 -16.45 16 23 C -0.24 -6.41 10.41 -15.06 -0.16 -6.57 16 24 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -28.40 13.97 55.49 0.78 -27.62 16 27 Si 0.88 21.53 27.74 -169.99 -4.71 16.82 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 33 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.08 1.36 7.21 -51.93 -0.37 0.99 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.31 5.74 -51.93 -0.30 1.01 16 38 H 0.12 0.96 7.69 -51.93 -0.40 0.56 16 39 H 0.12 0.85 7.94 -51.93 -0.41 0.44 16 40 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 43 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 44 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 45 H 0.08 0.65 5.93 -51.93 -0.31 0.34 16 46 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 49 H 0.36 7.96 5.37 -40.82 -0.22 7.74 16 50 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 407.19 15.07 6.14 6.14 Total: -1.00 -33.41 407.19 -10.64 -44.05 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.87 Total: 7.68 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -4.32 Total: -13.16 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.04 Total: -52.24 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.82 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.41 -10.64 -44.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276771372.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.705 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds