Wall clock time and date at job start Sat Apr 11 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47165 * 2 1 4 4 H 1.08999 * 109.49743 * 305.06177 * 3 2 1 5 5 C 1.53618 * 109.45667 * 65.27498 * 3 2 1 6 6 N 1.46928 * 108.54134 * 174.74170 * 5 3 2 7 7 C 1.34780 * 120.63321 * 126.36939 * 6 5 3 8 8 O 1.21281 * 119.99545 * 359.71604 * 7 6 5 9 9 C 1.50692 * 119.99903 * 179.71832 * 7 6 5 10 10 C 1.47203 * 109.46900 * 179.97438 * 9 7 6 11 11 C 8.11784 * 81.02706 * 14.84111 * 2 1 3 12 12 C 9.31866 * 75.88692 * 14.72473 * 2 1 3 13 13 C 1.39535 * 120.13986 * 131.51491 * 12 11 10 14 14 C 1.37972 * 119.85845 * 179.97438 * 13 12 11 15 15 C 1.38346 * 120.13996 * 359.97438 * 14 13 12 16 16 C 1.38346 * 120.28578 * 0.02562 * 15 14 13 17 17 C 1.37972 * 120.14050 * 359.97438 * 16 15 14 18 18 C 1.46928 * 118.73822 * 306.08969 * 6 5 3 19 19 C 1.53192 * 108.77523 * 53.85986 * 18 6 5 20 20 C 1.53038 * 109.31460 * 305.36793 * 19 18 6 21 21 H 1.09001 * 109.46150 * 301.34754 * 20 19 18 22 22 N 1.46500 * 109.46251 * 181.36765 * 20 19 18 23 23 C 1.36937 * 119.99631 * 84.99863 * 22 20 19 24 24 H 1.08004 * 120.00254 * 0.02562 * 23 22 20 25 25 C 1.38815 * 119.99705 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99920 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 120.00304 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47192 * 89.99782 * 27 25 23 29 29 H 1.48500 * 109.47472 * 210.00000 * 27 25 23 30 30 H 1.48499 * 109.47011 * 330.00076 * 27 25 23 31 31 H 1.09002 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46918 * 300.00110 * 1 2 3 33 33 H 1.09011 * 109.46887 * 59.99793 * 1 2 3 34 34 H 1.08999 * 109.46918 * 239.99890 * 2 1 3 35 35 H 1.09002 * 109.46979 * 120.00434 * 2 1 3 36 36 H 1.09002 * 109.74304 * 55.00089 * 5 3 2 37 37 H 1.09001 * 109.66490 * 294.42750 * 5 3 2 38 38 H 1.08999 * 109.47631 * 60.00080 * 9 7 6 39 39 H 1.08996 * 109.47410 * 299.99626 * 9 7 6 40 40 H 1.08007 * 120.07409 * 359.69681 * 13 12 11 41 41 H 1.08000 * 119.92892 * 180.02562 * 14 13 12 42 42 H 1.08003 * 119.85471 * 179.97438 * 15 14 13 43 43 H 1.08002 * 119.92423 * 179.97438 * 16 15 14 44 44 H 1.08003 * 120.06564 * 180.02562 * 17 16 15 45 45 H 1.08994 * 109.58902 * 173.65207 * 18 6 5 46 46 H 1.09007 * 109.58352 * 294.07882 * 18 6 5 47 47 H 1.09001 * 109.49142 * 65.31604 * 19 18 6 48 48 H 1.08993 * 109.49793 * 185.38152 * 19 18 6 49 49 H 0.96996 * 120.00445 * 265.00142 * 22 20 19 50 50 H 0.96998 * 120.00091 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9822 -0.8410 5 6 1.6394 2.1269 1.3157 6 7 2.2451 3.4651 1.3495 7 6 1.4858 4.5573 1.5664 8 8 0.2898 4.4413 1.7308 9 6 2.1229 5.9224 1.6046 10 6 1.0886 6.9397 1.8540 11 6 0.2639 7.7510 2.0539 12 6 -0.7422 8.7406 2.2971 13 6 -1.9047 8.7621 1.5257 14 6 -2.8705 9.7178 1.7653 15 6 -2.6885 10.6531 2.7684 16 6 -1.5381 10.6372 3.5368 17 6 -0.5647 9.6867 3.3072 18 6 3.6953 3.5894 1.1486 19 6 4.0737 2.8880 -0.1597 20 6 3.5653 1.4450 -0.1258 21 1 4.0009 0.9265 0.7284 22 7 3.9540 0.7614 -1.3618 23 6 5.1915 0.1844 -1.4651 24 1 5.8810 0.2330 -0.6351 25 6 5.5600 -0.4629 -2.6365 26 7 6.7493 -1.0179 -2.7356 27 14 4.3679 -0.5463 -4.0722 28 1 4.5705 0.6322 -4.9529 29 1 4.6111 -1.7902 -4.8460 30 1 2.9744 -0.5470 -3.5591 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.0009 1.5407 2.1606 37 1 0.5543 2.2156 1.3674 38 1 2.6074 6.1241 0.6493 39 1 2.8648 5.9549 2.4023 40 1 -2.0462 8.0351 0.7396 41 1 -3.7709 9.7353 1.1692 42 1 -3.4473 11.3994 2.9518 43 1 -1.4019 11.3703 4.3180 44 1 0.3326 9.6751 3.9080 45 1 3.9670 4.6433 1.0901 46 1 4.2209 3.1200 1.9802 47 1 3.6193 3.4142 -0.9991 48 1 5.1578 2.8898 -0.2730 49 1 3.3347 0.7174 -2.1071 50 1 7.0069 -1.4699 -3.5543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276771372.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:39 Heat of formation + Delta-G solvation = 24.850104 kcal Electronic energy + Delta-G solvation = -28257.635874 eV Core-core repulsion = 24443.060116 eV Total energy + Delta-G solvation = -3814.575758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.39137 -40.04845 -39.27104 -36.29872 -35.52732 -35.21121 -33.60088 -32.63748 -31.90767 -31.48248 -30.44758 -29.10623 -26.52619 -25.17561 -24.23989 -23.75914 -23.44977 -22.19774 -21.45068 -20.54018 -19.45247 -19.04909 -18.26339 -17.38432 -16.86169 -16.76460 -16.65027 -16.06124 -15.94931 -15.73315 -15.22200 -15.13103 -14.79952 -14.69244 -14.59673 -14.47026 -14.37603 -14.27396 -14.09173 -13.91566 -13.61854 -13.26302 -13.09472 -12.90082 -12.67281 -12.57683 -12.35452 -12.22940 -12.14520 -12.01330 -11.92006 -11.84887 -11.63877 -11.57274 -11.19676 -11.12576 -10.94503 -10.74694 -9.94175 -9.69440 -9.43314 -9.24779 -7.98877 -5.30106 -0.07242 0.42251 1.38436 1.39121 1.41839 1.46587 1.55817 1.79999 2.18264 2.49747 2.97980 3.04470 3.33144 3.51464 3.59467 3.77990 3.97146 4.01518 4.02477 4.04164 4.19287 4.24620 4.28841 4.33042 4.40842 4.42213 4.46542 4.47118 4.54064 4.61230 4.63015 4.70442 4.79421 4.84244 4.89107 4.99344 5.03965 5.06132 5.08135 5.16341 5.24757 5.34328 5.44697 5.46105 5.51687 5.52078 5.53674 5.64541 5.82248 5.99838 6.25434 6.33571 6.52466 7.08936 7.11665 7.89110 8.06792 9.22555 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018670 B = 0.001968 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.344336 B =14221.273965 C =14533.151028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.096 4.096 4 H 0.060 0.940 5 C 0.125 3.875 6 N -0.604 5.604 7 C 0.515 3.485 8 O -0.584 6.584 9 C -0.021 4.021 10 C -0.151 4.151 11 C -0.159 4.159 12 C -0.011 4.011 13 C -0.115 4.115 14 C -0.122 4.122 15 C -0.112 4.112 16 C -0.120 4.120 17 C -0.108 4.108 18 C 0.110 3.890 19 C -0.146 4.146 20 C 0.180 3.820 21 H 0.050 0.950 22 N -0.748 5.748 23 C -0.215 4.215 24 H 0.064 0.936 25 C -0.063 4.063 26 N -0.983 5.983 27 Si 0.944 3.056 28 H -0.283 1.283 29 H -0.301 1.301 30 H -0.256 1.256 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.118 0.882 41 H 0.148 0.852 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.134 0.866 45 H 0.119 0.881 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.068 0.932 49 H 0.361 0.639 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.297 22.359 13.448 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.116 4.116 4 H 0.079 0.921 5 C 0.002 3.998 6 N -0.336 5.336 7 C 0.305 3.695 8 O -0.464 6.464 9 C -0.059 4.059 10 C -0.152 4.152 11 C -0.159 4.159 12 C -0.011 4.011 13 C -0.133 4.133 14 C -0.140 4.140 15 C -0.129 4.129 16 C -0.137 4.137 17 C -0.126 4.126 18 C -0.012 4.012 19 C -0.187 4.187 20 C 0.072 3.928 21 H 0.068 0.932 22 N -0.390 5.390 23 C -0.346 4.346 24 H 0.082 0.918 25 C -0.254 4.254 26 N -0.635 5.635 27 Si 0.773 3.227 28 H -0.209 1.209 29 H -0.228 1.228 30 H -0.181 1.181 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.164 0.836 39 H 0.173 0.827 40 H 0.136 0.864 41 H 0.166 0.834 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.152 0.848 45 H 0.137 0.863 46 H 0.106 0.894 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.194 0.806 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.709 22.212 13.604 30.945 hybrid contribution -0.048 -0.877 -1.526 1.760 sum -16.757 21.335 12.078 29.696 Atomic orbital electron populations 1.21795 0.94922 1.01975 1.01782 1.21426 0.96065 0.95345 1.02233 1.21767 0.95582 0.96528 0.97744 0.92118 1.21708 0.99298 0.81963 0.96827 1.48209 1.09275 1.06140 1.69975 1.20820 0.86425 0.86704 0.75574 1.90698 1.16918 1.87101 1.51711 1.18879 0.94228 0.84865 1.07944 1.21879 0.97538 0.96190 0.99575 1.19678 0.95989 0.97774 1.02499 1.16191 0.92134 0.94116 0.98654 1.21395 0.93334 0.99399 0.99200 1.21409 0.99232 0.94603 0.98774 1.21698 0.98063 0.98634 0.94555 1.21467 0.93424 0.98509 1.00337 1.21446 1.00474 0.94260 0.96384 1.22034 0.78121 1.03522 0.97557 1.22469 1.01625 0.97081 0.97492 1.20433 0.92339 0.91711 0.88307 0.93223 1.42803 1.14862 1.66531 1.14787 1.19012 0.91271 1.25333 0.98955 0.91831 1.25355 0.98101 1.01250 1.00681 1.69859 1.21652 1.43795 1.28159 0.85566 0.80116 0.76672 0.80336 1.20947 1.22810 1.18051 0.92056 0.91968 0.93368 0.93145 0.91564 0.90074 0.89768 0.83610 0.82716 0.86399 0.83404 0.82721 0.82714 0.84774 0.86261 0.89398 0.92534 0.91298 0.80591 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.68 71.98 0.70 -2.91 16 2 C -0.11 -3.26 5.31 30.60 0.16 -3.10 16 3 C -0.10 -2.77 1.93 -10.57 -0.02 -2.79 16 4 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 5 C 0.12 3.15 5.36 86.51 0.46 3.61 16 6 N -0.60 -13.77 2.97 -818.07 -2.43 -16.20 16 7 C 0.52 12.88 7.68 87.65 0.67 13.55 16 8 O -0.58 -19.97 15.44 -3.03 -0.05 -20.02 16 9 C -0.02 -0.36 4.53 28.04 0.13 -0.24 16 10 C -0.15 -3.70 12.58 31.13 0.39 -3.31 16 11 C -0.16 -4.18 13.24 30.02 0.40 -3.78 16 12 C -0.01 -0.25 5.72 -21.41 -0.12 -0.37 16 13 C -0.12 -2.38 9.75 22.52 0.22 -2.16 16 14 C -0.12 -1.80 10.03 22.23 0.22 -1.58 16 15 C -0.11 -1.31 10.04 22.32 0.22 -1.08 16 16 C -0.12 -1.51 10.03 22.23 0.22 -1.28 16 17 C -0.11 -1.89 9.75 22.52 0.22 -1.67 16 18 C 0.11 2.05 6.34 86.36 0.55 2.60 16 19 C -0.15 -4.04 5.66 30.67 0.17 -3.87 16 20 C 0.18 6.03 2.19 45.02 0.10 6.13 16 21 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 22 N -0.75 -32.37 4.13 -322.80 -1.33 -33.71 16 23 C -0.21 -11.49 10.41 84.03 0.87 -10.62 16 24 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 25 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 26 N -0.98 -61.63 13.97 21.65 0.30 -61.32 16 27 Si 0.94 45.01 27.74 68.60 1.90 46.92 16 28 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 29 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 30 H -0.26 -11.12 6.52 99.48 0.65 -10.47 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.40 6.70 -2.39 -0.02 1.39 16 33 H 0.05 1.19 8.14 -2.38 -0.02 1.18 16 34 H 0.05 1.74 7.21 -2.39 -0.02 1.72 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.08 2.31 5.74 -2.39 -0.01 2.30 16 38 H 0.15 1.78 7.69 -2.39 -0.02 1.76 16 39 H 0.16 1.54 7.94 -2.39 -0.02 1.52 16 40 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 43 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 45 H 0.12 1.36 5.93 -2.39 -0.01 1.35 16 46 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.36 15.64 5.37 -92.71 -0.50 15.14 16 50 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -76.19 407.19 4.82 -71.38 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.38 Total: 28.94 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 6.04 Total: -15.99 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -3.46 Total: -111.23 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.05 Total: -20.02 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.92 kcal Total: -76.19 4.82 -71.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276771372.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.227 kcal (2) G-P(sol) polarization free energy of solvation -76.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds