Wall clock time and date at job start Sat Apr 11 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46817 * 2 1 4 4 H 1.08999 * 109.47197 * 55.00019 * 3 2 1 5 5 N 1.46505 * 109.47197 * 294.99781 * 3 2 1 6 6 C 1.34771 * 119.99769 * 85.00703 * 5 3 2 7 7 C 1.50699 * 120.00027 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00136 * 359.97438 * 6 5 3 9 9 C 1.50703 * 109.46853 * 175.00168 * 3 2 1 10 10 O 1.21279 * 120.00001 * 120.00221 * 9 3 2 11 11 N 1.34774 * 119.99951 * 299.99733 * 9 3 2 12 12 C 1.46503 * 120.00108 * 179.97438 * 11 9 3 13 13 H 1.08999 * 112.85010 * 23.80934 * 12 11 9 14 14 C 1.53777 * 113.61168 * 155.00121 * 12 11 9 15 15 C 1.53786 * 87.08047 * 139.98526 * 14 12 11 16 16 H 1.08996 * 113.61706 * 89.19945 * 15 14 12 17 17 N 1.46898 * 113.61250 * 220.01985 * 15 14 12 18 18 C 1.46906 * 110.99888 * 203.46661 * 17 15 14 19 19 C 1.50699 * 109.47140 * 180.02562 * 18 17 15 20 20 O 1.21297 * 119.99980 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00037 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99944 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00055 * 359.97438 * 22 21 19 24 24 C 1.38948 * 119.99682 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00492 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99897 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47298 * 59.99790 * 26 24 22 28 28 H 1.48496 * 109.47325 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47000 * 299.99807 * 26 24 22 30 30 C 1.53777 * 87.16971 * 334.60885 * 15 14 12 31 31 H 1.08992 * 109.46761 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46776 * 299.99974 * 1 2 3 33 33 H 1.08995 * 109.46883 * 59.99869 * 1 2 3 34 34 H 1.08992 * 109.47111 * 240.00137 * 2 1 3 35 35 H 1.08999 * 109.47009 * 119.99634 * 2 1 3 36 36 H 0.96994 * 120.00099 * 265.00379 * 5 3 2 37 37 H 1.08996 * 109.46956 * 359.97438 * 7 6 5 38 38 H 1.09004 * 109.47006 * 119.99494 * 7 6 5 39 39 H 1.08997 * 109.47170 * 239.99415 * 7 6 5 40 40 H 0.97001 * 120.00002 * 0.02562 * 11 9 3 41 41 H 1.08995 * 113.62182 * 25.43656 * 14 12 11 42 42 H 1.09006 * 113.61763 * 254.52691 * 14 12 11 43 43 H 1.00902 * 111.00533 * 79.51068 * 17 15 14 44 44 H 1.09000 * 109.47033 * 300.00113 * 18 17 15 45 45 H 1.09001 * 109.46544 * 60.00058 * 18 17 15 46 46 H 0.96996 * 119.99844 * 359.97438 * 21 19 18 47 47 H 0.97001 * 120.00876 * 179.97438 * 25 24 22 48 48 H 1.09001 * 113.61681 * 139.94153 * 30 15 14 49 49 H 1.09012 * 113.61525 * 270.84402 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0975 -1.2519 6 6 0.4352 2.6645 -1.3670 7 6 0.0367 3.3387 -2.6544 8 8 -0.3395 2.6320 -0.4344 9 6 3.5419 1.4444 0.1238 10 8 4.2216 1.9436 -0.7478 11 7 4.1297 0.8912 1.2031 12 6 5.5898 0.8925 1.3232 13 1 6.0616 1.6857 0.7433 14 6 6.0885 0.8113 2.7756 15 6 7.1813 -0.1422 2.2643 16 1 8.0897 0.3671 1.9426 17 7 7.4487 -1.2692 3.1678 18 6 8.7995 -1.8059 2.9544 19 6 9.0367 -2.9582 3.8963 20 8 8.1663 -3.2985 4.6695 21 7 10.2163 -3.6099 3.8801 22 6 10.4319 -4.6585 4.7366 23 1 9.6567 -4.9620 5.4245 24 6 11.6479 -5.3306 4.7195 25 7 12.5911 -4.9616 3.8822 26 14 11.9415 -6.7599 5.8859 27 1 10.9394 -7.8245 5.6264 28 1 13.3072 -7.3018 5.6709 29 1 11.8115 -6.2890 7.2883 30 6 6.2288 -0.4917 1.1087 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.2718 2.1232 -1.9978 37 1 0.8556 3.2679 -3.3702 38 1 -0.8469 2.8483 -3.0631 39 1 -0.1869 4.3878 -2.4611 40 1 3.5861 0.4916 1.9000 41 1 5.3794 0.3385 3.4550 42 1 6.4767 1.7556 3.1575 43 1 6.7518 -1.9911 3.0615 44 1 8.8943 -2.1527 1.9254 45 1 9.5350 -1.0241 3.1437 46 1 10.9125 -3.3374 3.2620 47 1 13.4401 -5.4305 3.8705 48 1 6.7300 -0.5978 0.1466 49 1 5.5580 -1.3215 1.3315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317123056.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:32 Heat of formation + Delta-G solvation = -93.869093 kcal Electronic energy + Delta-G solvation = -28801.744477 eV Core-core repulsion = 24571.171406 eV Total energy + Delta-G solvation = -4230.573071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.01292 -39.92462 -38.82821 -37.99499 -35.75702 -34.78720 -33.93179 -33.15140 -32.35356 -31.20745 -30.16789 -27.76806 -26.65660 -25.85876 -24.38210 -23.09856 -22.36741 -21.04257 -20.72676 -20.21111 -19.19389 -18.07566 -17.87626 -17.36797 -16.65193 -16.29381 -16.14506 -15.82809 -15.46258 -15.26005 -14.74666 -14.58023 -14.48814 -14.36467 -14.06305 -13.85406 -13.43206 -13.29117 -13.10840 -13.01195 -12.84453 -12.63467 -12.54918 -12.36319 -12.14465 -11.92710 -11.68340 -11.57409 -11.34088 -11.29619 -11.07276 -11.05184 -10.90569 -10.45475 -10.31192 -10.23730 -10.20947 -9.51900 -9.51723 -9.36886 -8.47768 -8.05977 -7.97316 -6.43136 -3.84194 2.10648 2.20615 2.44665 3.02129 3.19005 3.24921 3.29215 3.88880 4.05481 4.11452 4.25419 4.36716 4.40157 4.47788 4.50320 4.57814 4.70673 4.74211 4.81436 4.90531 4.95953 5.09719 5.15476 5.25354 5.34750 5.36036 5.37466 5.55539 5.56165 5.58730 5.66577 5.74069 5.75459 5.85746 5.86813 5.91063 5.98189 6.01691 6.21304 6.29772 7.04651 7.06826 7.20771 7.53433 7.61048 7.72759 7.78765 8.04365 8.59442 9.16083 9.52497 10.03816 10.74409 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029481 B = 0.001541 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.531061 B =18165.589164 C =18582.655387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.125 3.875 4 H 0.115 0.885 5 N -0.712 5.712 6 C 0.513 3.487 7 C -0.171 4.171 8 O -0.543 6.543 9 C 0.513 3.487 10 O -0.538 6.538 11 N -0.710 5.710 12 C 0.121 3.879 13 H 0.116 0.884 14 C -0.133 4.133 15 C 0.072 3.928 16 H 0.100 0.900 17 N -0.654 5.654 18 C 0.050 3.950 19 C 0.439 3.561 20 O -0.585 6.585 21 N -0.563 5.563 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 C -0.181 4.181 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.410 0.590 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.404 0.596 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.351 0.649 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.071 0.929 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.145 15.411 -13.850 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.016 3.984 4 H 0.133 0.867 5 N -0.367 5.367 6 C 0.301 3.699 7 C -0.230 4.230 8 O -0.420 6.420 9 C 0.298 3.702 10 O -0.415 6.415 11 N -0.360 5.360 12 C 0.016 3.984 13 H 0.134 0.866 14 C -0.172 4.172 15 C -0.040 4.040 16 H 0.118 0.882 17 N -0.285 5.285 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.469 6.469 21 N -0.199 5.199 22 C -0.431 4.431 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.222 4.222 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.247 0.753 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.239 0.761 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.172 0.828 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.226 0.774 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.382 15.825 -12.778 28.795 hybrid contribution 0.745 -1.236 -0.729 1.616 sum -19.637 14.589 -13.507 27.945 Atomic orbital electron populations 1.21798 0.93828 1.01222 1.03248 1.21928 0.97962 0.93734 1.03251 1.20899 0.91433 0.95895 0.90179 0.86716 1.45891 1.17191 1.57598 1.16000 1.20791 0.81009 0.77758 0.90370 1.21843 1.03690 1.02606 0.94880 1.90743 1.51174 1.59086 1.40980 1.20607 0.89933 0.77540 0.82138 1.90699 1.65240 1.45509 1.40075 1.45942 1.07912 1.59404 1.22756 1.22512 0.78876 0.98571 0.98456 0.86640 1.23474 0.98472 1.00338 0.94907 1.22808 0.96700 0.93765 0.90739 0.88154 1.60001 1.03620 1.11755 1.53174 1.21721 0.91670 0.97421 0.97482 1.19826 0.84154 0.85947 0.87591 1.90520 1.44606 1.68946 1.42853 1.41859 1.13318 1.29569 1.35180 1.19660 1.00260 1.07603 1.15557 0.87967 1.25259 0.95316 0.99353 0.97934 1.69599 1.05839 1.41972 1.36859 0.85914 0.77279 0.80731 0.80269 1.19928 1.20968 1.19872 1.24281 0.99607 0.97636 1.00666 0.92897 0.91805 0.92411 0.91083 0.90396 0.75260 0.90414 0.88618 0.88565 0.76050 0.88904 0.90480 0.82811 0.93748 0.89533 0.77446 0.91802 0.90984 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.52 37.16 0.32 -0.77 16 2 C -0.13 -0.85 5.55 -26.73 -0.15 -1.00 16 3 C 0.12 0.93 2.67 -69.08 -0.18 0.74 16 4 H 0.12 0.90 7.58 -51.93 -0.39 0.51 16 5 N -0.71 -5.11 4.90 -54.93 -0.27 -5.38 16 6 C 0.51 3.96 6.51 -10.99 -0.07 3.89 16 7 C -0.17 -0.70 10.39 36.01 0.37 -0.33 16 8 O -0.54 -6.01 14.24 5.56 0.08 -5.93 16 9 C 0.51 4.56 7.22 -10.98 -0.08 4.48 16 10 O -0.54 -6.44 15.44 5.56 0.09 -6.35 16 11 N -0.71 -5.34 5.22 -52.93 -0.28 -5.62 16 12 C 0.12 1.06 4.24 -67.03 -0.28 0.77 16 13 H 0.12 1.13 7.46 -51.93 -0.39 0.74 16 14 C -0.13 -1.22 7.63 -25.92 -0.20 -1.41 16 15 C 0.07 0.79 4.16 -66.90 -0.28 0.51 16 16 H 0.10 1.04 7.88 -51.93 -0.41 0.64 16 17 N -0.65 -9.82 6.24 -107.13 -0.67 -10.48 16 18 C 0.05 0.84 6.02 -4.97 -0.03 0.81 16 19 C 0.44 10.20 7.82 -10.99 -0.09 10.11 16 20 O -0.58 -15.65 15.78 5.54 0.09 -15.56 16 21 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 22 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 23 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 26 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 30 C -0.18 -1.74 7.52 -25.83 -0.19 -1.93 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.54 7.85 -51.93 -0.41 0.13 16 33 H 0.06 0.49 5.64 -51.93 -0.29 0.20 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.41 7.43 -51.93 -0.39 0.03 16 36 H 0.41 2.65 7.63 -40.82 -0.31 2.33 16 37 H 0.08 0.19 7.91 -51.93 -0.41 -0.23 16 38 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.40 2.23 8.09 -40.82 -0.33 1.90 16 41 H 0.09 0.86 8.12 -51.93 -0.42 0.43 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.35 5.44 7.91 -39.29 -0.31 5.13 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.36 8.13 -51.93 -0.42 0.93 16 46 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.09 0.84 7.83 -51.92 -0.41 0.44 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -34.37 404.26 -8.01 -42.39 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -7.68 Total: 14.87 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -1.10 Total: 7.89 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.55 Total: -59.28 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: 0.25 Total: -27.85 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.37 -8.01 -42.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317123056.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.482 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds