Wall clock time and date at job start Sat Apr 11 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46824 * 2 1 4 4 H 1.08994 * 109.46839 * 304.25541 * 3 2 1 5 5 C 1.53000 * 109.46712 * 184.25726 * 3 2 1 6 6 N 1.46505 * 109.46628 * 184.99824 * 5 3 2 7 7 C 1.34780 * 119.99587 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00019 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99870 * 180.02562 * 7 6 5 10 10 H 1.09005 * 110.21214 * 320.47514 * 9 7 6 11 11 C 1.54481 * 110.24680 * 82.49156 * 9 7 6 12 12 C 1.54627 * 101.76168 * 144.41809 * 11 9 7 13 13 C 1.51279 * 104.19632 * 335.20149 * 12 11 9 14 14 O 1.21290 * 124.94493 * 196.27285 * 13 12 11 15 15 N 1.34424 * 110.11671 * 16.25344 * 13 12 11 16 16 C 1.46497 * 124.34732 * 180.38301 * 15 13 12 17 17 N 1.46901 * 109.47126 * 64.26162 * 3 2 1 18 18 C 1.46896 * 111.00009 * 65.54547 * 17 3 2 19 19 C 1.50701 * 109.46696 * 183.45900 * 18 17 3 20 20 O 1.21296 * 120.00508 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99910 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00079 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00238 * 0.02562 * 22 21 19 24 24 C 1.38952 * 120.00106 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99853 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00228 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46871 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47219 * 120.00077 * 26 24 22 29 29 H 1.48506 * 109.47388 * 240.00785 * 26 24 22 30 30 H 1.09002 * 109.47045 * 294.73717 * 1 2 3 31 31 H 1.08996 * 109.47032 * 54.73449 * 1 2 3 32 32 H 1.09004 * 109.46614 * 174.73636 * 1 2 3 33 33 H 1.08999 * 109.47434 * 119.99592 * 2 1 3 34 34 H 1.08995 * 109.47520 * 240.00219 * 2 1 3 35 35 H 1.08992 * 109.47411 * 304.99866 * 5 3 2 36 36 H 1.09006 * 109.47066 * 65.00178 * 5 3 2 37 37 H 0.96987 * 120.00314 * 0.02562 * 6 5 3 38 38 H 1.08993 * 110.97262 * 262.53555 * 11 9 7 39 39 H 1.09001 * 110.96962 * 26.30397 * 11 9 7 40 40 H 1.09002 * 110.48612 * 216.52830 * 12 11 9 41 41 H 1.09001 * 110.49022 * 93.88404 * 12 11 9 42 42 H 1.09002 * 109.47153 * 270.02139 * 16 15 13 43 43 H 1.08998 * 109.47663 * 30.02435 * 16 15 13 44 44 H 1.09001 * 109.46674 * 150.02881 * 16 15 13 45 45 H 1.00900 * 110.99603 * 189.50109 * 17 3 2 46 46 H 1.08994 * 109.47347 * 303.45710 * 18 17 3 47 47 H 1.08994 * 109.47234 * 63.46444 * 18 17 3 48 48 H 0.96996 * 120.00196 * 0.02562 * 21 19 18 49 49 H 0.96999 * 119.99586 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6157 1.9779 -0.8494 5 6 3.5662 1.4439 -0.1071 6 7 4.0629 2.8170 0.0128 7 6 5.3864 3.0629 -0.0530 8 8 6.1662 2.1475 -0.2110 9 6 5.8974 4.4752 0.0709 10 1 5.2393 5.1620 -0.4615 11 6 6.0018 4.8774 1.5588 12 6 7.2647 5.7696 1.5563 13 6 8.0517 5.2952 0.3545 14 8 9.2234 5.5349 0.1527 15 7 7.2636 4.5691 -0.4570 16 6 7.7108 3.9513 -1.7077 17 7 1.6361 2.1047 1.2476 18 6 2.2957 1.4900 2.4072 19 6 1.7938 2.1374 3.6721 20 8 0.9675 3.0235 3.6134 21 7 2.2623 1.7312 4.8688 22 6 1.8061 2.3206 6.0195 23 1 1.0710 3.1101 5.9672 24 6 2.2887 1.9015 7.2533 25 7 3.1828 0.9405 7.3171 26 14 1.6666 2.7039 8.8212 27 1 0.6706 3.7511 8.4797 28 1 1.0286 1.6769 9.6835 29 1 2.8057 3.3215 9.5469 30 1 -0.3633 0.4300 0.9334 31 1 -0.3633 0.5933 -0.8390 32 1 -0.3633 -1.0234 -0.0943 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.9871 0.8342 0.6923 36 1 3.8631 1.0331 -1.0721 37 1 3.4393 3.5489 0.1395 38 1 5.1249 5.4436 1.8723 39 1 6.1448 4.0008 2.1907 40 1 7.8387 5.6209 2.4709 41 1 6.9907 6.8185 1.4431 42 1 7.5649 4.6507 -2.5309 43 1 8.7679 3.6972 -1.6299 44 1 7.1323 3.0463 -1.8931 45 1 1.8234 3.0954 1.2081 46 1 2.0702 0.4239 2.4306 47 1 3.3736 1.6318 2.3296 48 1 2.9228 1.0224 4.9159 49 1 3.5199 0.6482 8.1783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318563742.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:40 Heat of formation + Delta-G solvation = -100.181596 kcal Electronic energy + Delta-G solvation = -30613.981891 eV Core-core repulsion = 26383.135089 eV Total energy + Delta-G solvation = -4230.846802 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.21266 -39.65356 -38.59822 -37.39382 -36.34896 -34.34941 -33.95914 -32.98014 -32.06149 -31.23971 -29.61840 -27.92821 -26.86400 -26.49116 -24.35382 -23.68003 -22.58774 -20.97043 -20.37104 -19.68097 -19.13726 -18.01123 -17.96767 -17.20077 -16.87913 -16.33210 -16.03320 -15.62810 -15.39970 -15.15616 -14.65184 -14.37054 -14.25414 -14.14196 -14.01485 -13.84373 -13.67047 -13.54494 -13.37635 -12.88775 -12.84874 -12.74749 -12.30192 -12.23295 -12.14163 -11.98407 -11.70638 -11.51555 -11.44574 -11.36758 -11.09911 -10.94602 -10.66055 -10.38279 -10.31412 -10.26841 -10.01728 -9.56518 -9.40385 -8.97358 -8.57714 -8.17011 -8.01250 -6.46224 -3.87455 2.19272 2.27989 2.56562 2.96089 3.12776 3.24081 3.30410 3.84427 3.96875 4.01223 4.05530 4.24133 4.32612 4.53550 4.54801 4.66707 4.78347 4.98596 5.02600 5.11611 5.12080 5.20460 5.26397 5.31021 5.41594 5.43312 5.48333 5.53535 5.60834 5.62972 5.67347 5.72540 5.82084 5.90227 6.01565 6.08555 6.12246 6.16414 6.23933 6.47922 6.77092 7.03609 7.10314 7.45267 7.50781 7.81973 7.92982 8.01158 8.55592 9.13161 9.49167 9.99904 10.71313 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008259 B = 0.003411 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.418467 B = 8206.567199 C =10891.667792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.089 0.911 5 C 0.080 3.920 6 N -0.722 5.722 7 C 0.509 3.491 8 O -0.524 6.524 9 C 0.114 3.886 10 H 0.105 0.895 11 C -0.123 4.123 12 C -0.153 4.153 13 C 0.520 3.480 14 O -0.530 6.530 15 N -0.602 5.602 16 C 0.094 3.906 17 N -0.652 5.652 18 C 0.044 3.956 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.104 0.896 24 C 0.023 3.977 25 N -0.900 5.900 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.401 0.599 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.344 0.656 46 H 0.089 0.911 47 H 0.046 0.954 48 H 0.391 0.609 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 3.486 -17.386 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.107 0.893 5 C -0.046 4.046 6 N -0.376 5.376 7 C 0.293 3.707 8 O -0.400 6.400 9 C 0.005 3.995 10 H 0.123 0.877 11 C -0.161 4.161 12 C -0.193 4.193 13 C 0.308 3.692 14 O -0.406 6.406 15 N -0.336 5.336 16 C -0.048 4.048 17 N -0.283 5.283 18 C -0.089 4.089 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.541 5.541 26 Si 0.755 3.245 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.236 0.764 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.164 0.836 46 H 0.107 0.893 47 H 0.064 0.936 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.631 3.048 -17.485 17.942 hybrid contribution 0.712 0.380 0.811 1.144 sum 3.343 3.427 -16.674 17.348 Atomic orbital electron populations 1.21621 0.94550 1.00663 1.03083 1.21508 0.97409 0.94239 1.02031 1.21993 0.90297 0.97404 0.93704 0.89253 1.22254 0.96702 0.82791 1.02836 1.45946 1.07132 1.10277 1.74195 1.20631 0.82459 0.90938 0.76685 1.90731 1.55531 1.45901 1.47810 1.21648 0.85505 0.94747 0.97556 0.87750 1.22645 0.99559 1.01322 0.92541 1.22365 0.96760 1.01598 0.98550 1.20901 0.86266 0.77555 0.84433 1.90731 1.15027 1.58622 1.76234 1.47840 1.09845 1.52479 1.23424 1.21664 1.01679 0.98021 0.83421 1.60179 1.60761 1.07330 1.00064 1.21778 0.96263 1.00140 0.90696 1.19773 0.86265 0.86988 0.84385 1.90525 1.35886 1.33648 1.86727 1.41880 1.38661 1.34677 1.04703 1.19733 1.22559 1.17798 0.82856 0.87867 1.25264 0.96476 0.96629 0.99495 1.69621 1.29646 1.28252 1.26587 0.85822 0.78625 0.79019 0.81013 1.19202 1.20737 1.20748 0.90996 0.93197 0.93491 0.91401 0.91817 0.90657 0.91029 0.76410 0.87584 0.88994 0.87278 0.87210 0.92909 0.90609 0.89890 0.83630 0.89326 0.93611 0.77547 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.73 37.16 0.36 -1.10 16 2 C -0.11 -1.09 5.31 -26.73 -0.14 -1.23 16 3 C 0.08 0.72 2.71 -67.71 -0.18 0.54 16 4 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 5 C 0.08 0.76 4.47 -4.04 -0.02 0.75 16 6 N -0.72 -6.36 5.31 -60.29 -0.32 -6.68 16 7 C 0.51 5.43 6.53 -10.98 -0.07 5.36 16 8 O -0.52 -7.59 14.60 5.56 0.08 -7.51 16 9 C 0.11 0.99 3.71 -68.16 -0.25 0.73 16 10 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 11 C -0.12 -1.02 6.68 -25.10 -0.17 -1.19 16 12 C -0.15 -1.34 6.86 -26.74 -0.18 -1.53 16 13 C 0.52 6.50 8.02 -10.86 -0.09 6.41 16 14 O -0.53 -8.63 17.60 5.55 0.10 -8.53 16 15 N -0.60 -6.63 3.00 -174.02 -0.52 -7.15 16 16 C 0.09 0.97 10.43 59.85 0.62 1.59 16 17 N -0.65 -8.31 5.41 -108.00 -0.58 -8.90 16 18 C 0.04 0.67 5.30 -4.98 -0.03 0.65 16 19 C 0.44 9.54 7.83 -10.99 -0.09 9.46 16 20 O -0.58 -14.58 15.85 5.54 0.09 -14.49 16 21 N -0.56 -13.52 5.29 -10.96 -0.06 -13.58 16 22 C -0.30 -8.03 9.68 -14.93 -0.14 -8.17 16 23 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 24 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 25 N -0.90 -23.92 13.05 55.50 0.72 -23.19 16 26 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 30 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.72 6.28 -51.93 -0.33 0.40 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.87 6.71 -51.93 -0.35 0.52 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 2.77 7.23 -40.82 -0.30 2.47 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.94 7.91 -51.93 -0.41 0.52 16 40 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.86 7.93 -51.93 -0.41 0.44 16 44 H 0.08 0.89 5.98 -51.93 -0.31 0.57 16 45 H 0.34 4.26 7.29 -39.29 -0.29 3.97 16 46 H 0.09 1.32 6.22 -51.93 -0.32 1.00 16 47 H 0.05 0.67 6.49 -51.93 -0.34 0.33 16 48 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 49 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -34.67 398.43 -7.51 -42.17 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -7.52 Total: 13.65 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -0.47 Total: 12.77 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.76 Total: -59.50 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: 0.27 Total: -30.54 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.67 -7.51 -42.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318563742.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.008 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds