Wall clock time and date at job start Sat Apr 11 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46824 * 2 1 4 4 H 1.08994 * 109.46839 * 304.25541 * 3 2 1 5 5 C 1.53000 * 109.46712 * 184.25726 * 3 2 1 6 6 N 1.46505 * 109.46628 * 184.99824 * 5 3 2 7 7 C 1.34780 * 119.99587 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00019 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99870 * 180.02562 * 7 6 5 10 10 H 1.09005 * 110.21214 * 320.47514 * 9 7 6 11 11 C 1.54481 * 110.24680 * 82.49156 * 9 7 6 12 12 C 1.54627 * 101.76168 * 144.41809 * 11 9 7 13 13 C 1.51279 * 104.19632 * 335.20149 * 12 11 9 14 14 O 1.21290 * 124.94493 * 196.27285 * 13 12 11 15 15 N 1.34424 * 110.11671 * 16.25344 * 13 12 11 16 16 C 1.46497 * 124.34732 * 180.38301 * 15 13 12 17 17 N 1.46901 * 109.47126 * 64.26162 * 3 2 1 18 18 C 1.46896 * 111.00009 * 65.54547 * 17 3 2 19 19 C 1.50701 * 109.46696 * 183.45900 * 18 17 3 20 20 O 1.21296 * 120.00508 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99910 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00079 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00238 * 0.02562 * 22 21 19 24 24 C 1.38952 * 120.00106 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99853 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00228 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46871 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47219 * 120.00077 * 26 24 22 29 29 H 1.48506 * 109.47388 * 240.00785 * 26 24 22 30 30 H 1.09002 * 109.47045 * 294.73717 * 1 2 3 31 31 H 1.08996 * 109.47032 * 54.73449 * 1 2 3 32 32 H 1.09004 * 109.46614 * 174.73636 * 1 2 3 33 33 H 1.08999 * 109.47434 * 119.99592 * 2 1 3 34 34 H 1.08995 * 109.47520 * 240.00219 * 2 1 3 35 35 H 1.08992 * 109.47411 * 304.99866 * 5 3 2 36 36 H 1.09006 * 109.47066 * 65.00178 * 5 3 2 37 37 H 0.96987 * 120.00314 * 0.02562 * 6 5 3 38 38 H 1.08993 * 110.97262 * 262.53555 * 11 9 7 39 39 H 1.09001 * 110.96962 * 26.30397 * 11 9 7 40 40 H 1.09002 * 110.48612 * 216.52830 * 12 11 9 41 41 H 1.09001 * 110.49022 * 93.88404 * 12 11 9 42 42 H 1.09002 * 109.47153 * 270.02139 * 16 15 13 43 43 H 1.08998 * 109.47663 * 30.02435 * 16 15 13 44 44 H 1.09001 * 109.46674 * 150.02881 * 16 15 13 45 45 H 1.00900 * 110.99603 * 189.50109 * 17 3 2 46 46 H 1.08994 * 109.47347 * 303.45710 * 18 17 3 47 47 H 1.08994 * 109.47234 * 63.46444 * 18 17 3 48 48 H 0.96996 * 120.00196 * 0.02562 * 21 19 18 49 49 H 0.96999 * 119.99586 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6157 1.9779 -0.8494 5 6 3.5662 1.4439 -0.1071 6 7 4.0629 2.8170 0.0128 7 6 5.3864 3.0629 -0.0530 8 8 6.1662 2.1475 -0.2110 9 6 5.8974 4.4752 0.0709 10 1 5.2393 5.1620 -0.4615 11 6 6.0018 4.8774 1.5588 12 6 7.2647 5.7696 1.5563 13 6 8.0517 5.2952 0.3545 14 8 9.2234 5.5349 0.1527 15 7 7.2636 4.5691 -0.4570 16 6 7.7108 3.9513 -1.7077 17 7 1.6361 2.1047 1.2476 18 6 2.2957 1.4900 2.4072 19 6 1.7938 2.1374 3.6721 20 8 0.9675 3.0235 3.6134 21 7 2.2623 1.7312 4.8688 22 6 1.8061 2.3206 6.0195 23 1 1.0710 3.1101 5.9672 24 6 2.2887 1.9015 7.2533 25 7 3.1828 0.9405 7.3171 26 14 1.6666 2.7039 8.8212 27 1 0.6706 3.7511 8.4797 28 1 1.0286 1.6769 9.6835 29 1 2.8057 3.3215 9.5469 30 1 -0.3633 0.4300 0.9334 31 1 -0.3633 0.5933 -0.8390 32 1 -0.3633 -1.0234 -0.0943 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.9871 0.8342 0.6923 36 1 3.8631 1.0331 -1.0721 37 1 3.4393 3.5489 0.1395 38 1 5.1249 5.4436 1.8723 39 1 6.1448 4.0008 2.1907 40 1 7.8387 5.6209 2.4709 41 1 6.9907 6.8185 1.4431 42 1 7.5649 4.6507 -2.5309 43 1 8.7679 3.6972 -1.6299 44 1 7.1323 3.0463 -1.8931 45 1 1.8234 3.0954 1.2081 46 1 2.0702 0.4239 2.4306 47 1 3.3736 1.6318 2.3296 48 1 2.9228 1.0224 4.9159 49 1 3.5199 0.6482 8.1783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318563742.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:39 Heat of formation + Delta-G solvation = -128.078612 kcal Electronic energy + Delta-G solvation = -30615.191596 eV Core-core repulsion = 26383.135089 eV Total energy + Delta-G solvation = -4232.056507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.05737 -40.65972 -40.01116 -38.63667 -37.30981 -35.92296 -35.16440 -33.75449 -33.30943 -32.96964 -30.49067 -28.95093 -27.77296 -27.67680 -26.01735 -24.51278 -23.33853 -21.89174 -21.51330 -20.70890 -20.37674 -19.81396 -18.81585 -18.29556 -17.93925 -17.26899 -17.03949 -16.84743 -16.58139 -16.24199 -16.06643 -15.77724 -15.58559 -15.09831 -15.01099 -14.85954 -14.70203 -14.59553 -14.36895 -13.96937 -13.76722 -13.69057 -13.53701 -13.44432 -13.16598 -13.03766 -12.90231 -12.86420 -12.58534 -12.36062 -12.26056 -12.15399 -12.09364 -11.77109 -11.51654 -11.45856 -11.21528 -10.96976 -10.30283 -10.21774 -9.97492 -9.83027 -9.31006 -8.43641 -5.91860 1.34909 1.38450 1.38805 1.44337 1.57707 1.75978 2.09797 2.17458 2.31108 2.95689 3.21626 3.24457 3.32677 3.55876 3.62277 3.75529 3.90730 3.96730 4.06918 4.23684 4.27473 4.34047 4.34658 4.42193 4.48612 4.56597 4.61565 4.70958 4.72212 4.77348 4.78263 4.90033 4.95229 4.97823 5.01877 5.22073 5.29991 5.30241 5.41392 5.44535 5.60413 5.90844 5.91593 6.11531 6.35483 6.47755 6.62948 6.96472 7.08526 7.16581 7.60903 8.15258 8.73860 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008259 B = 0.003411 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.418467 B = 8206.567199 C =10891.667792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C 0.088 3.912 4 H 0.115 0.885 5 C 0.085 3.915 6 N -0.710 5.710 7 C 0.508 3.492 8 O -0.567 6.567 9 C 0.115 3.885 10 H 0.147 0.853 11 C -0.118 4.118 12 C -0.145 4.145 13 C 0.508 3.492 14 O -0.580 6.580 15 N -0.604 5.604 16 C 0.093 3.907 17 N -0.659 5.659 18 C 0.064 3.936 19 C 0.443 3.557 20 O -0.616 6.616 21 N -0.576 5.576 22 C -0.327 4.327 23 H 0.082 0.918 24 C -0.014 4.014 25 N -0.923 5.923 26 Si 0.989 3.011 27 H -0.270 1.270 28 H -0.275 1.275 29 H -0.273 1.273 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.413 0.587 38 H 0.135 0.865 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.139 0.861 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.348 0.652 46 H 0.097 0.903 47 H 0.058 0.942 48 H 0.393 0.607 49 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 4.252 -18.364 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.022 4.022 4 H 0.133 0.867 5 C -0.041 4.041 6 N -0.363 5.363 7 C 0.293 3.707 8 O -0.446 6.446 9 C 0.008 3.992 10 H 0.164 0.836 11 C -0.156 4.156 12 C -0.184 4.184 13 C 0.297 3.703 14 O -0.460 6.460 15 N -0.337 5.337 16 C -0.048 4.048 17 N -0.292 5.292 18 C -0.068 4.068 19 C 0.230 3.770 20 O -0.502 6.502 21 N -0.214 5.214 22 C -0.457 4.457 23 H 0.100 0.900 24 C -0.213 4.213 25 N -0.564 5.564 26 Si 0.814 3.186 27 H -0.194 1.194 28 H -0.201 1.201 29 H -0.198 1.198 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.251 0.749 38 H 0.153 0.847 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.157 0.843 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.168 0.832 46 H 0.115 0.885 47 H 0.076 0.924 48 H 0.226 0.774 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.378 3.807 -18.483 18.921 hybrid contribution 1.016 0.098 1.012 1.437 sum 2.394 3.904 -17.471 18.062 Atomic orbital electron populations 1.21571 0.95055 1.01082 1.01861 1.21543 0.96852 0.94353 1.02557 1.22030 0.90163 0.97404 0.92607 0.86710 1.22159 0.96443 0.82898 1.02557 1.45843 1.06830 1.10489 1.73143 1.20978 0.82570 0.91307 0.75823 1.90723 1.56643 1.47313 1.49935 1.21918 0.84788 0.94275 0.98241 0.83581 1.22681 1.00406 1.00634 0.91868 1.22400 0.96220 1.03184 0.96622 1.21571 0.85921 0.77351 0.85423 1.90695 1.17144 1.60667 1.77480 1.48024 1.10802 1.51593 1.23309 1.21667 1.00531 0.98540 0.84083 1.60144 1.60901 1.07741 1.00400 1.21515 0.96705 0.99933 0.88670 1.20806 0.84783 0.85904 0.85474 1.90497 1.37119 1.35048 1.87504 1.41971 1.39264 1.35094 1.05036 1.19691 1.23162 1.18296 0.84527 0.90002 1.25998 0.96429 0.96972 1.01911 1.69689 1.30283 1.29013 1.27447 0.84915 0.78195 0.78133 0.77404 1.19421 1.20078 1.19824 0.94098 0.91945 0.92830 0.92734 0.89490 0.92675 0.90162 0.74939 0.84715 0.91286 0.87473 0.84319 0.90699 0.92434 0.90201 0.83187 0.88539 0.92394 0.77396 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.73 71.98 0.70 -1.89 16 2 C -0.11 -1.92 5.31 30.60 0.16 -1.75 16 3 C 0.09 1.40 2.71 44.92 0.12 1.52 16 4 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 5 C 0.09 1.43 4.47 86.38 0.39 1.81 16 6 N -0.71 -10.64 5.31 -463.04 -2.46 -13.10 16 7 C 0.51 9.93 6.53 87.66 0.57 10.50 16 8 O -0.57 -16.12 14.60 -3.04 -0.04 -16.17 16 9 C 0.11 1.71 3.71 44.70 0.17 1.88 16 10 H 0.15 1.04 8.14 -2.38 -0.02 1.02 16 11 C -0.12 -1.70 6.68 31.65 0.21 -1.49 16 12 C -0.14 -2.31 6.86 30.59 0.21 -2.10 16 13 C 0.51 12.49 8.02 87.90 0.71 13.20 16 14 O -0.58 -19.40 17.60 -3.06 -0.05 -19.45 16 15 N -0.60 -12.71 3.00 -823.07 -2.47 -15.18 16 16 C 0.09 1.89 10.43 127.77 1.33 3.22 16 17 N -0.66 -15.49 5.41 -495.59 -2.68 -18.17 16 18 C 0.06 1.91 5.30 85.56 0.45 2.36 16 19 C 0.44 19.14 7.83 87.66 0.69 19.83 16 20 O -0.62 -30.78 15.85 -3.08 -0.05 -30.82 16 21 N -0.58 -28.03 5.29 -306.98 -1.62 -29.65 16 22 C -0.33 -17.77 9.68 84.04 0.81 -16.96 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 25 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 26 Si 0.99 41.78 29.55 68.60 2.03 43.80 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 28 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 30 H 0.04 1.02 7.88 -2.39 -0.02 1.00 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.05 1.07 6.28 -2.39 -0.01 1.05 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 1.19 6.71 -2.39 -0.02 1.17 16 36 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.41 4.27 7.23 -92.72 -0.67 3.60 16 38 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.34 7.91 -2.39 -0.02 1.32 16 40 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.36 7.93 -2.39 -0.02 1.34 16 44 H 0.08 1.68 5.98 -2.39 -0.01 1.66 16 45 H 0.35 7.75 7.29 -89.69 -0.65 7.09 16 46 H 0.10 2.79 6.22 -2.39 -0.01 2.77 16 47 H 0.06 1.62 6.49 -2.39 -0.02 1.60 16 48 H 0.39 18.61 7.90 -92.71 -0.73 17.88 16 49 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -77.81 398.43 -1.14 -78.95 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -1.05 Total: 38.65 kcal Atomic # 6 Polarization: 22.93 SS G_CDS: 6.99 Total: 29.92 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -8.95 Total: -124.88 kcal Atomic # 8 Polarization: -66.30 SS G_CDS: -0.15 Total: -66.44 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -77.81 -1.14 -78.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318563742.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.129 kcal (2) G-P(sol) polarization free energy of solvation -77.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds