Wall clock time and date at job start Sat Apr 11 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47275 * 2 1 4 4 H 1.09006 * 109.46934 * 55.16447 * 3 2 1 5 5 C 1.53001 * 109.47460 * 175.16701 * 3 2 1 6 6 N 1.46500 * 109.47209 * 175.00137 * 5 3 2 7 7 C 1.34777 * 119.99634 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00192 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99603 * 179.97438 * 7 6 5 10 10 H 1.09004 * 110.28812 * 320.51881 * 9 7 6 11 11 C 1.54658 * 110.18254 * 82.64496 * 9 7 6 12 12 C 1.54634 * 101.68527 * 144.67971 * 11 9 7 13 13 C 1.51283 * 104.19508 * 334.99086 * 12 11 9 14 14 O 1.21276 * 124.94037 * 196.27427 * 13 12 11 15 15 N 1.34418 * 110.11309 * 16.24760 * 13 12 11 16 16 C 1.46507 * 124.34588 * 180.40674 * 15 13 12 17 17 N 1.46892 * 109.47116 * 295.16977 * 3 2 1 18 18 C 1.46905 * 110.99935 * 297.29514 * 17 3 2 19 19 C 1.50703 * 109.47282 * 179.88485 * 18 17 3 20 20 O 1.21292 * 119.99742 * 359.97438 * 19 18 17 21 21 N 1.34770 * 120.00041 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00351 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99592 * 359.97438 * 22 21 19 24 24 C 1.38953 * 120.00403 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99601 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99803 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47075 * 60.00726 * 26 24 22 28 28 H 1.48499 * 109.46761 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47415 * 300.00030 * 26 24 22 30 30 H 1.08997 * 109.47071 * 55.54710 * 1 2 3 31 31 H 1.09000 * 109.47141 * 175.55154 * 1 2 3 32 32 H 1.09004 * 109.46952 * 295.54512 * 1 2 3 33 33 H 1.09001 * 109.47375 * 239.99739 * 2 1 3 34 34 H 1.09005 * 109.47095 * 119.99893 * 2 1 3 35 35 H 1.08996 * 109.46958 * 54.99549 * 5 3 2 36 36 H 1.09000 * 109.47083 * 295.00362 * 5 3 2 37 37 H 0.97001 * 119.99775 * 359.97438 * 6 5 3 38 38 H 1.09000 * 111.19106 * 26.51013 * 11 9 7 39 39 H 1.09001 * 110.82789 * 262.69193 * 11 9 7 40 40 H 1.09003 * 110.48529 * 216.31042 * 12 11 9 41 41 H 1.08997 * 110.48441 * 93.67045 * 12 11 9 42 42 H 1.08995 * 109.47067 * 0.02949 * 16 15 13 43 43 H 1.08998 * 109.46559 * 120.03134 * 16 15 13 44 44 H 1.09004 * 109.47124 * 240.02715 * 16 15 13 45 45 H 1.00897 * 111.00348 * 173.34564 * 17 3 2 46 46 H 1.09001 * 109.47019 * 299.88436 * 18 17 3 47 47 H 1.08998 * 109.46967 * 59.88593 * 18 17 3 48 48 H 0.97000 * 120.00101 * 359.97438 * 21 19 18 49 49 H 0.97004 * 119.99240 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6077 1.9807 0.8436 5 6 3.5652 1.4443 0.1215 6 7 4.0631 2.8169 0.0018 7 6 5.3860 3.0629 0.0782 8 8 6.1642 2.1480 0.2467 9 6 5.8982 4.4747 -0.0456 10 1 5.3382 5.0143 -0.8094 11 6 5.7921 5.2020 1.3152 12 6 7.0541 6.0954 1.2921 13 6 8.0006 5.3762 0.3563 14 8 9.1922 5.5871 0.2766 15 7 7.3287 4.4691 -0.3735 16 6 7.9443 3.5919 -1.3725 17 7 1.6480 2.1005 -1.2534 18 6 2.2657 1.4393 -2.4107 19 6 1.8391 2.1386 -3.6757 20 8 1.0935 3.0935 -3.6187 21 7 2.2853 1.7023 -4.8702 22 6 1.8969 2.3381 -6.0210 23 1 1.2329 3.1884 -5.9703 24 6 2.3574 1.8886 -7.2525 25 7 3.1648 0.8536 -7.3141 26 14 1.8274 2.7546 -8.8205 27 1 2.2601 4.1743 -8.7723 28 1 2.4516 2.0859 -9.9904 29 1 0.3491 2.6915 -8.9455 30 1 -0.3633 0.5814 -0.8474 31 1 -0.3633 -1.0246 -0.0797 32 1 -0.3633 0.4432 0.9272 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9936 0.8318 -0.6718 36 1 3.8530 1.0366 1.0906 37 1 3.4407 3.5485 -0.1333 38 1 5.8299 4.4950 2.1439 39 1 4.8866 5.8071 1.3617 40 1 7.4870 6.1699 2.2896 41 1 6.8135 7.0854 0.9047 42 1 9.0143 3.7935 -1.4229 43 1 7.7835 2.5514 -1.0906 44 1 7.4931 3.7783 -2.3471 45 1 1.8774 3.0828 -1.2333 46 1 3.3509 1.4847 -2.3187 47 1 1.9474 0.3974 -2.4465 48 1 2.8813 0.9383 -4.9157 49 1 3.4859 0.5396 -8.1739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318563743.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:44 Heat of formation + Delta-G solvation = -100.356917 kcal Electronic energy + Delta-G solvation = -30508.727625 eV Core-core repulsion = 26277.873220 eV Total energy + Delta-G solvation = -4230.854405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.20496 -39.65175 -38.60625 -37.39322 -36.36129 -34.34980 -33.96753 -32.98914 -32.02989 -31.24895 -29.63742 -27.94565 -26.82043 -26.48311 -24.34518 -23.71063 -22.63431 -20.95669 -20.38148 -19.68037 -19.13684 -18.03295 -17.96213 -17.18524 -16.89179 -16.32181 -16.05948 -15.63322 -15.36889 -15.17866 -14.61145 -14.39732 -14.21477 -14.17880 -14.08772 -13.79090 -13.71067 -13.54039 -13.35039 -13.01206 -12.80774 -12.71467 -12.28593 -12.21012 -12.11364 -11.99859 -11.73419 -11.55950 -11.51670 -11.37987 -11.06520 -10.94048 -10.65174 -10.48258 -10.33344 -10.26041 -10.04795 -9.55094 -9.39283 -8.89093 -8.56487 -8.19075 -8.01836 -6.46471 -3.87780 2.18735 2.29712 2.58715 2.97532 3.16179 3.22896 3.26528 3.83793 3.91390 3.94685 4.03269 4.22949 4.27757 4.51808 4.54001 4.62750 4.78212 4.95431 5.03066 5.11361 5.16631 5.20203 5.21844 5.26047 5.39904 5.42013 5.45503 5.47866 5.51810 5.66664 5.72338 5.78146 5.83575 5.92163 6.02022 6.10317 6.14751 6.15907 6.23221 6.47995 6.80992 7.03902 7.12053 7.45683 7.50047 7.83479 7.93517 8.00203 8.55022 9.12396 9.48445 9.99175 10.70934 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008327 B = 0.003257 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.840265 B = 8595.941619 C =11010.076157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.090 0.910 5 C 0.080 3.920 6 N -0.722 5.722 7 C 0.510 3.490 8 O -0.524 6.524 9 C 0.111 3.889 10 H 0.108 0.892 11 C -0.119 4.119 12 C -0.153 4.153 13 C 0.519 3.481 14 O -0.531 6.531 15 N -0.599 5.599 16 C 0.084 3.916 17 N -0.652 5.652 18 C 0.043 3.957 19 C 0.439 3.561 20 O -0.585 6.585 21 N -0.561 5.561 22 C -0.302 4.302 23 H 0.102 0.898 24 C 0.024 3.976 25 N -0.900 5.900 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.401 0.599 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.345 0.655 46 H 0.046 0.954 47 H 0.090 0.910 48 H 0.392 0.608 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 3.495 18.681 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.034 4.034 4 H 0.108 0.892 5 C -0.046 4.046 6 N -0.376 5.376 7 C 0.294 3.706 8 O -0.400 6.400 9 C 0.003 3.997 10 H 0.126 0.874 11 C -0.157 4.157 12 C -0.193 4.193 13 C 0.306 3.694 14 O -0.408 6.408 15 N -0.333 5.333 16 C -0.057 4.057 17 N -0.284 5.284 18 C -0.089 4.089 19 C 0.225 3.775 20 O -0.470 6.470 21 N -0.198 5.198 22 C -0.432 4.432 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.541 5.541 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.198 1.198 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.236 0.764 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.165 0.835 46 H 0.064 0.936 47 H 0.108 0.892 48 H 0.225 0.775 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.405 3.074 18.481 18.889 hybrid contribution 0.707 0.352 -1.016 1.287 sum 3.112 3.426 17.466 18.068 Atomic orbital electron populations 1.21657 0.94589 1.01283 1.02701 1.21520 0.97395 0.94249 1.02102 1.21981 0.90378 0.97411 0.93667 0.89174 1.22240 0.96721 0.82815 1.02808 1.45945 1.07247 1.10277 1.74101 1.20608 0.82470 0.90785 0.76733 1.90711 1.55556 1.45976 1.47744 1.21701 0.83889 0.94374 0.99762 0.87412 1.22634 0.99451 0.98696 0.94962 1.22364 0.95206 1.00250 1.01489 1.20831 0.87913 0.79695 0.80916 1.90732 1.14486 1.67002 1.68578 1.47816 1.07106 1.38363 1.39966 1.21803 0.98966 0.94952 0.90003 1.60233 1.61607 1.06658 0.99930 1.21785 0.96830 0.99635 0.90664 1.19775 0.85915 0.87383 0.84451 1.90519 1.39626 1.30156 1.86685 1.41858 1.43227 1.29873 1.04803 1.19641 1.27392 1.13111 0.83008 0.87970 1.25264 0.96511 0.96520 0.99503 1.69603 1.32931 1.24652 1.26910 0.85928 0.78927 0.79189 0.80246 1.19906 1.20943 1.19848 0.90695 0.93373 0.93317 0.91370 0.91784 0.90724 0.90994 0.76392 0.89338 0.87915 0.87553 0.87213 0.89891 0.90041 0.91953 0.83534 0.93638 0.89233 0.77516 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.85 37.16 0.37 -1.12 16 2 C -0.11 -1.09 5.25 -26.73 -0.14 -1.23 16 3 C 0.08 0.73 2.72 -67.72 -0.18 0.54 16 4 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 5 C 0.08 0.77 4.55 -4.04 -0.02 0.76 16 6 N -0.72 -6.50 5.36 -60.30 -0.32 -6.82 16 7 C 0.51 5.53 6.69 -10.99 -0.07 5.45 16 8 O -0.52 -7.66 14.47 5.56 0.08 -7.58 16 9 C 0.11 0.98 3.72 -68.07 -0.25 0.72 16 10 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.12 -0.69 6.67 -25.00 -0.17 -0.86 16 12 C -0.15 -1.09 6.86 -26.74 -0.18 -1.27 16 13 C 0.52 6.30 8.02 -10.86 -0.09 6.21 16 14 O -0.53 -8.56 17.35 5.56 0.10 -8.47 16 15 N -0.60 -6.97 3.00 -173.91 -0.52 -7.50 16 16 C 0.08 1.03 10.49 59.85 0.63 1.66 16 17 N -0.65 -8.47 5.36 -107.99 -0.58 -9.04 16 18 C 0.04 0.68 5.38 -4.97 -0.03 0.65 16 19 C 0.44 9.68 7.82 -10.99 -0.09 9.59 16 20 O -0.59 -14.80 15.78 5.55 0.09 -14.71 16 21 N -0.56 -13.68 5.29 -10.96 -0.06 -13.74 16 22 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 23 H 0.10 2.90 7.16 -52.48 -0.38 2.52 16 24 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 25 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 26 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 30 H 0.07 0.96 7.63 -51.93 -0.40 0.57 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.72 6.23 -51.93 -0.32 0.40 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.88 6.66 -51.93 -0.35 0.53 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.40 2.86 7.19 -40.82 -0.29 2.57 16 38 H 0.09 0.55 7.92 -51.93 -0.41 0.13 16 39 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.03 7.53 -51.93 -0.39 0.64 16 43 H 0.08 1.09 6.18 -51.93 -0.32 0.77 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.34 4.43 7.07 -39.29 -0.28 4.15 16 46 H 0.05 0.68 6.37 -51.93 -0.33 0.35 16 47 H 0.09 1.35 6.26 -51.93 -0.33 1.03 16 48 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 49 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -34.99 397.55 -7.47 -42.46 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -7.48 Total: 13.80 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: -0.47 Total: 13.32 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.76 Total: -60.45 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: 0.26 Total: -30.75 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.99 -7.47 -42.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318563743.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.896 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds