Wall clock time and date at job start Sat Apr 11 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47275 * 2 1 4 4 H 1.09006 * 109.46934 * 55.16447 * 3 2 1 5 5 C 1.53001 * 109.47460 * 175.16701 * 3 2 1 6 6 N 1.46500 * 109.47209 * 175.00137 * 5 3 2 7 7 C 1.34777 * 119.99634 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00192 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99603 * 179.97438 * 7 6 5 10 10 H 1.09004 * 110.28812 * 320.51881 * 9 7 6 11 11 C 1.54658 * 110.18254 * 82.64496 * 9 7 6 12 12 C 1.54634 * 101.68527 * 144.67971 * 11 9 7 13 13 C 1.51283 * 104.19508 * 334.99086 * 12 11 9 14 14 O 1.21276 * 124.94037 * 196.27427 * 13 12 11 15 15 N 1.34418 * 110.11309 * 16.24760 * 13 12 11 16 16 C 1.46507 * 124.34588 * 180.40674 * 15 13 12 17 17 N 1.46892 * 109.47116 * 295.16977 * 3 2 1 18 18 C 1.46905 * 110.99935 * 297.29514 * 17 3 2 19 19 C 1.50703 * 109.47282 * 179.88485 * 18 17 3 20 20 O 1.21292 * 119.99742 * 359.97438 * 19 18 17 21 21 N 1.34770 * 120.00041 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00351 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99592 * 359.97438 * 22 21 19 24 24 C 1.38953 * 120.00403 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99601 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99803 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47075 * 60.00726 * 26 24 22 28 28 H 1.48499 * 109.46761 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47415 * 300.00030 * 26 24 22 30 30 H 1.08997 * 109.47071 * 55.54710 * 1 2 3 31 31 H 1.09000 * 109.47141 * 175.55154 * 1 2 3 32 32 H 1.09004 * 109.46952 * 295.54512 * 1 2 3 33 33 H 1.09001 * 109.47375 * 239.99739 * 2 1 3 34 34 H 1.09005 * 109.47095 * 119.99893 * 2 1 3 35 35 H 1.08996 * 109.46958 * 54.99549 * 5 3 2 36 36 H 1.09000 * 109.47083 * 295.00362 * 5 3 2 37 37 H 0.97001 * 119.99775 * 359.97438 * 6 5 3 38 38 H 1.09000 * 111.19106 * 26.51013 * 11 9 7 39 39 H 1.09001 * 110.82789 * 262.69193 * 11 9 7 40 40 H 1.09003 * 110.48529 * 216.31042 * 12 11 9 41 41 H 1.08997 * 110.48441 * 93.67045 * 12 11 9 42 42 H 1.08995 * 109.47067 * 0.02949 * 16 15 13 43 43 H 1.08998 * 109.46559 * 120.03134 * 16 15 13 44 44 H 1.09004 * 109.47124 * 240.02715 * 16 15 13 45 45 H 1.00897 * 111.00348 * 173.34564 * 17 3 2 46 46 H 1.09001 * 109.47019 * 299.88436 * 18 17 3 47 47 H 1.08998 * 109.46967 * 59.88593 * 18 17 3 48 48 H 0.97000 * 120.00101 * 359.97438 * 21 19 18 49 49 H 0.97004 * 119.99240 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6077 1.9807 0.8436 5 6 3.5652 1.4443 0.1215 6 7 4.0631 2.8169 0.0018 7 6 5.3860 3.0629 0.0782 8 8 6.1642 2.1480 0.2467 9 6 5.8982 4.4747 -0.0456 10 1 5.3382 5.0143 -0.8094 11 6 5.7921 5.2020 1.3152 12 6 7.0541 6.0954 1.2921 13 6 8.0006 5.3762 0.3563 14 8 9.1922 5.5871 0.2766 15 7 7.3287 4.4691 -0.3735 16 6 7.9443 3.5919 -1.3725 17 7 1.6480 2.1005 -1.2534 18 6 2.2657 1.4393 -2.4107 19 6 1.8391 2.1386 -3.6757 20 8 1.0935 3.0935 -3.6187 21 7 2.2853 1.7023 -4.8702 22 6 1.8969 2.3381 -6.0210 23 1 1.2329 3.1884 -5.9703 24 6 2.3574 1.8886 -7.2525 25 7 3.1648 0.8536 -7.3141 26 14 1.8274 2.7546 -8.8205 27 1 2.2601 4.1743 -8.7723 28 1 2.4516 2.0859 -9.9904 29 1 0.3491 2.6915 -8.9455 30 1 -0.3633 0.5814 -0.8474 31 1 -0.3633 -1.0246 -0.0797 32 1 -0.3633 0.4432 0.9272 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9936 0.8318 -0.6718 36 1 3.8530 1.0366 1.0906 37 1 3.4407 3.5485 -0.1333 38 1 5.8299 4.4950 2.1439 39 1 4.8866 5.8071 1.3617 40 1 7.4870 6.1699 2.2896 41 1 6.8135 7.0854 0.9047 42 1 9.0143 3.7935 -1.4229 43 1 7.7835 2.5514 -1.0906 44 1 7.4931 3.7783 -2.3471 45 1 1.8774 3.0828 -1.2333 46 1 3.3509 1.4847 -2.3187 47 1 1.9474 0.3974 -2.4465 48 1 2.8813 0.9383 -4.9157 49 1 3.4859 0.5396 -8.1739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318563743.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:43 Heat of formation + Delta-G solvation = -128.729647 kcal Electronic energy + Delta-G solvation = -30509.957959 eV Core-core repulsion = 26277.873220 eV Total energy + Delta-G solvation = -4232.084738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.03173 -40.66809 -40.02975 -38.64368 -37.29862 -35.95641 -35.17353 -33.73709 -33.32632 -32.96240 -30.49560 -28.95439 -27.77617 -27.70441 -26.02890 -24.50047 -23.30634 -21.88300 -21.53940 -20.70891 -20.38944 -19.84203 -18.83091 -18.27832 -17.95270 -17.26763 -17.02731 -16.85898 -16.60695 -16.25628 -16.06061 -15.78300 -15.61316 -15.13711 -15.00941 -14.84490 -14.66975 -14.55224 -14.40327 -14.02510 -13.75661 -13.67308 -13.49447 -13.43567 -13.17993 -13.09481 -12.87473 -12.86617 -12.61392 -12.42229 -12.27281 -12.13670 -12.07941 -11.76416 -11.50913 -11.46319 -11.21932 -10.97439 -10.32468 -10.22677 -10.00775 -9.80918 -9.33438 -8.46100 -5.94733 1.33858 1.39668 1.41920 1.43438 1.52354 1.78282 2.06570 2.16784 2.29099 2.94669 3.21684 3.22560 3.35309 3.53892 3.63186 3.75258 3.95068 4.03282 4.06292 4.22603 4.24656 4.32431 4.35628 4.39999 4.47655 4.55140 4.59983 4.70596 4.72571 4.76487 4.79493 4.93429 4.97896 5.01299 5.02186 5.22551 5.26492 5.30936 5.40871 5.41516 5.61380 5.88840 5.95937 6.08977 6.36057 6.45215 6.59830 6.97351 7.09797 7.13185 7.57457 8.11677 8.70972 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008327 B = 0.003257 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.840265 B = 8595.941619 C =11010.076157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.088 3.912 4 H 0.117 0.883 5 C 0.085 3.915 6 N -0.711 5.711 7 C 0.508 3.492 8 O -0.568 6.568 9 C 0.106 3.894 10 H 0.129 0.871 11 C -0.106 4.106 12 C -0.142 4.142 13 C 0.503 3.497 14 O -0.584 6.584 15 N -0.607 5.607 16 C 0.086 3.914 17 N -0.659 5.659 18 C 0.064 3.936 19 C 0.440 3.560 20 O -0.617 6.617 21 N -0.575 5.575 22 C -0.332 4.332 23 H 0.082 0.918 24 C -0.013 4.013 25 N -0.922 5.922 26 Si 0.990 3.010 27 H -0.270 1.270 28 H -0.274 1.274 29 H -0.271 1.271 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.413 0.587 38 H 0.087 0.913 39 H 0.144 0.856 40 H 0.119 0.881 41 H 0.135 0.865 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.347 0.653 46 H 0.056 0.944 47 H 0.099 0.901 48 H 0.393 0.607 49 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 4.398 20.277 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.022 4.022 4 H 0.135 0.865 5 C -0.041 4.041 6 N -0.364 5.364 7 C 0.294 3.706 8 O -0.446 6.446 9 C -0.001 4.001 10 H 0.146 0.854 11 C -0.144 4.144 12 C -0.181 4.181 13 C 0.293 3.707 14 O -0.464 6.464 15 N -0.339 5.339 16 C -0.056 4.056 17 N -0.291 5.291 18 C -0.069 4.069 19 C 0.228 3.772 20 O -0.503 6.503 21 N -0.212 5.212 22 C -0.461 4.461 23 H 0.100 0.900 24 C -0.213 4.213 25 N -0.563 5.563 26 Si 0.814 3.186 27 H -0.196 1.196 28 H -0.199 1.199 29 H -0.196 1.196 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.250 0.750 38 H 0.105 0.895 39 H 0.163 0.837 40 H 0.137 0.863 41 H 0.153 0.847 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.167 0.833 46 H 0.074 0.926 47 H 0.117 0.883 48 H 0.227 0.773 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.954 3.976 20.101 20.513 hybrid contribution 1.089 0.031 -1.444 1.809 sum 2.043 4.006 18.657 19.191 Atomic orbital electron populations 1.21608 0.94997 1.01148 1.02138 1.21555 0.96922 0.94267 1.02632 1.22029 0.90219 0.97501 0.92487 0.86531 1.22148 0.96494 0.82900 1.02518 1.45850 1.06957 1.10477 1.73106 1.20979 0.82566 0.91204 0.75857 1.90703 1.56660 1.47390 1.49876 1.22019 0.82174 0.93571 1.02369 0.85354 1.22748 1.00501 0.98389 0.92717 1.22426 0.94197 1.00836 1.00671 1.21832 0.87936 0.79687 0.81208 1.90692 1.16922 1.68627 1.70184 1.48039 1.08599 1.37844 1.39455 1.21658 0.98699 0.94525 0.90711 1.60215 1.61740 1.06895 1.00299 1.21533 0.97361 0.99351 0.88635 1.20828 0.84212 0.86590 0.85571 1.90489 1.40751 1.31630 1.87471 1.41955 1.43944 1.30190 1.05148 1.19635 1.28296 1.13504 0.84704 0.90009 1.26019 0.96259 0.97043 1.01956 1.69674 1.33439 1.25441 1.27745 0.85023 0.78544 0.78244 0.76780 1.19556 1.19867 1.19621 0.93621 0.92998 0.91804 0.92703 0.89463 0.92846 0.90083 0.74976 0.89464 0.83749 0.86308 0.84724 0.90888 0.91449 0.91493 0.83288 0.92605 0.88287 0.77346 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.85 71.98 0.71 -1.89 16 2 C -0.12 -1.92 5.25 30.60 0.16 -1.76 16 3 C 0.09 1.41 2.72 44.92 0.12 1.54 16 4 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 5 C 0.09 1.46 4.55 86.38 0.39 1.86 16 6 N -0.71 -11.07 5.36 -463.07 -2.48 -13.55 16 7 C 0.51 10.25 6.69 87.66 0.59 10.83 16 8 O -0.57 -16.45 14.47 -3.03 -0.04 -16.49 16 9 C 0.11 1.64 3.72 44.76 0.17 1.80 16 10 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 11 C -0.11 -0.84 6.67 31.72 0.21 -0.63 16 12 C -0.14 -1.61 6.86 30.59 0.21 -1.40 16 13 C 0.50 12.02 8.02 87.90 0.71 12.73 16 14 O -0.58 -19.41 17.35 -3.02 -0.05 -19.46 16 15 N -0.61 -13.94 3.00 -822.73 -2.47 -16.40 16 16 C 0.09 2.22 10.49 127.77 1.34 3.56 16 17 N -0.66 -15.87 5.36 -495.57 -2.65 -18.52 16 18 C 0.06 1.94 5.38 85.56 0.46 2.40 16 19 C 0.44 19.46 7.82 87.66 0.69 20.14 16 20 O -0.62 -31.35 15.78 -3.07 -0.05 -31.40 16 21 N -0.58 -28.51 5.29 -306.99 -1.62 -30.13 16 22 C -0.33 -18.31 9.68 84.04 0.81 -17.50 16 23 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 25 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16 26 Si 0.99 42.24 29.55 68.60 2.03 44.26 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 29 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 30 H 0.04 1.11 7.63 -2.39 -0.02 1.10 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.07 6.23 -2.39 -0.01 1.05 16 34 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.05 1.18 6.66 -2.39 -0.02 1.17 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.41 4.56 7.19 -92.71 -0.67 3.89 16 38 H 0.09 0.78 7.92 -2.39 -0.02 0.76 16 39 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 1.97 7.53 -2.39 -0.02 1.95 16 43 H 0.07 1.92 6.18 -2.39 -0.01 1.91 16 44 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.35 8.14 7.07 -89.70 -0.63 7.50 16 46 H 0.06 1.62 6.37 -2.39 -0.02 1.61 16 47 H 0.10 2.90 6.26 -2.39 -0.01 2.89 16 48 H 0.39 18.92 7.90 -92.71 -0.73 18.19 16 49 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -79.49 397.55 -1.06 -80.55 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: -1.03 Total: 38.87 kcal Atomic # 6 Polarization: 24.43 SS G_CDS: 7.03 Total: 31.46 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -8.95 Total: -127.80 kcal Atomic # 8 Polarization: -67.20 SS G_CDS: -0.14 Total: -67.35 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -79.49 -1.06 -80.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318563743.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.179 kcal (2) G-P(sol) polarization free energy of solvation -79.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds