Wall clock time and date at job start Sat Apr 11 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47065 * 2 1 4 4 C 1.50702 * 109.47171 * 119.99595 * 2 1 3 5 5 O 1.21276 * 120.00469 * 240.00084 * 4 2 1 6 6 N 1.34780 * 119.99526 * 60.00180 * 4 2 1 7 7 C 1.46503 * 119.99805 * 180.02562 * 6 4 2 8 8 C 1.53354 * 109.41335 * 275.12746 * 7 6 4 9 9 C 1.53195 * 109.14570 * 178.67466 * 8 7 6 10 10 N 1.46926 * 108.89465 * 54.57617 * 9 8 7 11 11 C 1.34774 * 120.63121 * 126.33965 * 10 9 8 12 12 O 1.21582 * 120.00014 * 354.77536 * 11 10 9 13 13 N 1.34782 * 119.99915 * 174.77166 * 11 10 9 14 14 C 1.46498 * 119.99675 * 184.98301 * 13 11 10 15 15 C 1.50704 * 109.47096 * 180.02562 * 14 13 11 16 16 O 1.21297 * 119.99525 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00237 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00284 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99541 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00513 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99619 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00436 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46877 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46952 * 119.99780 * 22 20 18 25 25 H 1.48495 * 109.47301 * 239.99980 * 22 20 18 26 26 C 1.46926 * 118.73722 * 306.32250 * 10 9 8 27 27 C 1.53040 * 109.45930 * 155.00141 * 7 6 4 28 28 H 1.09003 * 109.47171 * 300.00382 * 1 2 3 29 29 H 1.08999 * 109.46858 * 60.00149 * 1 2 3 30 30 H 1.08998 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47443 * 240.00276 * 2 1 3 32 32 H 1.08994 * 109.47496 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47002 * 300.00129 * 3 2 1 34 34 H 1.09003 * 109.47438 * 59.99781 * 3 2 1 35 35 H 0.97005 * 119.99970 * 359.97438 * 6 4 2 36 36 H 1.08994 * 109.45753 * 35.02552 * 7 6 4 37 37 H 1.08997 * 109.68505 * 58.71314 * 8 7 6 38 38 H 1.09002 * 109.47645 * 298.50942 * 8 7 6 39 39 H 1.08999 * 109.58875 * 294.71912 * 9 8 7 40 40 H 1.09002 * 109.58604 * 174.43479 * 9 8 7 41 41 H 0.96993 * 119.99639 * 4.98764 * 13 11 10 42 42 H 1.09007 * 109.47228 * 300.00071 * 14 13 11 43 43 H 1.08998 * 109.47443 * 60.00096 * 14 13 11 44 44 H 0.97006 * 119.99948 * 0.02562 * 17 15 14 45 45 H 0.96998 * 119.99713 * 179.97438 * 21 20 18 46 46 H 1.09010 * 109.58451 * 173.39329 * 26 10 9 47 47 H 1.08999 * 109.58904 * 293.67543 * 26 10 9 48 48 H 1.08993 * 109.50186 * 61.43117 * 27 7 6 49 49 H 1.09004 * 109.52060 * 301.34958 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7296 -0.1210 2.0288 6 7 1.7068 -2.0007 1.4438 7 6 2.1946 -2.6911 2.6403 8 6 3.6019 -3.2395 2.3742 9 6 4.1191 -3.9311 3.6395 10 7 3.1435 -4.9463 4.0595 11 6 3.5250 -6.2229 4.2621 12 8 4.6634 -6.5651 4.0066 13 7 2.6446 -7.1203 4.7480 14 6 3.0866 -8.4791 5.0711 15 6 1.9189 -9.2768 5.5919 16 8 0.8249 -8.7610 5.6836 17 7 2.0899 -10.5634 5.9547 18 6 1.0276 -11.2890 6.4290 19 1 0.0537 -10.8294 6.5114 20 6 1.2040 -12.6153 6.8036 21 7 2.3892 -13.1742 6.7037 22 14 -0.2435 -13.6040 7.4490 23 1 -1.4588 -12.7507 7.4630 24 1 -0.4733 -14.7776 6.5685 25 1 0.0508 -14.0698 8.8280 26 6 1.7442 -4.5431 4.2547 27 6 1.2501 -3.8453 2.9837 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.1488 -2.4720 0.8054 36 1 2.2304 -1.9906 3.4745 37 1 4.2705 -2.4210 2.1078 38 1 3.5629 -3.9590 1.5564 39 1 4.2447 -3.1947 4.4332 40 1 5.0761 -4.4088 3.4295 41 1 1.7183 -6.8664 4.8837 42 1 3.4807 -8.9561 4.1736 43 1 3.8660 -8.4364 5.8319 44 1 2.9647 -10.9760 5.8810 45 1 2.5124 -14.1000 6.9655 46 1 1.1335 -5.4251 4.4483 47 1 1.6757 -3.8585 5.1002 48 1 1.2331 -4.5589 2.1600 49 1 0.2452 -3.4567 3.1491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329234451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:48 Heat of formation + Delta-G solvation = -111.867810 kcal Electronic energy + Delta-G solvation = -29452.290157 eV Core-core repulsion = 25220.936603 eV Total energy + Delta-G solvation = -4231.353554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.73003 -40.01033 -38.41373 -37.53513 -34.89403 -34.81276 -34.51848 -33.73747 -31.50258 -31.27082 -31.23318 -27.70403 -27.47904 -25.52778 -24.47593 -23.51170 -23.20434 -21.20279 -20.33957 -19.68233 -19.44932 -18.47896 -17.92000 -17.42222 -16.55223 -16.16661 -15.77596 -15.64497 -15.52038 -14.84345 -14.70270 -14.51417 -14.45084 -14.34955 -14.05895 -13.96425 -13.59961 -13.41209 -13.30344 -12.97491 -12.77060 -12.65876 -12.38134 -12.19869 -12.12264 -11.88269 -11.64901 -11.63697 -11.56246 -11.52722 -11.20733 -11.15420 -10.98758 -10.42163 -10.33760 -10.07317 -9.96263 -9.65926 -9.37916 -8.96820 -8.64026 -8.49503 -8.11118 -6.52563 -3.94624 2.31369 2.65523 2.79067 3.09151 3.21514 3.27958 3.34603 3.73776 3.95631 4.12835 4.20390 4.33753 4.42787 4.47569 4.56157 4.70897 4.85581 4.88190 4.91217 5.00827 5.13545 5.13858 5.16281 5.22716 5.29076 5.38644 5.44101 5.49264 5.51783 5.59103 5.66569 5.70651 5.74396 5.83264 5.92078 5.96381 6.00548 6.07184 6.15012 6.45503 6.73865 7.00297 7.14201 7.45057 7.89348 7.91475 8.13078 8.43864 8.75244 9.03548 9.38470 9.86091 10.64354 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025745 B = 0.001784 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.329726 B =15688.737777 C =16480.914865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.133 4.133 4 C 0.516 3.484 5 O -0.538 6.538 6 N -0.727 5.727 7 C 0.145 3.855 8 C -0.143 4.143 9 C 0.133 3.867 10 N -0.632 5.632 11 C 0.709 3.291 12 O -0.595 6.595 13 N -0.725 5.725 14 C 0.127 3.873 15 C 0.429 3.571 16 O -0.599 6.599 17 N -0.549 5.549 18 C -0.305 4.305 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.894 5.894 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.114 3.886 27 C -0.141 4.141 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.400 0.600 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.406 0.594 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.396 0.604 45 H 0.274 0.726 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 23.788 -13.080 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.191 4.191 4 C 0.303 3.697 5 O -0.414 6.414 6 N -0.378 5.378 7 C 0.041 3.959 8 C -0.182 4.182 9 C 0.010 3.990 10 N -0.371 5.371 11 C 0.410 3.590 12 O -0.473 6.473 13 N -0.384 5.384 14 C -0.001 4.001 15 C 0.215 3.785 16 O -0.486 6.486 17 N -0.183 5.183 18 C -0.434 4.434 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.759 3.241 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.010 4.010 27 C -0.180 4.180 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.234 0.766 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.246 0.754 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.230 0.770 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.308 24.058 -12.531 27.158 hybrid contribution -0.881 -1.054 -0.022 1.373 sum -2.189 23.005 -12.553 26.298 Atomic orbital electron populations 1.21795 0.92834 1.02526 1.03059 1.21330 0.97637 0.98179 0.96635 1.21612 1.01840 0.93481 1.02128 1.20730 0.79818 0.81549 0.87620 1.90707 1.37631 1.66166 1.46918 1.46146 1.53853 1.12134 1.25645 1.21031 0.93243 0.93528 0.88115 1.22380 0.96563 1.00485 0.98784 1.21377 0.92984 0.89497 0.95179 1.47226 1.09243 1.07526 1.73084 1.15748 0.84566 0.80293 0.78376 1.90892 1.19172 1.78511 1.58764 1.44967 1.13149 1.11404 1.68919 1.20799 0.96457 0.81683 1.01205 1.19756 0.89486 0.83700 0.85596 1.90481 1.26635 1.70518 1.60985 1.41794 1.12575 1.08920 1.55054 1.19778 0.91326 0.93063 1.39263 0.87626 1.25329 0.97968 0.97116 0.97326 1.69626 1.22015 1.14439 1.47315 0.85756 0.80744 0.79264 0.78302 1.19159 1.20629 1.20613 1.21578 0.82249 1.00363 0.96858 1.22204 0.99245 0.97338 0.99238 0.91982 0.91334 0.92116 0.88539 0.91930 0.92054 0.91908 0.76601 0.89136 0.90275 0.91215 0.91541 0.88399 0.75428 0.89965 0.90049 0.77002 0.91636 0.89186 0.90863 0.90625 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.59 9.09 37.16 0.34 -0.25 16 2 C -0.12 -0.66 3.26 -91.77 -0.30 -0.96 16 3 C -0.13 -0.83 8.48 37.16 0.32 -0.51 16 4 C 0.52 4.42 7.12 -10.98 -0.08 4.35 16 5 O -0.54 -6.77 15.64 5.56 0.09 -6.68 16 6 N -0.73 -4.98 4.97 -53.61 -0.27 -5.25 16 7 C 0.15 1.19 2.42 -67.72 -0.16 1.03 16 8 C -0.14 -1.33 5.68 -26.45 -0.15 -1.48 16 9 C 0.13 1.47 6.43 -3.71 -0.02 1.45 16 10 N -0.63 -7.88 2.97 -178.49 -0.53 -8.41 16 11 C 0.71 11.67 8.29 -86.91 -0.72 10.95 16 12 O -0.59 -11.68 15.77 5.29 0.08 -11.60 16 13 N -0.72 -12.24 5.44 -66.41 -0.36 -12.60 16 14 C 0.13 2.36 6.16 -5.19 -0.03 2.33 16 15 C 0.43 9.75 7.85 -10.99 -0.09 9.66 16 16 O -0.60 -15.06 15.24 5.54 0.08 -14.98 16 17 N -0.55 -13.50 5.29 -10.96 -0.06 -13.56 16 18 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 19 H 0.11 2.96 7.16 -52.48 -0.38 2.59 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.72 13.05 55.50 0.72 -23.00 16 22 Si 0.93 20.35 29.55 -169.99 -5.02 15.33 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.11 1.09 6.39 -3.71 -0.02 1.07 16 27 C -0.14 -1.05 5.55 -26.61 -0.15 -1.20 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.19 7.56 -51.93 -0.39 -0.20 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.46 8.10 -51.93 -0.42 0.03 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 35 H 0.40 1.81 8.02 -40.82 -0.33 1.48 16 36 H 0.09 0.88 7.58 -51.93 -0.39 0.48 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 1.24 6.99 -51.93 -0.36 0.87 16 41 H 0.41 6.61 4.93 -40.82 -0.20 6.41 16 42 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.40 9.40 7.90 -40.82 -0.32 9.08 16 45 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 46 H 0.09 0.93 5.65 -51.92 -0.29 0.64 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 399.14 15.07 6.01 6.01 Total: -1.00 -33.67 399.14 -8.28 -41.95 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -7.72 Total: 14.14 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: -1.31 Total: 18.63 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -0.49 Total: -62.81 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: 0.25 Total: -33.25 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.67 -8.28 -41.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329234451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.920 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds