Wall clock time and date at job start Sat Apr 11 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47065 * 2 1 4 4 C 1.50702 * 109.47171 * 119.99595 * 2 1 3 5 5 O 1.21276 * 120.00469 * 240.00084 * 4 2 1 6 6 N 1.34780 * 119.99526 * 60.00180 * 4 2 1 7 7 C 1.46503 * 119.99805 * 180.02562 * 6 4 2 8 8 C 1.53354 * 109.41335 * 275.12746 * 7 6 4 9 9 C 1.53195 * 109.14570 * 178.67466 * 8 7 6 10 10 N 1.46926 * 108.89465 * 54.57617 * 9 8 7 11 11 C 1.34774 * 120.63121 * 126.33965 * 10 9 8 12 12 O 1.21582 * 120.00014 * 354.77536 * 11 10 9 13 13 N 1.34782 * 119.99915 * 174.77166 * 11 10 9 14 14 C 1.46498 * 119.99675 * 184.98301 * 13 11 10 15 15 C 1.50704 * 109.47096 * 180.02562 * 14 13 11 16 16 O 1.21297 * 119.99525 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00237 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00284 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99541 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00513 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99619 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00436 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46877 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46952 * 119.99780 * 22 20 18 25 25 H 1.48495 * 109.47301 * 239.99980 * 22 20 18 26 26 C 1.46926 * 118.73722 * 306.32250 * 10 9 8 27 27 C 1.53040 * 109.45930 * 155.00141 * 7 6 4 28 28 H 1.09003 * 109.47171 * 300.00382 * 1 2 3 29 29 H 1.08999 * 109.46858 * 60.00149 * 1 2 3 30 30 H 1.08998 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47443 * 240.00276 * 2 1 3 32 32 H 1.08994 * 109.47496 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47002 * 300.00129 * 3 2 1 34 34 H 1.09003 * 109.47438 * 59.99781 * 3 2 1 35 35 H 0.97005 * 119.99970 * 359.97438 * 6 4 2 36 36 H 1.08994 * 109.45753 * 35.02552 * 7 6 4 37 37 H 1.08997 * 109.68505 * 58.71314 * 8 7 6 38 38 H 1.09002 * 109.47645 * 298.50942 * 8 7 6 39 39 H 1.08999 * 109.58875 * 294.71912 * 9 8 7 40 40 H 1.09002 * 109.58604 * 174.43479 * 9 8 7 41 41 H 0.96993 * 119.99639 * 4.98764 * 13 11 10 42 42 H 1.09007 * 109.47228 * 300.00071 * 14 13 11 43 43 H 1.08998 * 109.47443 * 60.00096 * 14 13 11 44 44 H 0.97006 * 119.99948 * 0.02562 * 17 15 14 45 45 H 0.96998 * 119.99713 * 179.97438 * 21 20 18 46 46 H 1.09010 * 109.58451 * 173.39329 * 26 10 9 47 47 H 1.08999 * 109.58904 * 293.67543 * 26 10 9 48 48 H 1.08993 * 109.50186 * 61.43117 * 27 7 6 49 49 H 1.09004 * 109.52060 * 301.34958 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7296 -0.1210 2.0288 6 7 1.7068 -2.0007 1.4438 7 6 2.1946 -2.6911 2.6403 8 6 3.6019 -3.2395 2.3742 9 6 4.1191 -3.9311 3.6395 10 7 3.1435 -4.9463 4.0595 11 6 3.5250 -6.2229 4.2621 12 8 4.6634 -6.5651 4.0066 13 7 2.6446 -7.1203 4.7480 14 6 3.0866 -8.4791 5.0711 15 6 1.9189 -9.2768 5.5919 16 8 0.8249 -8.7610 5.6836 17 7 2.0899 -10.5634 5.9547 18 6 1.0276 -11.2890 6.4290 19 1 0.0537 -10.8294 6.5114 20 6 1.2040 -12.6153 6.8036 21 7 2.3892 -13.1742 6.7037 22 14 -0.2435 -13.6040 7.4490 23 1 -1.4588 -12.7507 7.4630 24 1 -0.4733 -14.7776 6.5685 25 1 0.0508 -14.0698 8.8280 26 6 1.7442 -4.5431 4.2547 27 6 1.2501 -3.8453 2.9837 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.1488 -2.4720 0.8054 36 1 2.2304 -1.9906 3.4745 37 1 4.2705 -2.4210 2.1078 38 1 3.5629 -3.9590 1.5564 39 1 4.2447 -3.1947 4.4332 40 1 5.0761 -4.4088 3.4295 41 1 1.7183 -6.8664 4.8837 42 1 3.4807 -8.9561 4.1736 43 1 3.8660 -8.4364 5.8319 44 1 2.9647 -10.9760 5.8810 45 1 2.5124 -14.1000 6.9655 46 1 1.1335 -5.4251 4.4483 47 1 1.6757 -3.8585 5.1002 48 1 1.2331 -4.5589 2.1600 49 1 0.2452 -3.4567 3.1491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329234451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:47 Heat of formation + Delta-G solvation = -136.703386 kcal Electronic energy + Delta-G solvation = -29453.367108 eV Core-core repulsion = 25220.936603 eV Total energy + Delta-G solvation = -4232.430506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.71370 -40.95658 -40.11467 -38.59589 -36.26677 -35.72981 -35.43805 -35.30945 -33.37210 -32.25417 -32.06591 -29.16698 -27.96318 -26.71320 -25.94701 -24.33587 -23.95517 -22.11065 -21.37965 -21.09118 -20.51535 -20.09301 -19.39127 -18.05016 -17.62616 -17.27490 -17.13775 -16.97064 -16.55111 -16.27971 -16.01983 -15.84490 -15.44433 -15.28524 -15.24380 -14.87852 -14.80161 -14.37537 -14.28713 -13.92661 -13.66168 -13.54131 -13.50227 -13.36617 -13.15135 -13.02183 -12.90494 -12.80353 -12.43325 -12.33046 -12.10219 -12.05938 -11.98902 -11.95423 -11.78233 -11.56959 -11.30601 -10.74620 -10.54574 -10.32490 -10.08643 -10.07457 -9.59161 -8.50118 -6.00242 1.36007 1.42846 1.49220 1.59012 1.66506 1.89825 2.03044 2.21428 2.28678 2.80567 3.15498 3.17290 3.57997 3.73861 3.77642 3.98323 4.00736 4.05387 4.09941 4.20848 4.25209 4.33561 4.43165 4.44069 4.46477 4.56467 4.69802 4.74186 4.78043 4.81186 4.90435 4.92027 4.95042 5.00920 5.09478 5.21924 5.30488 5.32846 5.34405 5.39956 5.49384 5.50902 5.83784 5.93297 6.48640 6.57774 6.87389 7.04441 7.28580 7.41331 7.49056 7.94969 8.66978 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025745 B = 0.001784 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.329726 B =15688.737777 C =16480.914865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.133 4.133 4 C 0.512 3.488 5 O -0.584 6.584 6 N -0.714 5.714 7 C 0.150 3.850 8 C -0.132 4.132 9 C 0.133 3.867 10 N -0.624 5.624 11 C 0.707 3.293 12 O -0.630 6.630 13 N -0.724 5.724 14 C 0.140 3.860 15 C 0.435 3.565 16 O -0.623 6.623 17 N -0.559 5.559 18 C -0.336 4.336 19 H 0.088 0.912 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.269 1.269 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.107 3.893 27 C -0.130 4.130 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.414 0.586 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.409 0.591 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.399 0.601 45 H 0.279 0.721 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.078 0.922 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 24.222 -14.079 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.191 4.191 4 C 0.300 3.700 5 O -0.463 6.463 6 N -0.365 5.365 7 C 0.045 3.955 8 C -0.171 4.171 9 C 0.009 3.991 10 N -0.361 5.361 11 C 0.408 3.592 12 O -0.512 6.512 13 N -0.384 5.384 14 C 0.011 3.989 15 C 0.222 3.778 16 O -0.511 6.511 17 N -0.194 5.194 18 C -0.465 4.465 19 H 0.106 0.894 20 C -0.212 4.212 21 N -0.556 5.556 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.197 1.197 25 H -0.198 1.198 26 C -0.016 4.016 27 C -0.168 4.168 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.251 0.749 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.250 0.750 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.233 0.767 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.822 24.515 -13.561 28.158 hybrid contribution -0.393 -1.094 0.267 1.193 sum -3.215 23.421 -13.294 27.122 Atomic orbital electron populations 1.21798 0.91303 1.03514 1.03258 1.21373 0.98757 0.97406 0.95737 1.21618 1.00862 0.94218 1.02394 1.21319 0.78993 0.81746 0.87959 1.90690 1.39788 1.67208 1.48655 1.46019 1.53420 1.11719 1.25392 1.20882 0.92758 0.93517 0.88355 1.22252 0.97275 0.99934 0.97650 1.21450 0.92045 0.89138 0.96434 1.47281 1.10772 1.06234 1.71832 1.15856 0.83890 0.81255 0.78205 1.90867 1.20563 1.79437 1.60294 1.44877 1.13439 1.10850 1.69247 1.20598 0.94580 0.82107 1.01575 1.20366 0.90156 0.83245 0.84040 1.90458 1.28103 1.70955 1.61574 1.41838 1.12279 1.09569 1.55758 1.19787 0.91383 0.94094 1.41256 0.89433 1.26132 1.00562 0.97526 0.96947 1.69692 1.23444 1.14970 1.47522 0.84802 0.77431 0.77691 0.77991 1.19336 1.19712 1.19756 1.21815 0.80355 1.00650 0.98734 1.22120 0.99956 0.96719 0.98050 0.93125 0.89818 0.90747 0.86463 0.93489 0.89883 0.93501 0.74868 0.90333 0.90809 0.91417 0.90401 0.90243 0.74987 0.89137 0.89142 0.76729 0.91116 0.89693 0.89364 0.90377 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.09 71.98 0.65 -0.14 16 2 C -0.11 -1.05 3.26 -11.54 -0.04 -1.08 16 3 C -0.13 -1.54 8.48 71.98 0.61 -0.93 16 4 C 0.51 8.17 7.12 87.66 0.62 8.80 16 5 O -0.58 -14.69 15.64 -3.02 -0.05 -14.74 16 6 N -0.71 -8.38 4.97 -441.91 -2.20 -10.58 16 7 C 0.15 2.22 2.42 45.12 0.11 2.33 16 8 C -0.13 -2.34 5.68 30.78 0.17 -2.17 16 9 C 0.13 2.86 6.43 86.36 0.56 3.42 16 10 N -0.62 -15.01 2.97 -836.89 -2.49 -17.50 16 11 C 0.71 22.94 8.29 179.05 1.49 24.43 16 12 O -0.63 -24.77 15.77 -3.97 -0.06 -24.84 16 13 N -0.72 -24.04 5.44 -482.29 -2.62 -26.67 16 14 C 0.14 5.16 6.16 85.63 0.53 5.68 16 15 C 0.43 19.81 7.85 87.66 0.69 20.50 16 16 O -0.62 -31.39 15.24 -3.08 -0.05 -31.43 16 17 N -0.56 -27.79 5.29 -306.98 -1.62 -29.41 16 18 C -0.34 -18.28 9.68 84.04 0.81 -17.47 16 19 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 20 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 21 N -0.92 -48.35 13.05 21.66 0.28 -48.07 16 22 Si 1.00 41.28 29.55 68.60 2.03 43.31 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 26 C 0.11 1.89 6.39 86.36 0.55 2.44 16 27 C -0.13 -1.63 5.55 30.67 0.17 -1.46 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.07 0.22 7.56 -2.39 -0.02 0.20 16 31 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 33 H 0.08 0.57 8.14 -2.38 -0.02 0.56 16 34 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 35 H 0.41 2.54 8.02 -92.70 -0.74 1.80 16 36 H 0.08 1.42 7.58 -2.39 -0.02 1.41 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 2.04 6.99 -2.39 -0.02 2.02 16 41 H 0.41 13.05 4.93 -92.71 -0.46 12.60 16 42 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 43 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 44 H 0.40 19.14 7.90 -92.70 -0.73 18.40 16 45 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 46 H 0.08 1.63 5.65 -2.38 -0.01 1.61 16 47 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -73.16 399.14 -0.32 -73.49 By element: Atomic # 1 Polarization: 43.14 SS G_CDS: -0.94 Total: 42.20 kcal Atomic # 6 Polarization: 36.85 SS G_CDS: 7.39 Total: 44.24 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -8.65 Total: -132.23 kcal Atomic # 8 Polarization: -70.85 SS G_CDS: -0.16 Total: -71.01 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -73.16 -0.32 -73.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329234451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.217 kcal (2) G-P(sol) polarization free energy of solvation -73.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds