Wall clock time and date at job start Sat Apr 11 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46767 * 2 1 4 4 N 1.46500 * 109.46553 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00181 * 269.99544 * 4 3 2 6 6 O 1.21281 * 120.00131 * 180.02562 * 5 4 3 7 7 C 1.50703 * 119.99874 * 0.02562 * 5 4 3 8 8 C 1.50692 * 109.47176 * 179.97438 * 7 5 4 9 9 N 1.34779 * 120.00033 * 179.97438 * 8 7 5 10 10 O 1.21277 * 120.00338 * 359.97438 * 8 7 5 11 11 C 1.46498 * 120.00001 * 90.00491 * 4 3 2 12 12 H 1.09003 * 110.62973 * 356.89188 * 11 4 3 13 13 C 1.55139 * 110.85623 * 233.68019 * 11 4 3 14 14 C 1.54904 * 101.65629 * 205.89261 * 13 11 4 15 15 N 1.47843 * 104.79405 * 37.06983 * 14 13 11 16 16 C 1.46900 * 110.99888 * 213.63369 * 15 14 13 17 17 C 1.50691 * 109.47193 * 290.84246 * 16 15 14 18 18 O 1.21291 * 120.00247 * 0.02562 * 17 16 15 19 19 N 1.34785 * 119.99768 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99773 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99723 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99652 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00438 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99773 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47127 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46945 * 119.99876 * 24 22 20 27 27 H 1.48505 * 109.47314 * 239.99999 * 24 22 20 28 28 C 1.47446 * 108.56761 * 335.90448 * 15 14 13 29 29 H 1.08999 * 109.47184 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47565 * 300.00023 * 1 2 3 31 31 H 1.09006 * 109.47000 * 60.00300 * 1 2 3 32 32 H 1.08999 * 109.47256 * 240.00326 * 2 1 3 33 33 H 1.08997 * 109.46964 * 119.99852 * 2 1 3 34 34 H 1.08999 * 109.46966 * 60.00149 * 3 2 1 35 35 H 1.08997 * 109.47258 * 299.99672 * 3 2 1 36 36 H 1.09001 * 109.47030 * 299.99751 * 7 5 4 37 37 H 1.09005 * 109.46941 * 59.99432 * 7 5 4 38 38 H 0.97004 * 119.99878 * 0.02562 * 9 8 7 39 39 H 0.96999 * 120.00183 * 179.97438 * 9 8 7 40 40 H 1.09005 * 110.98834 * 323.98805 * 13 11 4 41 41 H 1.09000 * 110.99151 * 87.76243 * 13 11 4 42 42 H 1.08998 * 110.37178 * 278.24131 * 14 13 11 43 43 H 1.09003 * 110.37142 * 155.89745 * 14 13 11 44 44 H 1.08998 * 109.47082 * 50.84605 * 16 15 14 45 45 H 1.09000 * 109.46598 * 170.84099 * 16 15 14 46 46 H 0.96996 * 119.99808 * 0.02562 * 19 17 16 47 47 H 0.97002 * 120.00786 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.88511 * 120.39826 * 28 15 14 49 49 H 1.08994 * 109.88544 * 241.58152 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1784 1.4428 1.1681 6 8 5.3912 1.4432 1.1686 7 6 3.4243 1.4425 2.4729 8 6 4.4031 1.4422 3.6187 9 7 3.9533 1.4425 4.8892 10 8 5.5955 1.4418 3.3977 11 6 4.2380 1.4424 -1.2678 12 1 3.5482 1.3871 -2.1100 13 6 5.2577 0.2743 -1.3163 14 6 6.3146 0.8225 -2.3073 15 7 6.4007 2.2674 -2.0063 16 6 6.6718 3.0434 -3.2237 17 6 8.0737 2.7601 -3.6984 18 8 8.7776 1.9872 -3.0833 19 7 8.5449 3.3647 -4.8070 20 6 9.8201 3.1064 -5.2392 21 1 10.4472 2.4189 -4.6910 22 6 10.3061 3.7301 -6.3817 23 7 9.5433 4.5670 -7.0484 24 14 12.0439 3.3788 -6.9702 25 1 12.6907 2.4076 -6.0516 26 1 11.9966 2.8077 -8.3402 27 1 12.8256 4.6414 -6.9868 28 6 5.1358 2.6925 -1.3792 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 2.7974 2.3323 2.5304 37 1 2.7978 0.5523 2.5303 38 1 2.9995 1.4425 5.0661 39 1 4.5833 1.4419 5.6268 40 1 5.6972 0.0987 -0.3343 41 1 4.7937 -0.6334 -1.7021 42 1 5.9870 0.6678 -3.3353 43 1 7.2782 0.3416 -2.1387 44 1 5.9611 2.7610 -4.0004 45 1 6.5695 4.1068 -3.0070 46 1 7.9818 3.9824 -5.2991 47 1 9.8826 5.0027 -7.8459 48 1 5.3320 3.0979 -0.3867 49 1 4.6489 3.4447 -1.9998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481393587.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:03 Heat of formation + Delta-G solvation = -90.708352 kcal Electronic energy + Delta-G solvation = -30450.406633 eV Core-core repulsion = 26219.970622 eV Total energy + Delta-G solvation = -4230.436011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.85322 -39.37537 -38.37210 -37.04892 -36.32084 -33.88710 -33.82714 -33.14890 -31.58606 -31.06308 -30.10846 -28.27585 -26.69633 -26.02613 -24.14919 -22.66984 -21.92190 -20.98032 -20.77836 -19.06795 -18.97731 -17.79720 -17.61466 -17.54417 -16.71799 -16.10219 -16.00618 -15.75987 -15.21164 -15.03070 -14.59393 -14.43433 -14.30109 -14.00901 -13.87215 -13.71187 -13.55807 -13.28185 -13.00227 -12.79945 -12.64293 -12.56619 -12.31143 -11.91476 -11.85556 -11.70663 -11.41394 -11.39953 -11.23599 -11.18130 -11.00080 -10.79643 -10.61219 -10.26310 -10.19000 -10.12381 -9.90627 -9.40051 -9.28661 -8.76957 -8.27745 -7.85189 -7.62304 -6.31696 -3.71665 2.40123 2.57934 2.63724 3.23543 3.32172 3.33203 3.41535 4.04413 4.10211 4.18872 4.37299 4.40073 4.48892 4.56749 4.70704 4.78527 4.80299 4.90777 4.96738 4.99112 5.05671 5.15796 5.25867 5.32294 5.34601 5.49124 5.56616 5.61797 5.64087 5.72916 5.81667 5.91015 5.98526 6.04547 6.08437 6.32925 6.43483 6.51772 6.66697 6.71433 7.00792 7.24137 7.46980 7.50343 7.65361 8.04066 8.18273 8.23239 8.74354 9.29756 9.66764 10.20053 10.86598 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017308 B = 0.002310 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.358831 B =12117.556644 C =13194.305059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.145 4.145 3 C 0.107 3.893 4 N -0.610 5.610 5 C 0.505 3.495 6 O -0.463 6.463 7 C -0.167 4.167 8 C 0.511 3.489 9 N -0.863 5.863 10 O -0.488 6.488 11 C 0.131 3.869 12 H 0.091 0.909 13 C -0.145 4.145 14 C 0.060 3.940 15 N -0.495 5.495 16 C 0.040 3.960 17 C 0.447 3.553 18 O -0.572 6.572 19 N -0.570 5.570 20 C -0.293 4.293 21 H 0.103 0.897 22 C 0.019 3.981 23 N -0.905 5.905 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.283 1.283 27 H -0.282 1.282 28 C 0.039 3.961 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.397 0.603 39 H 0.402 0.598 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.038 0.962 43 H 0.094 0.906 44 H 0.046 0.954 45 H 0.086 0.914 46 H 0.391 0.609 47 H 0.269 0.731 48 H 0.085 0.915 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.708 -6.014 18.144 32.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C -0.016 4.016 4 N -0.346 5.346 5 C 0.290 3.710 6 O -0.332 6.332 7 C -0.210 4.210 8 C 0.293 3.707 9 N -0.429 5.429 10 O -0.359 6.359 11 C 0.026 3.974 12 H 0.110 0.890 13 C -0.183 4.183 14 C -0.068 4.068 15 N -0.219 5.219 16 C -0.092 4.092 17 C 0.232 3.768 18 O -0.455 6.455 19 N -0.208 5.208 20 C -0.423 4.423 21 H 0.121 0.879 22 C -0.182 4.182 23 N -0.548 5.548 24 Si 0.755 3.245 25 H -0.192 1.192 26 H -0.209 1.209 27 H -0.208 1.208 28 C -0.090 4.090 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.225 0.775 39 H 0.233 0.767 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.224 0.776 47 H 0.079 0.921 48 H 0.103 0.897 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.279 -6.325 18.376 31.099 hybrid contribution -0.790 0.240 -0.941 1.251 sum -25.069 -6.085 17.435 31.136 Atomic orbital electron populations 1.21714 0.95023 1.02114 1.02003 1.22012 0.96115 0.97240 1.03019 1.21702 0.79656 0.96877 1.03375 1.47919 1.06037 1.75070 1.05530 1.19906 0.88358 0.78426 0.84314 1.90958 1.12456 1.43942 1.85863 1.21680 0.99659 1.06174 0.93443 1.20040 0.89669 0.77008 0.83991 1.43872 1.11638 1.79716 1.07670 1.90971 1.16005 1.45188 1.83731 1.22338 0.93544 0.96893 0.84592 0.89049 1.23194 0.96092 0.96323 1.02737 1.22913 0.99892 0.88112 0.95846 1.63198 1.30696 1.03300 1.24685 1.22136 0.96701 0.98971 0.91360 1.19771 0.88509 0.85366 0.83118 1.90524 1.59274 1.38558 1.57144 1.41869 1.14606 1.40827 1.23466 1.19748 0.89868 1.24601 1.08070 0.87938 1.25232 0.99923 0.96456 0.96540 1.69620 1.37000 1.29310 1.18821 0.85819 0.81976 0.78227 0.78437 1.19243 1.20883 1.20825 1.23160 0.88942 0.95751 1.01155 0.92413 0.92569 0.92429 0.91284 0.91798 0.90410 0.90127 0.86369 0.86433 0.77506 0.76656 0.88229 0.91611 0.94382 0.88790 0.93604 0.89572 0.77615 0.92097 0.89672 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.91 37.16 0.37 -0.13 16 2 C -0.15 -0.68 6.26 -26.73 -0.17 -0.85 16 3 C 0.11 0.56 5.19 -4.04 -0.02 0.54 16 4 N -0.61 -5.80 2.54 -164.04 -0.42 -6.22 16 5 C 0.51 5.97 6.78 -10.98 -0.07 5.90 16 6 O -0.46 -8.22 10.54 -18.96 -0.20 -8.42 16 7 C -0.17 -1.15 4.74 -29.04 -0.14 -1.28 16 8 C 0.51 5.12 8.09 -10.99 -0.09 5.03 16 9 N -0.86 -4.42 8.87 31.22 0.28 -4.14 16 10 O -0.49 -8.18 15.02 -18.96 -0.28 -8.46 16 11 C 0.13 1.57 3.42 -66.11 -0.23 1.34 16 12 H 0.09 0.90 7.89 -51.93 -0.41 0.49 16 13 C -0.14 -2.10 6.38 -24.60 -0.16 -2.26 16 14 C 0.06 1.09 5.74 -2.30 -0.01 1.08 16 15 N -0.49 -9.54 4.86 -232.70 -1.13 -10.67 16 16 C 0.04 0.79 5.05 -4.98 -0.03 0.76 16 17 C 0.45 11.36 7.58 -10.99 -0.08 11.28 16 18 O -0.57 -16.68 14.61 5.55 0.08 -16.59 16 19 N -0.57 -15.24 5.29 -10.96 -0.06 -15.30 16 20 C -0.29 -8.55 9.68 -14.93 -0.14 -8.70 16 21 H 0.10 3.15 7.16 -52.49 -0.38 2.77 16 22 C 0.02 0.54 5.50 -17.47 -0.10 0.44 16 23 N -0.91 -25.50 13.05 55.50 0.72 -24.78 16 24 Si 0.93 21.93 29.55 -169.99 -5.02 16.91 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.04 0.59 6.13 -2.84 -0.02 0.57 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.30 7.22 -51.93 -0.37 -0.07 16 34 H 0.08 0.23 6.44 -51.93 -0.33 -0.10 16 35 H 0.08 0.38 7.98 -51.93 -0.41 -0.04 16 36 H 0.12 0.43 7.40 -51.93 -0.38 0.05 16 37 H 0.12 0.45 7.19 -51.93 -0.37 0.07 16 38 H 0.40 0.49 8.83 -40.82 -0.36 0.13 16 39 H 0.40 1.99 8.93 -40.82 -0.36 1.62 16 40 H 0.10 1.73 5.71 -51.93 -0.30 1.43 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.04 0.66 7.62 -51.93 -0.40 0.26 16 43 H 0.09 2.02 7.38 -51.93 -0.38 1.64 16 44 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 45 H 0.09 1.56 8.03 -51.93 -0.42 1.14 16 46 H 0.39 9.94 7.90 -40.82 -0.32 9.62 16 47 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.09 1.47 6.40 -51.93 -0.33 1.13 16 49 H 0.05 0.66 7.55 -51.93 -0.39 0.27 16 LS Contribution 392.61 15.07 5.92 5.92 Total: -1.00 -40.44 392.61 -8.59 -49.03 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.59 Total: 9.01 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: -0.88 Total: 13.72 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.60 Total: -61.10 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.40 Total: -33.48 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -40.44 -8.59 -49.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481393587.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.679 kcal (2) G-P(sol) polarization free energy of solvation -40.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds