Wall clock time and date at job start Sat Apr 11 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 109.46656 * 2 1 4 4 N 1.46495 * 109.46797 * 174.64678 * 3 2 1 5 5 C 1.34770 * 120.00375 * 275.44301 * 4 3 2 6 6 O 1.21284 * 120.00399 * 184.88744 * 5 4 3 7 7 C 1.50703 * 120.00011 * 4.88800 * 5 4 3 8 8 C 1.50701 * 109.47203 * 180.02562 * 7 5 4 9 9 N 1.34780 * 119.99809 * 180.02562 * 8 7 5 10 10 O 1.21280 * 120.00367 * 0.02562 * 8 7 5 11 11 C 1.46508 * 119.99651 * 95.44328 * 4 3 2 12 12 H 1.09000 * 110.34919 * 176.67079 * 11 4 3 13 13 C 1.54595 * 110.30794 * 298.81205 * 11 4 3 14 14 C 1.54941 * 102.91847 * 96.96116 * 13 11 4 15 15 N 1.48534 * 103.22628 * 37.41445 * 14 13 11 16 16 C 1.46895 * 110.99871 * 200.28001 * 15 14 13 17 17 C 1.50707 * 109.46977 * 287.39553 * 16 15 14 18 18 O 1.21285 * 119.99889 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99768 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99924 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00100 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00210 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99889 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00003 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47356 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.46931 * 119.99750 * 24 22 20 27 27 H 1.48502 * 109.47348 * 239.99479 * 24 22 20 28 28 C 1.47901 * 105.81952 * 320.78874 * 15 14 13 29 29 H 1.09005 * 109.47716 * 299.99783 * 1 2 3 30 30 H 1.08999 * 109.47304 * 60.00290 * 1 2 3 31 31 H 1.09007 * 109.46901 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47296 * 240.00098 * 2 1 3 33 33 H 1.08999 * 109.47304 * 119.99710 * 2 1 3 34 34 H 1.08995 * 109.47007 * 54.64971 * 3 2 1 35 35 H 1.08993 * 109.47034 * 294.64915 * 3 2 1 36 36 H 1.09003 * 109.47092 * 300.00441 * 7 5 4 37 37 H 1.09001 * 109.47125 * 59.99964 * 7 5 4 38 38 H 0.97002 * 119.99766 * 359.97438 * 9 8 7 39 39 H 0.97000 * 119.99824 * 180.02562 * 9 8 7 40 40 H 1.09006 * 110.72110 * 215.31432 * 13 11 4 41 41 H 1.08999 * 110.72788 * 338.60237 * 13 11 4 42 42 H 1.09000 * 110.66472 * 278.97414 * 14 13 11 43 43 H 1.09004 * 110.66212 * 155.84433 * 14 13 11 44 44 H 1.09005 * 109.47615 * 47.39226 * 16 15 14 45 45 H 1.08997 * 109.47655 * 167.39705 * 16 15 14 46 46 H 0.97001 * 120.00440 * 0.02562 * 19 17 16 47 47 H 0.96995 * 119.99644 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.91887 * 265.97855 * 28 15 14 49 49 H 1.09004 * 110.08279 * 144.77646 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4992 1.4447 0.1289 5 6 4.0681 1.3711 1.3483 6 8 5.2722 1.4620 1.4623 7 6 3.2083 1.1759 2.5705 8 6 4.0823 1.1281 3.7972 9 7 3.5273 0.9589 5.0138 10 8 5.2849 1.2419 3.6899 11 6 4.3401 1.5267 -1.0681 12 1 5.3926 1.5759 -0.7892 13 6 4.0847 0.3105 -1.9876 14 6 3.0701 0.8635 -3.0197 15 7 3.5334 2.2577 -3.2383 16 6 2.4583 3.0882 -3.7971 17 6 2.2271 2.7085 -5.2371 18 8 2.8922 1.8321 -5.7474 19 7 1.2806 3.3423 -5.9574 20 6 1.0706 2.9973 -7.2676 21 1 1.6634 2.2174 -7.7223 22 6 0.0952 3.6510 -8.0104 23 7 -0.6265 4.5997 -7.4570 24 14 -0.1913 3.1804 -9.7953 25 1 0.7441 2.0919 -10.1766 26 1 -1.5907 2.7134 -9.9656 27 1 0.0451 4.3622 -10.6629 28 6 3.9524 2.7562 -1.9103 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6004 1.9833 0.8382 35 1 1.7569 1.9280 -0.9340 36 1 2.5062 2.0052 2.6570 37 1 2.6561 0.2404 2.4806 38 1 2.5654 0.8683 5.0997 39 1 4.0899 0.9286 5.8035 40 1 5.0059 -0.0004 -2.4806 41 1 3.6502 -0.5150 -1.4237 42 1 2.0602 0.8534 -2.6098 43 1 3.1157 0.2931 -3.9475 44 1 1.5425 2.9285 -3.2278 45 1 2.7433 4.1387 -3.7396 46 1 0.7484 4.0430 -5.5492 47 1 -1.3077 5.0557 -7.9755 48 1 3.1269 3.2865 -1.4354 49 1 4.8101 3.4210 -2.0136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481393588.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:07 Heat of formation + Delta-G solvation = -94.653463 kcal Electronic energy + Delta-G solvation = -30694.038840 eV Core-core repulsion = 26463.431755 eV Total energy + Delta-G solvation = -4230.607084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.93666 -39.62933 -38.48385 -37.49360 -35.94223 -33.98207 -33.92307 -33.18329 -31.70862 -31.16499 -30.26516 -28.44726 -26.90666 -26.11401 -24.22050 -22.61430 -21.96525 -21.09892 -20.57844 -19.35233 -19.05231 -18.05820 -17.84297 -17.67148 -16.58225 -16.27342 -16.13441 -15.93409 -15.05421 -14.97140 -14.82127 -14.71624 -14.44253 -14.20812 -13.85619 -13.81150 -13.66742 -13.50879 -13.10885 -12.64123 -12.57458 -12.52269 -12.19523 -12.13244 -11.93709 -11.79142 -11.49754 -11.44449 -11.24878 -11.16429 -10.89804 -10.84942 -10.78437 -10.36264 -10.34557 -10.22474 -10.00784 -9.61322 -9.50407 -8.83957 -8.48433 -7.99163 -7.92598 -6.41891 -3.82386 2.29048 2.49392 2.54124 3.15910 3.25619 3.26611 3.33846 3.90779 4.03166 4.06589 4.28211 4.44801 4.49413 4.55214 4.64352 4.69730 4.79735 4.83921 4.98394 5.04977 5.09662 5.20381 5.26072 5.27437 5.32946 5.43362 5.45885 5.65240 5.67585 5.71454 5.81075 5.83861 5.91893 5.93210 6.06424 6.14808 6.27595 6.38323 6.41849 6.43077 6.92053 7.14743 7.16951 7.21856 7.55452 7.91857 8.06747 8.08953 8.62240 9.18753 9.54897 10.07048 10.76070 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.002250 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.856656 B =12439.127031 C =12892.014487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.149 4.149 3 C 0.102 3.898 4 N -0.607 5.607 5 C 0.516 3.484 6 O -0.494 6.494 7 C -0.168 4.168 8 C 0.514 3.486 9 N -0.861 5.861 10 O -0.496 6.496 11 C 0.132 3.868 12 H 0.111 0.889 13 C -0.134 4.134 14 C 0.039 3.961 15 N -0.488 5.488 16 C 0.038 3.962 17 C 0.446 3.554 18 O -0.575 6.575 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.025 3.975 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.399 0.601 39 H 0.403 0.597 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.098 0.902 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.391 0.609 47 H 0.270 0.730 48 H 0.049 0.951 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 -6.404 24.236 25.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C -0.021 4.021 4 N -0.341 5.341 5 C 0.301 3.699 6 O -0.366 6.366 7 C -0.211 4.211 8 C 0.296 3.704 9 N -0.427 5.427 10 O -0.368 6.368 11 C 0.028 3.972 12 H 0.129 0.871 13 C -0.173 4.173 14 C -0.088 4.088 15 N -0.213 5.213 16 C -0.094 4.094 17 C 0.231 3.769 18 O -0.459 6.459 19 N -0.204 5.204 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.104 4.104 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.227 0.773 39 H 0.233 0.767 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.117 0.883 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.224 0.776 47 H 0.080 0.920 48 H 0.067 0.933 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.903 -6.696 23.203 24.167 hybrid contribution -1.931 0.341 0.268 1.979 sum -1.028 -6.355 23.471 24.338 Atomic orbital electron populations 1.21726 0.94772 1.02273 1.02219 1.22165 0.96529 0.96931 1.03119 1.21739 0.79576 0.97319 1.03479 1.48066 1.06562 1.73794 1.05712 1.19898 0.88648 0.77546 0.83792 1.90860 1.14115 1.46689 1.84982 1.21718 0.99850 1.06476 0.93037 1.20042 0.88905 0.76818 0.84599 1.43867 1.11956 1.78216 1.08666 1.90923 1.14411 1.45840 1.85578 1.21941 0.96445 0.95001 0.83804 0.87125 1.22977 1.00904 0.96878 0.96551 1.23355 0.95458 0.90243 0.99738 1.64499 1.34972 1.01807 1.19981 1.22063 0.92980 0.98418 0.95943 1.19691 0.83784 0.86030 0.87377 1.90512 1.49568 1.33774 1.71998 1.41868 1.32385 1.34547 1.11593 1.19738 1.17496 1.18938 0.86389 0.87892 1.25252 0.96271 0.96128 1.00399 1.69620 1.23050 1.24187 1.37616 0.85813 0.78135 0.78510 0.81967 1.19226 1.20816 1.20777 1.23278 1.01069 0.96745 0.89259 0.92642 0.92110 0.92251 0.90539 0.91884 0.90604 0.89699 0.86140 0.85986 0.77307 0.76653 0.89637 0.90562 0.94204 0.88336 0.93487 0.89401 0.77583 0.91986 0.93281 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.15 -1.00 5.55 -26.73 -0.15 -1.15 16 3 C 0.10 0.77 3.96 -4.04 -0.02 0.75 16 4 N -0.61 -6.09 2.37 -164.57 -0.39 -6.48 16 5 C 0.52 5.88 7.62 -10.99 -0.08 5.80 16 6 O -0.49 -8.16 13.55 -18.96 -0.26 -8.42 16 7 C -0.17 -1.13 4.84 -29.03 -0.14 -1.27 16 8 C 0.51 4.73 8.09 -10.98 -0.09 4.64 16 9 N -0.86 -3.80 8.87 31.22 0.28 -3.52 16 10 O -0.50 -7.59 15.02 -18.96 -0.28 -7.87 16 11 C 0.13 1.60 3.44 -66.57 -0.23 1.37 16 12 H 0.11 1.52 6.98 -51.93 -0.36 1.16 16 13 C -0.13 -1.64 6.07 -24.87 -0.15 -1.79 16 14 C 0.04 0.58 5.31 -1.90 -0.01 0.57 16 15 N -0.49 -7.89 4.91 -231.89 -1.14 -9.02 16 16 C 0.04 0.65 5.19 -4.97 -0.03 0.63 16 17 C 0.45 10.33 7.61 -10.98 -0.08 10.25 16 18 O -0.58 -15.35 14.64 5.55 0.08 -15.26 16 19 N -0.57 -14.12 5.29 -10.96 -0.06 -14.18 16 20 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 24 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 C 0.03 0.33 5.85 -2.76 -0.02 0.31 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.64 5.30 -51.93 -0.28 0.36 16 33 H 0.06 0.36 6.35 -51.93 -0.33 0.03 16 34 H 0.08 0.39 6.71 -51.93 -0.35 0.04 16 35 H 0.08 0.76 5.23 -51.93 -0.27 0.49 16 36 H 0.12 0.45 7.29 -51.93 -0.38 0.08 16 37 H 0.12 0.49 6.38 -51.93 -0.33 0.16 16 38 H 0.40 0.34 8.83 -40.82 -0.36 -0.02 16 39 H 0.40 1.61 8.93 -40.82 -0.36 1.24 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.08 0.82 6.01 -51.93 -0.31 0.51 16 42 H 0.04 0.54 5.54 -51.93 -0.29 0.25 16 43 H 0.10 1.77 7.10 -51.93 -0.37 1.40 16 44 H 0.05 0.71 7.83 -51.93 -0.41 0.31 16 45 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 46 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 47 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.05 0.58 6.34 -51.93 -0.33 0.25 16 49 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 384.19 15.07 5.79 5.79 Total: -1.00 -37.54 384.19 -8.24 -45.77 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -7.09 Total: 9.18 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -0.87 Total: 11.72 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.58 Total: -56.78 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.46 Total: -31.56 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.54 -8.24 -45.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481393588.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.880 kcal (2) G-P(sol) polarization free energy of solvation -37.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds