Wall clock time and date at job start Sat Apr 11 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 109.46656 * 2 1 4 4 N 1.46495 * 109.46797 * 174.64678 * 3 2 1 5 5 C 1.34770 * 120.00375 * 275.44301 * 4 3 2 6 6 O 1.21284 * 120.00399 * 184.88744 * 5 4 3 7 7 C 1.50703 * 120.00011 * 4.88800 * 5 4 3 8 8 C 1.50701 * 109.47203 * 180.02562 * 7 5 4 9 9 N 1.34780 * 119.99809 * 180.02562 * 8 7 5 10 10 O 1.21280 * 120.00367 * 0.02562 * 8 7 5 11 11 C 1.46508 * 119.99651 * 95.44328 * 4 3 2 12 12 H 1.09000 * 110.34919 * 176.67079 * 11 4 3 13 13 C 1.54595 * 110.30794 * 298.81205 * 11 4 3 14 14 C 1.54941 * 102.91847 * 96.96116 * 13 11 4 15 15 N 1.48534 * 103.22628 * 37.41445 * 14 13 11 16 16 C 1.46895 * 110.99871 * 200.28001 * 15 14 13 17 17 C 1.50707 * 109.46977 * 287.39553 * 16 15 14 18 18 O 1.21285 * 119.99889 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99768 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99924 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00100 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00210 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99889 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00003 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47356 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.46931 * 119.99750 * 24 22 20 27 27 H 1.48502 * 109.47348 * 239.99479 * 24 22 20 28 28 C 1.47901 * 105.81952 * 320.78874 * 15 14 13 29 29 H 1.09005 * 109.47716 * 299.99783 * 1 2 3 30 30 H 1.08999 * 109.47304 * 60.00290 * 1 2 3 31 31 H 1.09007 * 109.46901 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47296 * 240.00098 * 2 1 3 33 33 H 1.08999 * 109.47304 * 119.99710 * 2 1 3 34 34 H 1.08995 * 109.47007 * 54.64971 * 3 2 1 35 35 H 1.08993 * 109.47034 * 294.64915 * 3 2 1 36 36 H 1.09003 * 109.47092 * 300.00441 * 7 5 4 37 37 H 1.09001 * 109.47125 * 59.99964 * 7 5 4 38 38 H 0.97002 * 119.99766 * 359.97438 * 9 8 7 39 39 H 0.97000 * 119.99824 * 180.02562 * 9 8 7 40 40 H 1.09006 * 110.72110 * 215.31432 * 13 11 4 41 41 H 1.08999 * 110.72788 * 338.60237 * 13 11 4 42 42 H 1.09000 * 110.66472 * 278.97414 * 14 13 11 43 43 H 1.09004 * 110.66212 * 155.84433 * 14 13 11 44 44 H 1.09005 * 109.47615 * 47.39226 * 16 15 14 45 45 H 1.08997 * 109.47655 * 167.39705 * 16 15 14 46 46 H 0.97001 * 120.00440 * 0.02562 * 19 17 16 47 47 H 0.96995 * 119.99644 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.91887 * 265.97855 * 28 15 14 49 49 H 1.09004 * 110.08279 * 144.77646 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4992 1.4447 0.1289 5 6 4.0681 1.3711 1.3483 6 8 5.2722 1.4620 1.4623 7 6 3.2083 1.1759 2.5705 8 6 4.0823 1.1281 3.7972 9 7 3.5273 0.9589 5.0138 10 8 5.2849 1.2419 3.6899 11 6 4.3401 1.5267 -1.0681 12 1 5.3926 1.5759 -0.7892 13 6 4.0847 0.3105 -1.9876 14 6 3.0701 0.8635 -3.0197 15 7 3.5334 2.2577 -3.2383 16 6 2.4583 3.0882 -3.7971 17 6 2.2271 2.7085 -5.2371 18 8 2.8922 1.8321 -5.7474 19 7 1.2806 3.3423 -5.9574 20 6 1.0706 2.9973 -7.2676 21 1 1.6634 2.2174 -7.7223 22 6 0.0952 3.6510 -8.0104 23 7 -0.6265 4.5997 -7.4570 24 14 -0.1913 3.1804 -9.7953 25 1 0.7441 2.0919 -10.1766 26 1 -1.5907 2.7134 -9.9656 27 1 0.0451 4.3622 -10.6629 28 6 3.9524 2.7562 -1.9103 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6004 1.9833 0.8382 35 1 1.7569 1.9280 -0.9340 36 1 2.5062 2.0052 2.6570 37 1 2.6561 0.2404 2.4806 38 1 2.5654 0.8683 5.0997 39 1 4.0899 0.9286 5.8035 40 1 5.0059 -0.0004 -2.4806 41 1 3.6502 -0.5150 -1.4237 42 1 2.0602 0.8534 -2.6098 43 1 3.1157 0.2931 -3.9475 44 1 1.5425 2.9285 -3.2278 45 1 2.7433 4.1387 -3.7396 46 1 0.7484 4.0430 -5.5492 47 1 -1.3077 5.0557 -7.9755 48 1 3.1269 3.2865 -1.4354 49 1 4.8101 3.4210 -2.0136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481393588.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:06 Heat of formation + Delta-G solvation = -125.701133 kcal Electronic energy + Delta-G solvation = -30695.385168 eV Core-core repulsion = 26463.431755 eV Total energy + Delta-G solvation = -4231.953412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.80220 -40.63790 -39.85958 -38.78042 -36.83877 -35.88325 -34.58943 -34.01327 -33.27374 -32.55956 -31.08603 -29.50015 -28.20337 -27.01887 -25.94448 -23.35765 -22.73975 -22.19081 -21.36610 -21.00164 -20.00553 -19.82873 -18.77900 -18.23161 -17.82517 -17.26477 -17.03441 -16.85637 -16.51008 -16.16829 -16.11956 -15.77266 -15.63320 -15.39857 -15.20637 -14.72735 -14.54555 -14.45523 -14.21976 -14.03420 -13.60177 -13.41079 -13.19364 -13.17870 -13.00481 -12.90271 -12.85429 -12.70804 -12.39975 -12.35778 -12.19509 -12.10747 -11.98608 -11.84774 -11.47339 -11.45024 -11.12196 -10.55429 -10.49574 -10.30265 -9.98225 -9.69630 -9.26932 -8.44982 -5.92895 1.37078 1.42524 1.56242 1.61055 1.75174 1.78637 2.08184 2.29717 2.70701 2.85705 3.21795 3.35873 3.40944 3.59672 3.73895 3.92719 4.07240 4.09396 4.13022 4.24888 4.28229 4.30619 4.33811 4.42285 4.44671 4.51373 4.53704 4.58426 4.69462 4.75857 4.85764 4.97043 5.02715 5.04751 5.12778 5.26253 5.32386 5.43196 5.50467 5.56919 5.86890 5.97394 5.98356 6.10479 6.38242 6.57171 6.63393 7.15858 7.21923 7.49703 7.59380 8.15903 8.72665 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.002250 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.856656 B =12439.127031 C =12892.014487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.097 3.903 4 N -0.600 5.600 5 C 0.509 3.491 6 O -0.554 6.554 7 C -0.157 4.157 8 C 0.508 3.492 9 N -0.836 5.836 10 O -0.569 6.569 11 C 0.138 3.862 12 H 0.090 0.910 13 C -0.123 4.123 14 C 0.046 3.954 15 N -0.514 5.514 16 C 0.051 3.949 17 C 0.443 3.557 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.329 4.329 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.033 3.967 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.420 0.580 39 H 0.406 0.594 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.106 0.894 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.070 0.930 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 -6.149 26.320 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.025 4.025 4 N -0.333 5.333 5 C 0.297 3.703 6 O -0.430 6.430 7 C -0.198 4.198 8 C 0.292 3.708 9 N -0.402 5.402 10 O -0.446 6.446 11 C 0.033 3.967 12 H 0.108 0.892 13 C -0.161 4.161 14 C -0.081 4.081 15 N -0.239 5.239 16 C -0.080 4.080 17 C 0.230 3.770 18 O -0.501 6.501 19 N -0.213 5.213 20 C -0.458 4.458 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.200 1.200 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.095 4.095 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.179 0.821 37 H 0.175 0.825 38 H 0.252 0.748 39 H 0.237 0.763 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.230 0.770 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.866 -6.435 25.340 26.211 hybrid contribution -1.121 0.235 -0.329 1.191 sum -2.987 -6.200 25.011 25.941 Atomic orbital electron populations 1.21707 0.93951 1.02440 1.02618 1.22119 0.97089 0.96220 1.02970 1.21997 0.77690 0.98304 1.04488 1.48084 1.07496 1.73041 1.04686 1.20730 0.88449 0.76143 0.85015 1.90852 1.16971 1.49341 1.85827 1.21780 0.98997 1.09804 0.89265 1.20529 0.88257 0.75782 0.86281 1.43671 1.13253 1.75844 1.07428 1.90910 1.17490 1.49524 1.86686 1.21648 0.96027 0.94401 0.84599 0.89170 1.22867 0.99761 0.97505 0.95997 1.23197 0.97020 0.89372 0.98526 1.64387 1.34968 1.02363 1.22219 1.21909 0.94796 0.99342 0.91951 1.20747 0.82133 0.84593 0.89491 1.90490 1.50699 1.35378 1.73579 1.41918 1.33187 1.35065 1.11120 1.19652 1.18546 1.19571 0.88076 0.90532 1.25989 0.95500 0.95778 1.04014 1.69671 1.23115 1.24358 1.38980 0.84908 0.78226 0.78165 0.77266 1.19990 1.19475 1.19793 1.23214 1.01501 0.97012 0.87786 0.90250 0.93690 0.92279 0.92678 0.90148 0.86907 0.90903 0.82075 0.82451 0.74784 0.76265 0.90888 0.88833 0.92541 0.92280 0.90612 0.87609 0.77009 0.91366 0.91221 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.15 -1.45 5.55 30.60 0.17 -1.28 16 3 C 0.10 1.09 3.96 86.38 0.34 1.43 16 4 N -0.60 -10.74 2.37 -792.96 -1.88 -12.62 16 5 C 0.51 10.71 7.62 87.66 0.67 11.38 16 6 O -0.55 -18.61 13.55 20.40 0.28 -18.33 16 7 C -0.16 -1.49 4.84 29.10 0.14 -1.35 16 8 C 0.51 8.29 8.09 87.66 0.71 9.00 16 9 N -0.84 -4.85 8.87 -173.53 -1.54 -6.39 16 10 O -0.57 -17.60 15.02 20.41 0.31 -17.29 16 11 C 0.14 3.29 3.44 45.87 0.16 3.45 16 12 H 0.09 2.58 6.98 -2.39 -0.02 2.57 16 13 C -0.12 -3.01 6.07 31.80 0.19 -2.82 16 14 C 0.05 1.37 5.31 86.65 0.46 1.83 16 15 N -0.51 -16.49 4.91 -887.55 -4.35 -20.85 16 16 C 0.05 1.72 5.19 85.56 0.44 2.17 16 17 C 0.44 20.86 7.61 87.66 0.67 21.52 16 18 O -0.62 -34.12 14.64 -3.05 -0.04 -34.16 16 19 N -0.58 -29.08 5.29 -306.98 -1.62 -30.71 16 20 C -0.33 -18.55 9.68 84.04 0.81 -17.73 16 21 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 24 Si 0.99 42.77 29.55 68.60 2.03 44.79 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 28 C 0.03 0.83 5.85 86.45 0.51 1.33 16 29 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.05 0.80 5.30 -2.39 -0.01 0.79 16 33 H 0.08 0.54 6.35 -2.39 -0.02 0.52 16 34 H 0.11 0.49 6.71 -2.39 -0.02 0.47 16 35 H 0.07 1.05 5.23 -2.39 -0.01 1.04 16 36 H 0.16 0.24 7.29 -2.39 -0.02 0.22 16 37 H 0.16 0.40 6.38 -2.39 -0.02 0.38 16 38 H 0.42 -1.14 8.83 -92.71 -0.82 -1.96 16 39 H 0.41 2.35 8.93 -92.71 -0.83 1.52 16 40 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.09 1.96 6.01 -2.39 -0.01 1.94 16 42 H 0.06 1.47 5.54 -2.39 -0.01 1.46 16 43 H 0.06 2.23 7.10 -2.38 -0.02 2.22 16 44 H 0.08 2.12 7.83 -2.38 -0.02 2.10 16 45 H 0.11 3.19 8.08 -2.39 -0.02 3.17 16 46 H 0.40 18.88 7.90 -92.71 -0.73 18.14 16 47 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 48 H 0.07 1.45 6.34 -2.39 -0.02 1.44 16 49 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -88.02 384.19 -1.44 -89.46 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -1.35 Total: 26.61 kcal Atomic # 6 Polarization: 21.71 SS G_CDS: 6.45 Total: 28.17 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -9.11 Total: -119.24 kcal Atomic # 8 Polarization: -70.33 SS G_CDS: 0.54 Total: -69.79 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -88.02 -1.44 -89.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481393588.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.238 kcal (2) G-P(sol) polarization free energy of solvation -88.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds