Wall clock time and date at job start Sat Apr 11 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47251 * 2 1 4 4 H 1.08994 * 109.47228 * 303.22507 * 3 2 1 5 5 C 1.53001 * 109.46771 * 183.22062 * 3 2 1 6 6 N 1.46508 * 109.47048 * 184.99996 * 5 3 2 7 7 C 1.34767 * 120.00106 * 179.97438 * 6 5 3 8 8 O 1.21281 * 120.00262 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00101 * 179.97438 * 7 6 5 10 10 H 1.08996 * 109.67486 * 300.50389 * 9 7 6 11 11 C 1.53343 * 109.67805 * 180.02562 * 9 7 6 12 12 C 1.52915 * 108.67654 * 172.73669 * 11 9 7 13 13 N 1.45751 * 110.48879 * 50.75938 * 12 11 9 14 14 C 1.33358 * 124.09990 * 341.20359 * 13 12 11 15 15 O 1.21284 * 118.23857 * 181.94401 * 14 13 12 16 16 C 1.50153 * 123.52611 * 1.66586 * 14 13 12 17 17 N 1.46898 * 109.47166 * 63.22400 * 3 2 1 18 18 C 1.46909 * 111.00009 * 58.68440 * 17 3 2 19 19 C 1.50693 * 109.47081 * 174.49454 * 18 17 3 20 20 O 1.21293 * 120.00434 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99861 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00002 * 179.97438 * 21 19 18 23 23 H 1.08002 * 120.00020 * 359.97438 * 22 21 19 24 24 C 1.38957 * 120.00201 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99728 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00102 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47075 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46710 * 119.99980 * 26 24 22 29 29 H 1.48496 * 109.47124 * 239.99992 * 26 24 22 30 30 H 1.09003 * 109.46581 * 293.94986 * 1 2 3 31 31 H 1.08998 * 109.47279 * 53.94320 * 1 2 3 32 32 H 1.08993 * 109.47256 * 173.94913 * 1 2 3 33 33 H 1.09001 * 109.46777 * 240.00240 * 2 1 3 34 34 H 1.09001 * 109.47407 * 120.00408 * 2 1 3 35 35 H 1.08998 * 109.47194 * 65.00722 * 5 3 2 36 36 H 1.08992 * 109.47657 * 304.99957 * 5 3 2 37 37 H 0.97009 * 119.99674 * 0.02562 * 6 5 3 38 38 H 1.09010 * 109.59961 * 52.98126 * 11 9 7 39 39 H 1.08995 * 109.60576 * 292.49846 * 11 9 7 40 40 H 1.09000 * 109.30387 * 290.44368 * 12 11 9 41 41 H 1.09000 * 109.29975 * 171.06690 * 12 11 9 42 42 H 0.96995 * 117.95285 * 160.92344 * 13 12 11 43 43 H 1.09006 * 109.54426 * 222.65536 * 16 14 13 44 44 H 1.08998 * 109.20249 * 102.94623 * 16 14 13 45 45 H 1.00899 * 111.00177 * 294.73478 * 17 3 2 46 46 H 1.09007 * 109.46677 * 294.49050 * 18 17 3 47 47 H 1.09000 * 109.47110 * 54.49083 * 18 17 3 48 48 H 0.97000 * 120.00752 * 359.97438 * 21 19 18 49 49 H 0.97000 * 119.99963 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6303 1.9727 -0.8596 5 6 3.5679 1.4431 -0.0810 6 7 4.0627 2.8169 0.0391 7 6 5.3871 3.0623 -0.0046 8 8 6.1694 2.1460 -0.1437 9 6 5.8961 4.4754 0.1184 10 1 5.4843 5.0850 -0.6858 11 6 7.4274 4.4815 0.0379 12 6 7.9090 5.9318 -0.0182 13 7 7.3066 6.7113 1.0559 14 6 6.2118 6.3440 1.7229 15 8 5.7806 7.0923 2.5746 16 6 5.4806 5.0568 1.4721 17 7 1.6150 2.1121 1.2365 18 6 2.1240 1.4055 2.4196 19 6 1.7844 2.1921 3.6592 20 8 1.1784 3.2388 3.5664 21 7 2.1549 1.7332 4.8711 22 6 1.8464 2.4492 5.9989 23 1 1.3068 3.3811 5.9162 24 6 2.2279 1.9758 7.2484 25 7 2.8848 0.8421 7.3490 26 14 1.8081 2.9516 8.7849 27 1 1.0709 4.1829 8.4033 28 1 0.9596 2.1246 9.6801 29 1 3.0596 3.3228 9.4929 30 1 -0.3632 0.4172 0.9392 31 1 -0.3634 0.6049 -0.8308 32 1 -0.3633 -1.0219 -0.1083 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8811 1.0266 -1.0384 36 1 3.9750 0.8382 0.7291 37 1 3.4370 3.5497 0.1507 38 1 7.7485 3.9545 -0.8608 39 1 7.8420 3.9924 0.9192 40 1 7.6314 6.3668 -0.9784 41 1 8.9939 5.9553 0.0843 42 1 7.7308 7.5476 1.3039 43 1 4.4063 5.2416 1.4723 44 1 5.7246 4.3461 2.2617 45 1 0.6106 2.2010 1.2727 46 1 1.6651 0.4185 2.4786 47 1 3.2060 1.2991 2.3418 48 1 2.6398 0.8964 4.9455 49 1 3.1508 0.5115 8.2212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481802263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:11 Heat of formation + Delta-G solvation = -121.500626 kcal Electronic energy + Delta-G solvation = -30668.008054 eV Core-core repulsion = 26436.236790 eV Total energy + Delta-G solvation = -4231.771265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.76256 -39.54603 -38.62243 -37.33567 -36.34897 -34.22882 -33.87908 -33.25344 -31.79608 -31.14559 -29.88394 -28.76162 -26.68840 -25.43949 -24.25939 -23.73652 -22.67136 -20.59970 -20.08020 -19.36724 -19.09701 -17.91484 -17.64414 -16.98745 -16.81923 -16.45986 -15.80845 -15.58549 -15.40438 -15.08024 -14.86993 -14.43936 -14.29699 -14.21797 -13.99681 -13.89220 -13.65443 -13.52656 -13.46985 -13.04847 -12.59972 -12.30716 -12.07925 -11.96482 -11.87628 -11.79902 -11.48856 -11.44032 -11.29251 -11.22235 -11.07423 -10.90173 -10.81880 -10.31347 -10.29899 -10.19500 -9.59274 -9.48976 -9.27255 -9.02614 -8.51342 -8.09229 -7.93609 -6.39212 -3.79791 2.54201 2.60250 3.10215 3.12686 3.19180 3.29953 3.37471 3.92479 4.09080 4.26585 4.32648 4.44362 4.46921 4.54974 4.58338 4.81580 4.94712 4.98024 5.00517 5.06435 5.15302 5.23441 5.27262 5.29557 5.40028 5.50388 5.55933 5.57053 5.61485 5.71443 5.74891 5.79979 5.84279 5.90259 5.95805 6.05705 6.16306 6.26746 6.43838 6.60760 7.11447 7.15282 7.52236 7.56453 7.58297 8.08994 8.11194 8.20630 8.63278 9.20865 9.56810 10.07833 10.78529 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007178 B = 0.003931 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3899.761208 B = 7120.560035 C =10060.637347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.089 0.911 5 C 0.126 3.874 6 N -0.710 5.710 7 C 0.518 3.482 8 O -0.546 6.546 9 C -0.109 4.109 10 H 0.104 0.896 11 C -0.118 4.118 12 C 0.111 3.889 13 N -0.725 5.725 14 C 0.524 3.476 15 O -0.547 6.547 16 C -0.128 4.128 17 N -0.659 5.659 18 C 0.044 3.956 19 C 0.441 3.559 20 O -0.581 6.581 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.928 3.072 27 H -0.267 1.267 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.412 0.588 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.399 0.601 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.353 0.647 46 H 0.047 0.953 47 H 0.086 0.914 48 H 0.391 0.609 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.406 1.789 -20.351 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.107 0.893 5 C 0.001 3.999 6 N -0.362 5.362 7 C 0.304 3.696 8 O -0.423 6.423 9 C -0.131 4.131 10 H 0.122 0.878 11 C -0.156 4.156 12 C -0.013 4.013 13 N -0.378 5.378 14 C 0.311 3.689 15 O -0.424 6.424 16 C -0.168 4.168 17 N -0.291 5.291 18 C -0.089 4.089 19 C 0.226 3.774 20 O -0.465 6.465 21 N -0.200 5.200 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.755 3.245 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.248 0.752 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.234 0.766 43 H 0.132 0.868 44 H 0.127 0.873 45 H 0.173 0.827 46 H 0.065 0.935 47 H 0.104 0.896 48 H 0.224 0.776 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.769 2.372 -19.960 21.210 hybrid contribution -0.502 -0.447 1.037 1.236 sum 6.267 1.925 -18.923 20.027 Atomic orbital electron populations 1.21757 0.95247 1.01941 1.02133 1.22206 0.96788 0.97955 1.03025 1.21932 0.94094 0.93434 0.94319 0.89251 1.21420 0.92967 0.83657 1.01823 1.45841 1.07001 1.10157 1.73171 1.20350 0.82432 0.90613 0.76240 1.90698 1.55802 1.46144 1.49689 1.21432 0.97689 0.94655 0.99307 0.87816 1.21724 0.93249 0.95365 1.05230 1.21407 0.98205 0.91594 0.90110 1.45509 1.28844 1.25832 1.37603 1.20034 0.80215 0.88048 0.80652 1.90817 1.65523 1.52686 1.33354 1.21672 1.02668 0.95036 0.97397 1.60200 1.18494 1.50860 0.99555 1.21763 1.01067 0.95498 0.90536 1.19785 0.85491 0.87943 0.84156 1.90528 1.45051 1.24685 1.86281 1.41871 1.50480 1.22890 1.04793 1.19746 1.34007 1.05646 0.83313 0.87865 1.25249 0.96833 0.96478 0.99328 1.69620 1.39058 1.20072 1.25570 0.85824 0.78204 0.79586 0.80908 1.19172 1.20815 1.20728 0.92412 0.92518 0.92501 0.91380 0.91042 0.91287 0.91304 0.75194 0.88764 0.90065 0.91513 0.90198 0.76599 0.86835 0.87349 0.82658 0.93503 0.89605 0.77598 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.49 37.16 0.35 -1.04 16 2 C -0.16 -1.48 5.12 -26.73 -0.14 -1.62 16 3 C 0.07 0.73 2.72 -67.71 -0.18 0.55 16 4 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 5 C 0.13 1.37 4.71 -4.04 -0.02 1.35 16 6 N -0.71 -7.91 5.31 -60.29 -0.32 -8.23 16 7 C 0.52 6.21 7.13 -10.99 -0.08 6.13 16 8 O -0.55 -8.25 15.90 5.56 0.09 -8.16 16 9 C -0.11 -1.03 2.60 -91.55 -0.24 -1.27 16 10 H 0.10 0.76 8.13 -51.93 -0.42 0.34 16 11 C -0.12 -0.97 4.70 -26.60 -0.13 -1.09 16 12 C 0.11 0.69 7.17 -4.49 -0.03 0.66 16 13 N -0.72 -6.66 5.45 -61.40 -0.33 -7.00 16 14 C 0.52 6.91 7.71 -11.88 -0.09 6.82 16 15 O -0.55 -9.95 17.78 5.55 0.10 -9.85 16 16 C -0.13 -1.53 5.21 -28.11 -0.15 -1.67 16 17 N -0.66 -8.94 5.33 -107.99 -0.58 -9.52 16 18 C 0.04 0.72 5.33 -4.97 -0.03 0.69 16 19 C 0.44 10.07 7.83 -10.99 -0.09 9.99 16 20 O -0.58 -15.25 15.90 5.55 0.09 -15.16 16 21 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 22 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 23 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 26 Si 0.93 21.47 29.55 -169.99 -5.02 16.45 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 H 0.06 0.61 7.17 -51.93 -0.37 0.24 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.75 6.33 -51.93 -0.33 0.42 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.88 6.58 -51.93 -0.34 0.53 16 37 H 0.41 4.41 7.91 -40.82 -0.32 4.09 16 38 H 0.09 0.73 7.90 -51.92 -0.41 0.31 16 39 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.40 3.25 8.80 -40.82 -0.36 2.89 16 43 H 0.11 1.42 7.98 -51.93 -0.41 1.00 16 44 H 0.11 1.47 8.09 -51.93 -0.42 1.05 16 45 H 0.35 5.00 7.34 -39.29 -0.29 4.71 16 46 H 0.05 0.71 6.52 -51.93 -0.34 0.37 16 47 H 0.09 1.38 6.17 -51.93 -0.32 1.06 16 48 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 49 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -35.55 397.19 -7.93 -43.49 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -7.55 Total: 18.81 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -1.05 Total: 11.52 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.56 Total: -63.09 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: 0.28 Total: -33.17 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.55 -7.93 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481802263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.015 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds