Wall clock time and date at job start Sat Apr 11 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47262 * 2 1 4 4 H 1.08993 * 109.46875 * 55.16559 * 3 2 1 5 5 C 1.52999 * 109.46994 * 175.16796 * 3 2 1 6 6 N 1.46495 * 109.47076 * 175.00055 * 5 3 2 7 7 C 1.34781 * 120.00328 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99185 * 359.72116 * 7 6 5 9 9 C 1.50692 * 120.00502 * 179.97438 * 7 6 5 10 10 H 1.09006 * 109.66969 * 59.99539 * 9 7 6 11 11 C 1.53343 * 109.67833 * 180.49935 * 9 7 6 12 12 C 1.52891 * 108.69358 * 187.21739 * 11 9 7 13 13 N 1.45753 * 110.51995 * 309.33166 * 12 11 9 14 14 C 1.33348 * 124.11131 * 19.01353 * 13 12 11 15 15 O 1.21282 * 118.25098 * 177.77690 * 14 13 12 16 16 C 1.50185 * 123.50464 * 357.79825 * 14 13 12 17 17 N 1.46903 * 109.47040 * 295.16493 * 3 2 1 18 18 C 1.46899 * 111.00116 * 297.29670 * 17 3 2 19 19 C 1.50696 * 109.47152 * 179.88361 * 18 17 3 20 20 O 1.21292 * 120.00005 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00335 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00604 * 180.02562 * 21 19 18 23 23 H 1.08006 * 119.99821 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00358 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00000 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00109 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47061 * 89.99987 * 26 24 22 28 28 H 1.48497 * 109.47179 * 210.00207 * 26 24 22 29 29 H 1.48499 * 109.46905 * 330.00302 * 26 24 22 30 30 H 1.08995 * 109.47282 * 295.55354 * 1 2 3 31 31 H 1.09010 * 109.46728 * 55.54977 * 1 2 3 32 32 H 1.09002 * 109.47388 * 175.54254 * 1 2 3 33 33 H 1.09006 * 109.46858 * 239.99650 * 2 1 3 34 34 H 1.09000 * 109.46696 * 119.99951 * 2 1 3 35 35 H 1.09004 * 109.47407 * 54.99841 * 5 3 2 36 36 H 1.08999 * 109.47139 * 294.99944 * 5 3 2 37 37 H 0.97006 * 119.99897 * 359.97438 * 6 5 3 38 38 H 1.09004 * 109.59794 * 307.02274 * 11 9 7 39 39 H 1.08997 * 109.60064 * 67.50168 * 11 9 7 40 40 H 1.09003 * 109.31418 * 188.98949 * 12 11 9 41 41 H 1.09001 * 109.08754 * 69.52684 * 12 11 9 42 42 H 0.97005 * 117.94545 * 199.03576 * 13 12 11 43 43 H 1.08994 * 109.39993 * 257.45215 * 16 14 13 44 44 H 1.09003 * 109.39893 * 137.71201 * 16 14 13 45 45 H 1.00896 * 110.99936 * 173.33811 * 17 3 2 46 46 H 1.08997 * 109.47093 * 299.88867 * 18 17 3 47 47 H 1.09005 * 109.47056 * 59.88753 * 18 17 3 48 48 H 0.97007 * 120.00018 * 0.02562 * 21 19 18 49 49 H 0.96999 * 119.99584 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6077 1.9806 0.8435 5 6 3.5652 1.4441 0.1215 6 7 4.0631 2.8166 0.0017 7 6 5.3860 3.0629 0.0792 8 8 6.1637 2.1486 0.2531 9 6 5.8983 4.4746 -0.0446 10 1 5.4713 5.0906 0.7469 11 6 7.4278 4.4804 0.0648 12 6 7.9098 5.9303 0.1181 13 7 7.3274 6.7027 -0.9721 14 6 6.2416 6.3343 -1.6529 15 8 5.8239 7.0790 -2.5142 16 6 5.5080 5.0465 -1.4098 17 7 1.6480 2.1005 -1.2536 18 6 2.2657 1.4392 -2.4108 19 6 1.8392 2.1385 -3.6757 20 8 1.0943 3.0941 -3.6188 21 7 2.2862 1.7029 -4.8701 22 6 1.8986 2.3393 -6.0209 23 1 1.2353 3.1902 -5.9702 24 6 2.3600 1.8905 -7.2523 25 7 3.1674 0.8555 -7.3140 26 14 1.8324 2.7582 -8.8202 27 1 2.7965 3.8433 -9.1338 28 1 1.8032 1.7831 -9.9398 29 1 0.4781 3.3380 -8.6333 30 1 -0.3633 0.4433 0.9271 31 1 -0.3633 0.5814 -0.8475 32 1 -0.3634 -1.0246 -0.0799 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9936 0.8316 -0.6719 36 1 3.8529 1.0365 1.0906 37 1 3.4407 3.5483 -0.1334 38 1 7.7313 3.9598 0.9732 39 1 7.8584 3.9844 -0.8049 40 1 8.9964 5.9523 0.0349 41 1 7.6124 6.3701 1.0701 42 1 7.7568 7.5370 -1.2182 43 1 5.7659 4.3301 -2.1897 44 1 4.4341 5.2321 -1.4311 45 1 1.8773 3.0828 -1.2334 46 1 3.3509 1.4846 -2.3187 47 1 1.9474 0.3973 -2.4466 48 1 2.8823 0.9389 -4.9157 49 1 3.4892 0.5420 -8.1737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481802265.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:21 Heat of formation + Delta-G solvation = -118.950777 kcal Electronic energy + Delta-G solvation = -30677.154503 eV Core-core repulsion = 26445.493808 eV Total energy + Delta-G solvation = -4231.660695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.93487 -39.72808 -38.62447 -37.35258 -36.45197 -34.27548 -33.91049 -33.34523 -31.97622 -31.17731 -29.99292 -28.70282 -26.66934 -25.54616 -24.27130 -23.80092 -22.71162 -20.73625 -20.16897 -19.50291 -19.08435 -17.91220 -17.86133 -17.23783 -16.82399 -16.63387 -15.95391 -15.61836 -15.42870 -15.27837 -14.68752 -14.56264 -14.35923 -14.25689 -14.06357 -13.81187 -13.67935 -13.64886 -13.47114 -13.08585 -12.71023 -12.20553 -12.15213 -12.05063 -11.95944 -11.68488 -11.50270 -11.46707 -11.40883 -11.28890 -11.02051 -10.89569 -10.60515 -10.43687 -10.37094 -10.19651 -9.74559 -9.49015 -9.37183 -9.29074 -8.49691 -8.12491 -7.94708 -6.39941 -3.80693 2.36429 2.46440 2.87283 3.00341 3.20413 3.29089 3.34858 3.90835 4.06547 4.12612 4.25314 4.29846 4.33510 4.41308 4.60084 4.76408 4.86243 4.87626 4.94301 5.07623 5.16444 5.17491 5.26966 5.31142 5.34109 5.47036 5.48615 5.54733 5.56996 5.72278 5.77066 5.78367 5.88139 5.97548 6.06112 6.16783 6.21945 6.28749 6.50262 6.52162 7.04350 7.10382 7.20711 7.51519 7.57271 7.96437 7.99878 8.07574 8.62010 9.19610 9.55442 10.06300 10.77659 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007266 B = 0.003868 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3852.859396 B = 7236.238416 C =10117.049251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.076 3.924 4 H 0.089 0.911 5 C 0.079 3.921 6 N -0.726 5.726 7 C 0.522 3.478 8 O -0.535 6.535 9 C -0.111 4.111 10 H 0.106 0.894 11 C -0.118 4.118 12 C 0.111 3.889 13 N -0.724 5.724 14 C 0.524 3.476 15 O -0.545 6.545 16 C -0.129 4.129 17 N -0.652 5.652 18 C 0.043 3.957 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.562 5.562 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.400 0.600 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.400 0.600 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.345 0.655 46 H 0.046 0.954 47 H 0.089 0.911 48 H 0.391 0.609 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.905 3.147 20.419 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.035 4.035 4 H 0.107 0.893 5 C -0.047 4.047 6 N -0.379 5.379 7 C 0.307 3.693 8 O -0.411 6.411 9 C -0.132 4.132 10 H 0.124 0.876 11 C -0.156 4.156 12 C -0.013 4.013 13 N -0.377 5.377 14 C 0.310 3.690 15 O -0.422 6.422 16 C -0.169 4.169 17 N -0.285 5.285 18 C -0.089 4.089 19 C 0.225 3.775 20 O -0.468 6.468 21 N -0.198 5.198 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.178 4.178 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.235 0.765 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.235 0.765 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.165 0.835 46 H 0.064 0.936 47 H 0.107 0.893 48 H 0.224 0.776 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.099 2.846 19.954 21.370 hybrid contribution 1.069 0.712 -0.888 1.561 sum 8.168 3.558 19.066 21.045 Atomic orbital electron populations 1.21658 0.94632 1.01243 1.02701 1.21516 0.97363 0.94280 1.02066 1.21980 0.90501 0.97360 0.93669 0.89272 1.22227 0.96668 0.83051 1.02723 1.46003 1.07564 1.10136 1.74180 1.20365 0.82148 0.90695 0.76047 1.90718 1.55769 1.46217 1.48435 1.21468 0.98077 0.94468 0.99230 0.87611 1.21729 0.92982 0.95566 1.05338 1.21414 0.98593 0.91585 0.89753 1.45497 1.29513 1.26267 1.36407 1.19958 0.80241 0.87913 0.80845 1.90827 1.65636 1.52796 1.32983 1.21690 1.02529 0.95388 0.97333 1.60233 1.61606 1.06689 0.99927 1.21784 0.96850 0.99595 0.90682 1.19778 0.85913 0.87364 0.84450 1.90528 1.39580 1.30002 1.86656 1.41857 1.43271 1.29895 1.04813 1.19696 1.27231 1.12930 0.82993 0.87910 1.25250 0.96571 0.96526 0.99480 1.69613 1.33142 1.24780 1.26721 0.85877 0.79275 0.78717 0.80559 1.20378 1.20940 1.19372 0.93348 0.90687 0.93395 0.91362 0.91819 0.90751 0.91065 0.76497 0.88641 0.89998 0.90001 0.91437 0.76456 0.87233 0.87224 0.83511 0.93611 0.89261 0.77554 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.85 37.16 0.37 -1.20 16 2 C -0.11 -1.15 5.25 -26.73 -0.14 -1.29 16 3 C 0.08 0.78 2.72 -67.71 -0.18 0.60 16 4 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 5 C 0.08 0.82 4.55 -4.05 -0.02 0.80 16 6 N -0.73 -7.15 5.27 -60.30 -0.32 -7.47 16 7 C 0.52 5.70 7.13 -10.99 -0.08 5.62 16 8 O -0.54 -7.66 15.90 5.55 0.09 -7.58 16 9 C -0.11 -0.92 2.60 -91.56 -0.24 -1.16 16 10 H 0.11 0.66 8.13 -51.93 -0.42 0.23 16 11 C -0.12 -0.87 4.71 -26.61 -0.13 -1.00 16 12 C 0.11 0.61 7.17 -4.50 -0.03 0.58 16 13 N -0.72 -6.05 5.45 -61.40 -0.33 -6.39 16 14 C 0.52 6.37 7.71 -11.87 -0.09 6.28 16 15 O -0.55 -9.38 17.78 5.56 0.10 -9.28 16 16 C -0.13 -1.37 5.20 -28.09 -0.15 -1.52 16 17 N -0.65 -9.07 5.36 -107.99 -0.58 -9.65 16 18 C 0.04 0.72 5.38 -4.98 -0.03 0.69 16 19 C 0.44 10.08 7.82 -10.99 -0.09 9.99 16 20 O -0.58 -15.36 15.78 5.55 0.09 -15.27 16 21 N -0.56 -14.16 5.29 -10.97 -0.06 -14.22 16 22 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 23 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 24 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 25 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 26 Si 0.93 21.41 29.55 -169.99 -5.02 16.38 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.01 7.63 -51.92 -0.40 0.61 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.76 6.23 -51.93 -0.32 0.43 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.91 6.66 -51.93 -0.35 0.57 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 3.42 6.92 -40.82 -0.28 3.13 16 38 H 0.10 0.66 7.89 -51.93 -0.41 0.26 16 39 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.40 2.97 8.80 -40.82 -0.36 2.61 16 43 H 0.11 1.32 8.09 -51.93 -0.42 0.90 16 44 H 0.11 1.15 7.94 -51.93 -0.41 0.74 16 45 H 0.34 4.84 7.07 -39.29 -0.28 4.56 16 46 H 0.05 0.72 6.37 -51.93 -0.33 0.39 16 47 H 0.09 1.40 6.26 -51.93 -0.33 1.08 16 48 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 49 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -35.92 396.50 -7.90 -43.82 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -7.52 Total: 17.29 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -1.04 Total: 10.41 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.56 Total: -61.76 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: 0.27 Total: -32.13 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.92 -7.90 -43.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481802265.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.128 kcal (2) G-P(sol) polarization free energy of solvation -35.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds