Wall clock time and date at job start Sat Apr 11 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47262 * 2 1 4 4 H 1.08993 * 109.46875 * 55.16559 * 3 2 1 5 5 C 1.52999 * 109.46994 * 175.16796 * 3 2 1 6 6 N 1.46495 * 109.47076 * 175.00055 * 5 3 2 7 7 C 1.34781 * 120.00328 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99185 * 359.72116 * 7 6 5 9 9 C 1.50692 * 120.00502 * 179.97438 * 7 6 5 10 10 H 1.09006 * 109.66969 * 59.99539 * 9 7 6 11 11 C 1.53343 * 109.67833 * 180.49935 * 9 7 6 12 12 C 1.52891 * 108.69358 * 187.21739 * 11 9 7 13 13 N 1.45753 * 110.51995 * 309.33166 * 12 11 9 14 14 C 1.33348 * 124.11131 * 19.01353 * 13 12 11 15 15 O 1.21282 * 118.25098 * 177.77690 * 14 13 12 16 16 C 1.50185 * 123.50464 * 357.79825 * 14 13 12 17 17 N 1.46903 * 109.47040 * 295.16493 * 3 2 1 18 18 C 1.46899 * 111.00116 * 297.29670 * 17 3 2 19 19 C 1.50696 * 109.47152 * 179.88361 * 18 17 3 20 20 O 1.21292 * 120.00005 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00335 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00604 * 180.02562 * 21 19 18 23 23 H 1.08006 * 119.99821 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00358 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00000 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00109 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47061 * 89.99987 * 26 24 22 28 28 H 1.48497 * 109.47179 * 210.00207 * 26 24 22 29 29 H 1.48499 * 109.46905 * 330.00302 * 26 24 22 30 30 H 1.08995 * 109.47282 * 295.55354 * 1 2 3 31 31 H 1.09010 * 109.46728 * 55.54977 * 1 2 3 32 32 H 1.09002 * 109.47388 * 175.54254 * 1 2 3 33 33 H 1.09006 * 109.46858 * 239.99650 * 2 1 3 34 34 H 1.09000 * 109.46696 * 119.99951 * 2 1 3 35 35 H 1.09004 * 109.47407 * 54.99841 * 5 3 2 36 36 H 1.08999 * 109.47139 * 294.99944 * 5 3 2 37 37 H 0.97006 * 119.99897 * 359.97438 * 6 5 3 38 38 H 1.09004 * 109.59794 * 307.02274 * 11 9 7 39 39 H 1.08997 * 109.60064 * 67.50168 * 11 9 7 40 40 H 1.09003 * 109.31418 * 188.98949 * 12 11 9 41 41 H 1.09001 * 109.08754 * 69.52684 * 12 11 9 42 42 H 0.97005 * 117.94545 * 199.03576 * 13 12 11 43 43 H 1.08994 * 109.39993 * 257.45215 * 16 14 13 44 44 H 1.09003 * 109.39893 * 137.71201 * 16 14 13 45 45 H 1.00896 * 110.99936 * 173.33811 * 17 3 2 46 46 H 1.08997 * 109.47093 * 299.88867 * 18 17 3 47 47 H 1.09005 * 109.47056 * 59.88753 * 18 17 3 48 48 H 0.97007 * 120.00018 * 0.02562 * 21 19 18 49 49 H 0.96999 * 119.99584 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6077 1.9806 0.8435 5 6 3.5652 1.4441 0.1215 6 7 4.0631 2.8166 0.0017 7 6 5.3860 3.0629 0.0792 8 8 6.1637 2.1486 0.2531 9 6 5.8983 4.4746 -0.0446 10 1 5.4713 5.0906 0.7469 11 6 7.4278 4.4804 0.0648 12 6 7.9098 5.9303 0.1181 13 7 7.3274 6.7027 -0.9721 14 6 6.2416 6.3343 -1.6529 15 8 5.8239 7.0790 -2.5142 16 6 5.5080 5.0465 -1.4098 17 7 1.6480 2.1005 -1.2536 18 6 2.2657 1.4392 -2.4108 19 6 1.8392 2.1385 -3.6757 20 8 1.0943 3.0941 -3.6188 21 7 2.2862 1.7029 -4.8701 22 6 1.8986 2.3393 -6.0209 23 1 1.2353 3.1902 -5.9702 24 6 2.3600 1.8905 -7.2523 25 7 3.1674 0.8555 -7.3140 26 14 1.8324 2.7582 -8.8202 27 1 2.7965 3.8433 -9.1338 28 1 1.8032 1.7831 -9.9398 29 1 0.4781 3.3380 -8.6333 30 1 -0.3633 0.4433 0.9271 31 1 -0.3633 0.5814 -0.8475 32 1 -0.3634 -1.0246 -0.0799 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9936 0.8316 -0.6719 36 1 3.8529 1.0365 1.0906 37 1 3.4407 3.5483 -0.1334 38 1 7.7313 3.9598 0.9732 39 1 7.8584 3.9844 -0.8049 40 1 8.9964 5.9523 0.0349 41 1 7.6124 6.3701 1.0701 42 1 7.7568 7.5370 -1.2182 43 1 5.7659 4.3301 -2.1897 44 1 4.4341 5.2321 -1.4311 45 1 1.8773 3.0828 -1.2334 46 1 3.3509 1.4846 -2.3187 47 1 1.9474 0.3973 -2.4466 48 1 2.8823 0.9389 -4.9157 49 1 3.4892 0.5420 -8.1737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481802265.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:18 Heat of formation + Delta-G solvation = -149.570296 kcal Electronic energy + Delta-G solvation = -30678.482265 eV Core-core repulsion = 26445.493808 eV Total energy + Delta-G solvation = -4232.988457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.79194 -40.74138 -40.13319 -38.67544 -37.33891 -35.96971 -35.14942 -34.12951 -33.33940 -32.97406 -30.75381 -29.74075 -28.10987 -26.46458 -25.93826 -24.58857 -23.51997 -21.82210 -21.32554 -20.53491 -20.22694 -19.85988 -18.73179 -18.31455 -18.00497 -17.48878 -17.01631 -16.82855 -16.52450 -16.43841 -16.17996 -15.87309 -15.67850 -15.23377 -15.16842 -15.04595 -14.75557 -14.57896 -14.50149 -14.17239 -13.93257 -13.73130 -13.46463 -13.12530 -12.93064 -12.89142 -12.78040 -12.64274 -12.41981 -12.34035 -12.13553 -12.12414 -12.09956 -11.77336 -11.53077 -11.48397 -11.42454 -10.69034 -10.33992 -10.16792 -10.11151 -10.01530 -9.35282 -8.47414 -5.95700 1.36400 1.40032 1.47167 1.52489 1.52752 2.04554 2.07270 2.26143 2.28227 2.93583 3.20159 3.36328 3.51676 3.53507 3.62732 3.71342 3.74604 4.02344 4.13561 4.19846 4.21676 4.30908 4.36700 4.39181 4.47375 4.56945 4.58411 4.66782 4.69786 4.72199 4.83496 4.96329 4.97383 5.01215 5.17526 5.21395 5.33924 5.40059 5.40577 5.60247 5.79623 5.87828 6.08163 6.23842 6.36666 6.41581 6.58868 7.11962 7.12377 7.13023 7.56059 8.10936 8.70035 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007266 B = 0.003868 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3852.859396 B = 7236.238416 C =10117.049251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C 0.085 3.915 4 H 0.113 0.887 5 C 0.084 3.916 6 N -0.721 5.721 7 C 0.520 3.480 8 O -0.570 6.570 9 C -0.099 4.099 10 H 0.137 0.863 11 C -0.117 4.117 12 C 0.111 3.889 13 N -0.709 5.709 14 C 0.521 3.479 15 O -0.607 6.607 16 C -0.126 4.126 17 N -0.660 5.660 18 C 0.064 3.936 19 C 0.439 3.561 20 O -0.618 6.618 21 N -0.574 5.574 22 C -0.331 4.331 23 H 0.079 0.921 24 C -0.012 4.012 25 N -0.921 5.921 26 Si 0.989 3.011 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.407 0.593 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.407 0.593 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.344 0.656 46 H 0.057 0.943 47 H 0.102 0.898 48 H 0.394 0.606 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 3.151 22.635 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.025 4.025 4 H 0.130 0.870 5 C -0.042 4.042 6 N -0.373 5.373 7 C 0.307 3.693 8 O -0.449 6.449 9 C -0.121 4.121 10 H 0.155 0.845 11 C -0.155 4.155 12 C -0.012 4.012 13 N -0.360 5.360 14 C 0.309 3.691 15 O -0.489 6.489 16 C -0.166 4.166 17 N -0.293 5.293 18 C -0.068 4.068 19 C 0.226 3.774 20 O -0.505 6.505 21 N -0.211 5.211 22 C -0.461 4.461 23 H 0.097 0.903 24 C -0.212 4.212 25 N -0.562 5.562 26 Si 0.813 3.187 27 H -0.200 1.200 28 H -0.194 1.194 29 H -0.196 1.196 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.244 0.756 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.243 0.757 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.164 0.836 46 H 0.074 0.926 47 H 0.120 0.880 48 H 0.227 0.773 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.884 2.832 22.228 23.754 hybrid contribution 0.843 0.683 -1.460 1.819 sum 8.727 3.515 20.768 22.800 Atomic orbital electron populations 1.21611 0.95094 1.01192 1.02027 1.21549 0.96846 0.94060 1.02768 1.22048 0.90565 0.97591 0.92287 0.86952 1.22149 0.96310 0.83069 1.02656 1.46007 1.07592 1.10297 1.73451 1.20765 0.82041 0.91290 0.75175 1.90705 1.56589 1.47407 1.50209 1.21467 0.99009 0.93080 0.98495 0.84518 1.21742 0.91989 0.96859 1.04960 1.21687 0.99852 0.89963 0.89680 1.45499 1.27950 1.26491 1.36024 1.20151 0.80884 0.87725 0.80380 1.90796 1.67663 1.54622 1.35815 1.21589 1.02358 0.94427 0.98218 1.60223 1.61799 1.06773 1.00476 1.21535 0.97380 0.99381 0.88505 1.20870 0.84247 0.86593 0.85660 1.90497 1.40869 1.31608 1.87479 1.41936 1.43929 1.30184 1.05098 1.19651 1.28296 1.13362 0.84793 0.90295 1.25999 0.96270 0.97048 1.01874 1.69674 1.33435 1.25402 1.27699 0.84981 0.78642 0.77936 0.77133 1.19960 1.19430 1.19599 0.91923 0.93784 0.92804 0.92554 0.89243 0.92673 0.89814 0.75615 0.87565 0.92020 0.87486 0.88466 0.75706 0.89329 0.87448 0.83610 0.92557 0.88022 0.77279 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.85 71.98 0.71 -2.11 16 2 C -0.11 -2.05 5.25 30.59 0.16 -1.89 16 3 C 0.09 1.57 2.72 44.91 0.12 1.69 16 4 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 5 C 0.08 1.59 4.55 86.38 0.39 1.98 16 6 N -0.72 -13.14 5.27 -463.07 -2.44 -15.58 16 7 C 0.52 10.70 7.13 87.65 0.63 11.33 16 8 O -0.57 -15.78 15.90 -3.04 -0.05 -15.82 16 9 C -0.10 -1.49 2.60 -11.40 -0.03 -1.52 16 10 H 0.14 1.24 8.13 -2.38 -0.02 1.22 16 11 C -0.12 -1.49 4.71 30.67 0.14 -1.35 16 12 C 0.11 0.87 7.17 86.48 0.62 1.49 16 13 N -0.71 -10.75 5.45 -467.36 -2.55 -13.29 16 14 C 0.52 12.71 7.71 87.72 0.68 13.39 16 15 O -0.61 -21.68 17.78 -3.04 -0.05 -21.74 16 16 C -0.13 -2.68 5.20 29.71 0.15 -2.53 16 17 N -0.66 -17.83 5.36 -495.59 -2.65 -20.49 16 18 C 0.06 2.12 5.38 85.56 0.46 2.58 16 19 C 0.44 20.63 7.82 87.66 0.69 21.32 16 20 O -0.62 -33.52 15.78 -3.07 -0.05 -33.57 16 21 N -0.57 -29.86 5.29 -306.99 -1.62 -31.48 16 22 C -0.33 -19.17 9.68 84.04 0.81 -18.35 16 23 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 25 N -0.92 -50.91 13.05 21.66 0.28 -50.62 16 26 Si 0.99 44.25 29.55 68.60 2.03 46.28 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 1.15 7.63 -2.38 -0.02 1.13 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.16 6.23 -2.38 -0.01 1.15 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.29 6.66 -2.39 -0.02 1.27 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.41 6.34 6.92 -92.70 -0.64 5.69 16 38 H 0.11 1.20 7.89 -2.38 -0.02 1.18 16 39 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 40 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.41 5.43 8.80 -92.70 -0.82 4.61 16 43 H 0.09 2.26 8.09 -2.39 -0.02 2.25 16 44 H 0.11 2.30 7.94 -2.39 -0.02 2.28 16 45 H 0.34 9.44 7.07 -89.70 -0.63 8.81 16 46 H 0.06 1.77 6.37 -2.39 -0.02 1.75 16 47 H 0.10 3.15 6.26 -2.38 -0.01 3.14 16 48 H 0.39 19.73 7.90 -92.70 -0.73 18.99 16 49 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -81.13 396.50 -2.91 -84.04 By element: Atomic # 1 Polarization: 48.27 SS G_CDS: -1.80 Total: 46.46 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 6.00 Total: 25.82 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -8.98 Total: -131.46 kcal Atomic # 8 Polarization: -70.98 SS G_CDS: -0.15 Total: -71.13 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -81.13 -2.91 -84.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481802265.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.533 kcal (2) G-P(sol) polarization free energy of solvation -81.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds