Wall clock time and date at job start Sat Apr 11 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46986 * 2 1 4 4 C 1.50702 * 109.46990 * 239.99878 * 2 1 3 5 5 N 1.34771 * 120.00083 * 59.99861 * 4 2 1 6 6 O 1.21281 * 119.99700 * 239.99778 * 4 2 1 7 7 C 1.50702 * 109.47093 * 120.00062 * 2 1 3 8 8 O 1.21280 * 120.00009 * 120.00193 * 7 2 1 9 9 N 1.34774 * 119.99889 * 299.99736 * 7 2 1 10 10 C 1.46505 * 120.00190 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46653 * 34.99978 * 10 9 7 12 12 C 1.52995 * 109.47041 * 155.00108 * 10 9 7 13 13 N 1.46896 * 109.47189 * 304.99655 * 12 10 9 14 14 C 1.46904 * 111.00207 * 180.02562 * 13 12 10 15 15 C 1.50691 * 109.47414 * 180.02562 * 14 13 12 16 16 O 1.21292 * 120.00322 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00048 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00176 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00012 * 359.97438 * 18 17 15 20 20 C 1.38941 * 120.00209 * 179.97438 * 18 17 15 21 21 N 1.31417 * 120.00400 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00199 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46798 * 89.99999 * 22 20 18 24 24 H 1.48499 * 109.47698 * 209.99785 * 22 20 18 25 25 H 1.48495 * 109.47351 * 330.00184 * 22 20 18 26 26 C 1.53003 * 109.46936 * 275.00149 * 10 9 7 27 27 C 1.53001 * 117.51964 * 356.28241 * 26 10 9 28 28 C 1.52999 * 60.00190 * 107.47982 * 27 26 10 29 29 H 1.08996 * 109.46723 * 299.99732 * 1 2 3 30 30 H 1.08992 * 109.47072 * 60.00012 * 1 2 3 31 31 H 1.09007 * 109.46563 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46714 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47166 * 299.99640 * 3 2 1 34 34 H 1.09000 * 109.46980 * 60.00060 * 3 2 1 35 35 H 0.97004 * 120.00016 * 359.97438 * 5 4 2 36 36 H 0.97003 * 119.99953 * 179.97438 * 5 4 2 37 37 H 0.97005 * 120.00049 * 0.02562 * 9 7 2 38 38 H 1.09003 * 109.47256 * 65.00108 * 12 10 9 39 39 H 1.09006 * 109.46840 * 184.99850 * 12 10 9 40 40 H 1.00904 * 110.99799 * 56.05665 * 13 12 10 41 41 H 1.09001 * 109.46806 * 300.00799 * 14 13 12 42 42 H 1.09006 * 109.46877 * 60.00128 * 14 13 12 43 43 H 0.96994 * 120.00105 * 359.97438 * 17 15 14 44 44 H 0.96990 * 120.00770 * 180.02562 * 21 20 18 45 45 H 1.09002 * 115.54973 * 210.58024 * 26 10 9 46 46 H 1.09001 * 117.49733 * 214.97413 * 27 26 10 47 47 H 1.08995 * 117.49577 * 359.97438 * 27 26 10 48 48 H 1.09004 * 117.50150 * 252.51496 * 28 27 26 49 49 H 1.09004 * 117.49681 * 107.48417 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 1.7068 -0.2501 -2.4545 6 8 2.7297 -1.6965 -1.1191 7 6 2.0324 -0.7104 1.2305 8 8 2.7297 -1.6965 1.1192 9 7 1.7068 -0.2499 2.4546 10 6 2.1956 -0.9402 3.6508 11 1 3.1949 -1.3320 3.4613 12 6 2.2468 0.0431 4.8218 13 7 3.0570 1.2096 4.4466 14 6 3.1292 2.1772 5.5496 15 6 3.9658 3.3576 5.1284 16 8 4.4537 3.3900 4.0184 17 7 4.1721 4.3775 5.9851 18 6 4.9329 5.4516 5.6017 19 1 5.3673 5.4805 4.6133 20 6 5.1450 6.5032 6.4846 21 7 4.6161 6.4685 7.6872 22 14 6.1822 7.9665 5.9625 23 1 5.3101 8.9937 5.3382 24 1 6.8556 8.5459 7.1525 25 1 7.2053 7.5233 4.9817 26 6 1.2520 -2.0944 3.9949 27 6 -0.0059 -2.2582 3.1395 28 6 1.1521 -3.2475 2.9942 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.1488 0.5384 -2.5436 36 1 2.0304 -0.7072 -3.2465 37 1 1.1489 0.5386 2.5436 38 1 1.2358 0.3671 5.0687 39 1 2.6933 -0.4460 5.6877 40 1 2.7004 1.6428 3.6080 41 1 2.1244 2.5160 5.8020 42 1 3.5820 1.7027 6.4202 43 1 3.7817 4.3518 6.8726 44 1 4.7639 7.2027 8.3035 45 1 1.1756 -2.3393 5.0543 46 1 -0.9099 -2.6108 3.6361 47 1 -0.1617 -1.5433 2.3316 48 1 1.7583 -3.1837 2.0906 49 1 1.0100 -4.2511 3.3954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483566607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:36 Heat of formation + Delta-G solvation = -81.598178 kcal Electronic energy + Delta-G solvation = -30699.272223 eV Core-core repulsion = 26469.231258 eV Total energy + Delta-G solvation = -4230.040965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.09565 -39.33161 -38.27216 -37.19602 -35.61129 -35.32651 -33.94686 -33.47459 -32.98888 -31.24427 -29.52213 -27.81564 -26.38678 -24.64826 -24.17643 -22.63524 -22.43743 -21.90255 -20.12104 -19.80056 -19.24986 -18.12917 -17.87277 -16.87681 -16.51640 -16.38258 -15.95748 -15.82945 -15.31247 -15.21125 -14.69517 -14.53353 -14.28356 -14.21410 -14.02820 -13.76214 -13.50228 -13.20012 -12.79466 -12.73401 -12.62695 -12.54526 -12.41452 -12.04568 -11.86175 -11.79459 -11.57388 -11.55387 -11.52235 -11.36199 -11.05065 -10.44545 -10.41034 -10.24112 -10.13791 -9.99498 -9.84042 -9.53015 -9.34687 -9.00511 -8.48502 -8.09786 -7.98148 -6.43854 -3.84748 2.44235 2.68743 2.81698 3.15928 3.25035 3.31134 3.36877 3.76264 3.88298 4.01599 4.21976 4.31516 4.34625 4.57482 4.71805 4.76910 4.84921 4.93553 5.04318 5.07152 5.16370 5.21419 5.23845 5.29892 5.34378 5.34892 5.39743 5.56270 5.63312 5.65591 5.73599 5.86100 5.87185 5.94093 5.95475 6.08263 6.23589 6.31428 6.47586 6.57657 7.07555 7.13562 7.41909 7.53185 7.59215 8.04064 8.08932 8.28758 8.58977 9.15810 9.52041 10.03371 10.73885 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.002607 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.030579 B =10739.576238 C =12252.588211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.526 3.474 5 N -0.858 5.858 6 O -0.495 6.495 7 C 0.527 3.473 8 O -0.488 6.488 9 N -0.720 5.720 10 C 0.181 3.819 11 H 0.102 0.898 12 C 0.055 3.945 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.167 4.167 27 C -0.179 4.179 28 C -0.182 4.182 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.398 0.602 36 H 0.402 0.598 37 H 0.395 0.605 38 H 0.033 0.967 39 H 0.087 0.913 40 H 0.347 0.653 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.110 0.890 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.118 0.882 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.232 -12.543 -11.859 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C -0.199 4.199 4 C 0.308 3.692 5 N -0.423 5.423 6 O -0.366 6.366 7 C 0.311 3.689 8 O -0.360 6.360 9 N -0.373 5.373 10 C 0.076 3.924 11 H 0.120 0.880 12 C -0.075 4.075 13 N -0.299 5.299 14 C -0.083 4.083 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.187 4.187 27 C -0.216 4.216 28 C -0.219 4.219 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.226 0.774 36 H 0.233 0.767 37 H 0.229 0.771 38 H 0.051 0.949 39 H 0.106 0.894 40 H 0.166 0.834 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.128 0.872 46 H 0.106 0.894 47 H 0.111 0.889 48 H 0.137 0.863 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.282 -14.058 -12.085 22.805 hybrid contribution -1.168 1.866 0.189 2.210 sum -14.450 -12.192 -11.896 22.337 Atomic orbital electron populations 1.21889 0.90727 1.03408 1.03773 1.20918 0.98541 0.98169 0.93590 1.21874 1.03152 0.91100 1.03762 1.19876 0.80412 0.84474 0.84456 1.43817 1.56657 1.34047 1.07824 1.90899 1.35141 1.24701 1.85885 1.19711 0.80736 0.84730 0.83767 1.90782 1.35045 1.24576 1.85601 1.45938 1.54128 1.31942 1.05330 1.20514 0.97981 0.90431 0.83457 0.88038 1.22232 0.95751 0.92277 0.97267 1.59990 1.55314 1.08410 1.06160 1.21692 0.98667 0.93093 0.94801 1.19797 0.86360 0.84562 0.86740 1.90528 1.54186 1.80276 1.21641 1.41863 1.45994 1.17125 1.15031 1.19697 1.26510 0.95573 1.01087 0.87932 1.25257 0.98183 0.99352 0.95125 1.69607 1.44992 1.33542 1.06199 0.85864 0.79747 0.80700 0.78030 1.20437 1.20911 1.19377 1.22717 0.99800 0.98800 0.97364 1.22922 0.92251 1.03475 1.02937 1.23322 1.02051 0.93890 1.02605 0.90716 0.90861 0.91424 0.90780 0.91026 0.90453 0.77362 0.76687 0.77069 0.94857 0.89427 0.83359 0.93881 0.89449 0.77473 0.91861 0.87233 0.89438 0.88949 0.86347 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 7.83 37.16 0.29 -0.54 16 2 C -0.11 -0.99 0.72 -156.81 -0.11 -1.10 16 3 C -0.14 -1.19 8.27 37.16 0.31 -0.88 16 4 C 0.53 5.99 6.74 -10.99 -0.07 5.92 16 5 N -0.86 -5.67 8.66 31.22 0.27 -5.40 16 6 O -0.50 -8.36 15.02 -18.96 -0.28 -8.65 16 7 C 0.53 6.66 5.16 -10.99 -0.06 6.60 16 8 O -0.49 -8.37 11.16 -18.96 -0.21 -8.58 16 9 N -0.72 -7.53 2.80 -53.80 -0.15 -7.68 16 10 C 0.18 2.08 2.72 -67.93 -0.18 1.89 16 11 H 0.10 1.49 7.58 -51.93 -0.39 1.09 16 12 C 0.05 0.62 5.26 -3.83 -0.02 0.60 16 13 N -0.67 -10.14 6.12 -115.06 -0.70 -10.85 16 14 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 15 C 0.44 10.11 7.82 -10.99 -0.09 10.02 16 16 O -0.58 -15.45 15.78 5.55 0.09 -15.37 16 17 N -0.56 -13.99 5.29 -10.97 -0.06 -14.05 16 18 C -0.30 -8.23 9.68 -14.94 -0.14 -8.37 16 19 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 22 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C -0.17 -1.69 5.73 -90.61 -0.52 -2.21 16 27 C -0.18 -1.68 9.68 -26.73 -0.26 -1.94 16 28 C -0.18 -2.06 9.85 -26.73 -0.26 -2.33 16 29 H 0.07 0.35 7.56 -51.93 -0.39 -0.04 16 30 H 0.07 0.27 7.56 -51.93 -0.39 -0.13 16 31 H 0.07 0.46 8.13 -51.92 -0.42 0.04 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.40 7.57 -51.93 -0.39 0.01 16 34 H 0.08 0.60 7.56 -51.93 -0.39 0.21 16 35 H 0.40 1.37 7.67 -40.82 -0.31 1.06 16 36 H 0.40 2.33 8.93 -40.82 -0.36 1.97 16 37 H 0.39 3.30 6.99 -40.82 -0.29 3.02 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.35 5.30 7.28 -39.29 -0.29 5.01 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.11 0.97 8.08 -51.93 -0.42 0.55 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 0.85 5.95 -51.93 -0.31 0.54 16 48 H 0.12 1.71 5.25 -51.93 -0.27 1.44 16 49 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 396.33 15.07 5.97 5.97 Total: -1.00 -36.87 396.33 -8.05 -44.93 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -7.43 Total: 18.44 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -1.25 Total: 8.96 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.08 Total: -61.49 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.41 Total: -32.59 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.87 -8.05 -44.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483566607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.672 kcal (2) G-P(sol) polarization free energy of solvation -36.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds