Wall clock time and date at job start Sat Apr 11 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46986 * 2 1 4 4 C 1.50702 * 109.46990 * 239.99878 * 2 1 3 5 5 N 1.34771 * 120.00083 * 59.99861 * 4 2 1 6 6 O 1.21281 * 119.99700 * 239.99778 * 4 2 1 7 7 C 1.50702 * 109.47093 * 120.00062 * 2 1 3 8 8 O 1.21280 * 120.00009 * 120.00193 * 7 2 1 9 9 N 1.34774 * 119.99889 * 299.99736 * 7 2 1 10 10 C 1.46505 * 120.00190 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46653 * 34.99978 * 10 9 7 12 12 C 1.52995 * 109.47041 * 155.00108 * 10 9 7 13 13 N 1.46896 * 109.47189 * 304.99655 * 12 10 9 14 14 C 1.46904 * 111.00207 * 180.02562 * 13 12 10 15 15 C 1.50691 * 109.47414 * 180.02562 * 14 13 12 16 16 O 1.21292 * 120.00322 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00048 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00176 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00012 * 359.97438 * 18 17 15 20 20 C 1.38941 * 120.00209 * 179.97438 * 18 17 15 21 21 N 1.31417 * 120.00400 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00199 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46798 * 89.99999 * 22 20 18 24 24 H 1.48499 * 109.47698 * 209.99785 * 22 20 18 25 25 H 1.48495 * 109.47351 * 330.00184 * 22 20 18 26 26 C 1.53003 * 109.46936 * 275.00149 * 10 9 7 27 27 C 1.53001 * 117.51964 * 356.28241 * 26 10 9 28 28 C 1.52999 * 60.00190 * 107.47982 * 27 26 10 29 29 H 1.08996 * 109.46723 * 299.99732 * 1 2 3 30 30 H 1.08992 * 109.47072 * 60.00012 * 1 2 3 31 31 H 1.09007 * 109.46563 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46714 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47166 * 299.99640 * 3 2 1 34 34 H 1.09000 * 109.46980 * 60.00060 * 3 2 1 35 35 H 0.97004 * 120.00016 * 359.97438 * 5 4 2 36 36 H 0.97003 * 119.99953 * 179.97438 * 5 4 2 37 37 H 0.97005 * 120.00049 * 0.02562 * 9 7 2 38 38 H 1.09003 * 109.47256 * 65.00108 * 12 10 9 39 39 H 1.09006 * 109.46840 * 184.99850 * 12 10 9 40 40 H 1.00904 * 110.99799 * 56.05665 * 13 12 10 41 41 H 1.09001 * 109.46806 * 300.00799 * 14 13 12 42 42 H 1.09006 * 109.46877 * 60.00128 * 14 13 12 43 43 H 0.96994 * 120.00105 * 359.97438 * 17 15 14 44 44 H 0.96990 * 120.00770 * 180.02562 * 21 20 18 45 45 H 1.09002 * 115.54973 * 210.58024 * 26 10 9 46 46 H 1.09001 * 117.49733 * 214.97413 * 27 26 10 47 47 H 1.08995 * 117.49577 * 359.97438 * 27 26 10 48 48 H 1.09004 * 117.50150 * 252.51496 * 28 27 26 49 49 H 1.09004 * 117.49681 * 107.48417 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 1.7068 -0.2501 -2.4545 6 8 2.7297 -1.6965 -1.1191 7 6 2.0324 -0.7104 1.2305 8 8 2.7297 -1.6965 1.1192 9 7 1.7068 -0.2499 2.4546 10 6 2.1956 -0.9402 3.6508 11 1 3.1949 -1.3320 3.4613 12 6 2.2468 0.0431 4.8218 13 7 3.0570 1.2096 4.4466 14 6 3.1292 2.1772 5.5496 15 6 3.9658 3.3576 5.1284 16 8 4.4537 3.3900 4.0184 17 7 4.1721 4.3775 5.9851 18 6 4.9329 5.4516 5.6017 19 1 5.3673 5.4805 4.6133 20 6 5.1450 6.5032 6.4846 21 7 4.6161 6.4685 7.6872 22 14 6.1822 7.9665 5.9625 23 1 5.3101 8.9937 5.3382 24 1 6.8556 8.5459 7.1525 25 1 7.2053 7.5233 4.9817 26 6 1.2520 -2.0944 3.9949 27 6 -0.0059 -2.2582 3.1395 28 6 1.1521 -3.2475 2.9942 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.1488 0.5384 -2.5436 36 1 2.0304 -0.7072 -3.2465 37 1 1.1489 0.5386 2.5436 38 1 1.2358 0.3671 5.0687 39 1 2.6933 -0.4460 5.6877 40 1 2.7004 1.6428 3.6080 41 1 2.1244 2.5160 5.8020 42 1 3.5820 1.7027 6.4202 43 1 3.7817 4.3518 6.8726 44 1 4.7639 7.2027 8.3035 45 1 1.1756 -2.3393 5.0543 46 1 -0.9099 -2.6108 3.6361 47 1 -0.1617 -1.5433 2.3316 48 1 1.7583 -3.1837 2.0906 49 1 1.0100 -4.2511 3.3954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483566607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:35 Heat of formation + Delta-G solvation = -112.181326 kcal Electronic energy + Delta-G solvation = -30700.598408 eV Core-core repulsion = 26469.231258 eV Total energy + Delta-G solvation = -4231.367149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.99418 -40.32982 -39.97731 -38.18753 -36.74923 -36.25187 -35.82552 -34.45573 -33.83118 -33.22544 -30.63023 -28.39215 -27.92940 -25.88213 -25.37298 -23.59743 -23.27130 -22.85787 -21.20280 -20.89068 -20.59339 -19.88559 -18.88013 -17.86000 -17.74937 -17.30950 -17.11574 -16.81782 -16.65274 -16.32512 -16.04911 -15.93260 -15.52809 -15.21129 -15.02135 -14.94267 -14.89151 -14.36565 -14.05021 -13.53898 -13.46359 -13.39701 -13.29320 -13.24889 -13.14632 -12.96194 -12.86690 -12.72461 -12.64018 -12.40131 -12.27333 -12.21675 -12.12107 -11.48674 -11.27392 -11.02675 -10.86871 -10.61414 -10.33430 -10.31618 -9.99219 -9.94319 -9.28297 -8.45217 -5.93487 1.38683 1.42966 1.55254 1.58111 1.75273 1.98980 2.08107 2.30007 2.61470 2.83487 3.00676 3.22644 3.47487 3.55727 3.70305 3.81486 3.90034 4.00735 4.06709 4.12732 4.29059 4.34280 4.38558 4.49560 4.55506 4.62180 4.65245 4.66426 4.73696 4.76426 4.78138 4.83611 4.99734 5.05143 5.14582 5.18809 5.29128 5.40062 5.42666 5.57582 5.88909 5.92656 6.11036 6.42233 6.44951 6.57622 6.62480 7.14930 7.30659 7.44393 7.59124 8.14617 8.72152 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.002607 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.030579 B =10739.576238 C =12252.588211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 C -0.139 4.139 4 C 0.518 3.482 5 N -0.832 5.832 6 O -0.561 6.561 7 C 0.518 3.482 8 O -0.540 6.540 9 N -0.707 5.707 10 C 0.184 3.816 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.687 5.687 14 C 0.066 3.934 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.573 5.573 18 C -0.332 4.332 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.269 1.269 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.160 4.160 27 C -0.159 4.159 28 C -0.204 4.204 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.417 0.583 36 H 0.408 0.592 37 H 0.408 0.592 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.344 0.656 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.130 0.870 46 H 0.109 0.891 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.983 -11.202 -11.323 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 C -0.197 4.197 4 C 0.302 3.698 5 N -0.398 5.398 6 O -0.438 6.438 7 C 0.303 3.697 8 O -0.416 6.416 9 N -0.361 5.361 10 C 0.079 3.921 11 H 0.079 0.921 12 C -0.066 4.066 13 N -0.320 5.320 14 C -0.067 4.067 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.211 5.211 18 C -0.462 4.462 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.194 1.194 24 H -0.197 1.197 25 H -0.200 1.200 26 C -0.180 4.180 27 C -0.197 4.197 28 C -0.241 4.241 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.249 0.751 36 H 0.240 0.760 37 H 0.245 0.755 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.164 0.836 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.148 0.852 46 H 0.127 0.873 47 H 0.113 0.887 48 H 0.101 0.899 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.107 -12.663 -11.548 23.519 hybrid contribution -0.303 1.409 -0.045 1.442 sum -16.410 -11.254 -11.593 23.029 Atomic orbital electron populations 1.21968 0.87452 1.03622 1.06382 1.20920 1.00918 0.97668 0.91033 1.21915 1.00983 0.90737 1.06038 1.20336 0.79599 0.83802 0.86112 1.43606 1.55545 1.34074 1.06617 1.90877 1.38276 1.27726 1.86921 1.20380 0.79977 0.84227 0.85121 1.90776 1.37387 1.26999 1.86398 1.45823 1.53654 1.32014 1.04618 1.20358 0.96614 0.91207 0.83960 0.92131 1.22249 0.96791 0.90496 0.97070 1.59939 1.57292 1.08989 1.05808 1.21545 0.98949 0.90788 0.95384 1.20927 0.85579 0.85313 0.85713 1.90502 1.55714 1.81280 1.23448 1.41924 1.46265 1.17303 1.15558 1.19639 1.28331 0.97507 1.00689 0.90437 1.25990 0.98846 1.01307 0.95017 1.69662 1.45397 1.34381 1.06691 0.84970 0.78165 0.77645 0.77831 1.19384 1.19726 1.20021 1.22698 0.99811 0.97311 0.98158 1.23009 0.92217 1.01987 1.02438 1.23203 1.03667 0.95145 1.02052 0.88742 0.87699 0.92377 0.94230 0.87562 0.89420 0.75074 0.76010 0.75496 0.91773 0.88562 0.83613 0.90673 0.87854 0.76932 0.91332 0.85193 0.87280 0.88713 0.89867 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 7.83 71.98 0.56 -0.70 16 2 C -0.10 -1.80 0.72 -53.67 -0.04 -1.84 16 3 C -0.14 -2.19 8.27 71.98 0.60 -1.59 16 4 C 0.52 12.04 6.74 87.66 0.59 12.63 16 5 N -0.83 -10.03 8.66 -173.54 -1.50 -11.54 16 6 O -0.56 -20.39 15.02 20.41 0.31 -20.08 16 7 C 0.52 13.55 5.16 87.66 0.45 14.01 16 8 O -0.54 -20.14 11.16 20.41 0.23 -19.91 16 9 N -0.71 -14.44 2.80 -442.53 -1.24 -15.68 16 10 C 0.18 4.15 2.72 44.99 0.12 4.27 16 11 H 0.06 1.89 7.58 -2.39 -0.02 1.88 16 12 C 0.06 1.28 5.26 86.30 0.45 1.73 16 13 N -0.69 -19.98 6.12 -517.93 -3.17 -23.15 16 14 C 0.07 2.06 6.17 85.55 0.53 2.58 16 15 C 0.44 19.99 7.82 87.65 0.69 20.68 16 16 O -0.62 -33.66 15.78 -3.07 -0.05 -33.71 16 17 N -0.57 -28.52 5.29 -307.00 -1.62 -30.14 16 18 C -0.33 -18.53 9.68 84.04 0.81 -17.71 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.61 16 20 C -0.01 -0.62 5.50 84.92 0.47 -0.16 16 21 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 22 Si 0.99 42.33 29.55 68.60 2.03 44.36 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 C -0.16 -3.02 5.73 -10.79 -0.06 -3.08 16 27 C -0.16 -2.69 9.68 30.59 0.30 -2.39 16 28 C -0.20 -4.69 9.85 30.60 0.30 -4.39 16 29 H 0.09 0.53 7.56 -2.39 -0.02 0.51 16 30 H 0.10 0.32 7.56 -2.39 -0.02 0.30 16 31 H 0.06 0.69 8.13 -2.38 -0.02 0.67 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 0.89 7.57 -2.39 -0.02 0.87 16 34 H 0.09 1.20 7.56 -2.39 -0.02 1.18 16 35 H 0.42 1.72 7.67 -92.71 -0.71 1.01 16 36 H 0.41 4.41 8.93 -92.71 -0.83 3.59 16 37 H 0.41 6.01 6.99 -92.70 -0.65 5.37 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.34 10.16 7.28 -89.69 -0.65 9.51 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.10 2.96 8.14 -2.38 -0.02 2.95 16 43 H 0.40 18.65 7.90 -92.71 -0.73 17.91 16 44 H 0.28 13.77 8.31 -92.72 -0.77 13.00 16 45 H 0.13 1.94 8.08 -2.39 -0.02 1.92 16 46 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.09 1.54 5.95 -2.39 -0.01 1.53 16 48 H 0.08 2.62 5.25 -2.39 -0.01 2.60 16 49 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -86.45 396.33 -1.50 -87.96 By element: Atomic # 1 Polarization: 48.89 SS G_CDS: -2.53 Total: 46.36 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: 5.77 Total: 24.04 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -7.25 Total: -129.01 kcal Atomic # 8 Polarization: -74.19 SS G_CDS: 0.49 Total: -73.70 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -86.45 -1.50 -87.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483566607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.226 kcal (2) G-P(sol) polarization free energy of solvation -86.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds