Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47116 * 2 1 4 4 C 1.50702 * 109.47139 * 239.99906 * 2 1 3 5 5 N 1.34769 * 120.00015 * 60.00376 * 4 2 1 6 6 O 1.21278 * 119.99890 * 239.99686 * 4 2 1 7 7 C 1.50696 * 109.46991 * 119.99856 * 2 1 3 8 8 O 1.21287 * 120.00193 * 120.00513 * 7 2 1 9 9 N 1.34782 * 120.00001 * 300.00099 * 7 2 1 10 10 C 1.46495 * 119.99768 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47533 * 324.99655 * 10 9 7 12 12 C 1.53008 * 109.46950 * 204.99782 * 10 9 7 13 13 N 1.46902 * 109.46622 * 55.00075 * 12 10 9 14 14 C 1.46906 * 110.99573 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46990 * 180.02562 * 14 13 12 16 16 O 1.21287 * 119.99883 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99971 * 179.97438 * 15 14 13 18 18 C 1.37104 * 120.00013 * 179.97438 * 17 15 14 19 19 H 1.07992 * 119.99812 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99796 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00211 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99595 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46808 * 90.00114 * 22 20 18 24 24 H 1.48498 * 109.47199 * 210.00000 * 22 20 18 25 25 H 1.48501 * 109.47591 * 330.00470 * 22 20 18 26 26 C 1.53007 * 109.47494 * 85.00082 * 10 9 7 27 27 C 1.52997 * 117.49383 * 8.74457 * 26 10 9 28 28 C 1.52996 * 117.49411 * 300.08793 * 26 10 9 29 29 H 1.08992 * 109.47523 * 300.00073 * 1 2 3 30 30 H 1.09003 * 109.47063 * 60.00534 * 1 2 3 31 31 H 1.09004 * 109.47130 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47252 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46747 * 300.00202 * 3 2 1 34 34 H 1.09001 * 109.46784 * 59.99494 * 3 2 1 35 35 H 0.96998 * 120.00191 * 359.97438 * 5 4 2 36 36 H 0.97003 * 120.00274 * 180.02562 * 5 4 2 37 37 H 0.96998 * 119.99827 * 359.97438 * 9 7 2 38 38 H 1.08990 * 109.46924 * 295.00213 * 12 10 9 39 39 H 1.09004 * 109.46978 * 175.00090 * 12 10 9 40 40 H 1.00896 * 111.00219 * 303.95583 * 13 12 10 41 41 H 1.09002 * 109.46991 * 299.99841 * 14 13 12 42 42 H 1.09000 * 109.47202 * 60.00133 * 14 13 12 43 43 H 0.97000 * 120.00083 * 0.02562 * 17 15 14 44 44 H 0.96998 * 120.00198 * 179.97438 * 21 20 18 45 45 H 1.08993 * 115.54938 * 154.41199 * 26 10 9 46 46 H 1.08997 * 117.50408 * 0.02562 * 27 26 10 47 47 H 1.09004 * 117.49795 * 145.02104 * 27 26 10 48 48 H 1.09008 * 117.49289 * 214.97558 * 28 26 10 49 49 H 1.08997 * 117.50631 * 359.97033 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7068 -0.2500 -2.4545 6 8 2.7296 -1.6965 -1.1191 7 6 2.0323 -0.7104 1.2305 8 8 2.7296 -1.6965 1.1193 9 7 1.7066 -0.2499 2.4546 10 6 2.1954 -0.9401 3.6507 11 1 2.2324 -2.0129 3.4616 12 6 1.2514 -0.6611 4.8221 13 7 -0.1183 -1.0372 4.4473 14 6 -1.0545 -0.7832 5.5505 15 6 -2.4460 -1.1809 5.1302 16 8 -2.6387 -1.6320 4.0209 17 7 -3.4760 -1.0362 5.9871 18 6 -4.7420 -1.3975 5.6045 19 1 -4.9139 -1.7976 4.6163 20 6 -5.8041 -1.2478 6.4880 21 7 -5.5951 -0.7596 7.6900 22 14 -7.5291 -1.7394 5.9664 23 1 -7.7643 -3.1639 6.3141 24 1 -8.5209 -0.8877 6.6707 25 1 -7.6735 -1.5577 4.4996 26 6 3.5979 -0.4341 3.9944 27 6 4.1231 0.7741 3.2166 28 6 4.6932 -0.6198 2.9425 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.1489 0.5385 -2.5436 36 1 2.0298 -0.7075 -3.2466 37 1 1.1493 0.5390 2.5435 38 1 1.2822 0.4000 5.0687 39 1 1.5644 -1.2447 5.6879 40 1 -0.4085 -0.5572 3.6086 41 1 -0.7573 -1.3679 6.4211 42 1 -1.0398 0.2771 5.8027 43 1 -3.3218 -0.6758 6.8744 44 1 -6.3366 -0.6548 8.3065 45 1 3.8858 -0.5223 5.0419 46 1 3.4695 1.2088 2.4604 47 1 4.7571 1.4807 3.7523 48 1 5.7020 -0.8297 3.2981 49 1 4.4149 -1.1028 2.0058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483566610.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -81.223189 kcal Electronic energy + Delta-G solvation = -30704.614710 eV Core-core repulsion = 26474.590006 eV Total energy + Delta-G solvation = -4230.024704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.10167 -39.33906 -38.27250 -37.20118 -35.60544 -35.32636 -33.94506 -33.47525 -32.98634 -31.24475 -29.51859 -27.81343 -26.38807 -24.64981 -24.18054 -22.64213 -22.46428 -21.90373 -20.09927 -19.78929 -19.24991 -18.13080 -17.87342 -16.87473 -16.52271 -16.41314 -15.95870 -15.82970 -15.31419 -15.21416 -14.68354 -14.53461 -14.28006 -14.22131 -14.02155 -13.75975 -13.50511 -13.20600 -12.79612 -12.73557 -12.62086 -12.55072 -12.41555 -12.06839 -11.86357 -11.79347 -11.58472 -11.54804 -11.52654 -11.34833 -11.05013 -10.45679 -10.41260 -10.24171 -10.13346 -9.99360 -9.84147 -9.52927 -9.35378 -8.99991 -8.48391 -8.09742 -7.98140 -6.43910 -3.84739 2.43977 2.68179 2.81703 3.16338 3.25140 3.30508 3.36963 3.74673 3.88421 4.02251 4.22047 4.31232 4.34528 4.57394 4.71904 4.77074 4.84744 4.92489 5.04368 5.06987 5.16882 5.21299 5.23973 5.30014 5.34364 5.34765 5.39187 5.56275 5.62992 5.65509 5.73743 5.86278 5.87069 5.94231 5.95533 6.07300 6.23631 6.30441 6.47374 6.57577 7.07465 7.13608 7.41372 7.53166 7.59296 8.04113 8.08723 8.28199 8.58986 9.15802 9.52070 10.03412 10.73829 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.002608 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.160408 B =10733.170038 C =12242.300593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.140 4.140 4 C 0.526 3.474 5 N -0.858 5.858 6 O -0.495 6.495 7 C 0.527 3.473 8 O -0.488 6.488 9 N -0.720 5.720 10 C 0.181 3.819 11 H 0.102 0.898 12 C 0.055 3.945 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.166 4.166 27 C -0.179 4.179 28 C -0.183 4.183 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.398 0.602 36 H 0.402 0.598 37 H 0.395 0.605 38 H 0.033 0.967 39 H 0.087 0.913 40 H 0.347 0.653 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.863 10.267 -11.881 23.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.198 4.198 4 C 0.308 3.692 5 N -0.423 5.423 6 O -0.366 6.366 7 C 0.311 3.689 8 O -0.360 6.360 9 N -0.373 5.373 10 C 0.076 3.924 11 H 0.120 0.880 12 C -0.075 4.075 13 N -0.299 5.299 14 C -0.083 4.083 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.186 4.186 27 C -0.216 4.216 28 C -0.220 4.220 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.226 0.774 36 H 0.233 0.767 37 H 0.229 0.771 38 H 0.051 0.949 39 H 0.106 0.894 40 H 0.166 0.834 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.128 0.872 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.641 7.935 -12.110 22.822 hybrid contribution -1.364 1.693 0.201 2.183 sum 16.277 9.628 -11.909 22.348 Atomic orbital electron populations 1.21875 0.89836 1.04419 1.03764 1.20916 0.99240 0.97478 0.93583 1.21884 1.02190 0.91948 1.03753 1.19874 0.80388 0.84497 0.84456 1.43816 1.56648 1.34054 1.07824 1.90899 1.35372 1.24473 1.85885 1.19716 0.80765 0.84675 0.83770 1.90788 1.35284 1.24287 1.85617 1.45929 1.53986 1.32070 1.05342 1.20511 0.89970 0.98463 0.83444 0.88016 1.22225 0.89164 0.98865 0.97270 1.59987 1.00013 1.63725 1.06151 1.21693 0.92598 0.99165 0.94799 1.19796 0.85625 0.85302 0.86735 1.90527 1.84615 1.49788 1.21698 1.41864 1.06737 1.56361 1.15053 1.19699 0.82761 1.39314 1.01107 0.87932 1.25259 1.00275 0.97234 0.95147 1.69609 1.33188 1.45305 1.06227 0.85864 0.81239 0.78414 0.78808 1.20367 1.20944 1.19424 1.22704 0.94846 1.03371 0.97683 1.22929 1.03869 0.91305 1.03531 1.23351 0.97352 0.99235 1.02049 0.90456 0.91023 0.90776 0.91410 0.90866 0.90741 0.77362 0.76685 0.77067 0.94852 0.89435 0.83364 0.89454 0.93878 0.77472 0.91862 0.87205 0.88966 0.89428 0.89541 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.27 37.16 0.31 -0.88 16 2 C -0.11 -0.99 0.72 -156.81 -0.11 -1.10 16 3 C -0.14 -0.83 8.07 37.16 0.30 -0.53 16 4 C 0.53 5.99 6.74 -10.99 -0.07 5.91 16 5 N -0.86 -5.66 8.66 31.22 0.27 -5.39 16 6 O -0.50 -8.36 15.02 -18.96 -0.28 -8.64 16 7 C 0.53 6.65 5.31 -10.98 -0.06 6.60 16 8 O -0.49 -8.37 11.21 -18.96 -0.21 -8.58 16 9 N -0.72 -7.52 2.68 -53.80 -0.14 -7.66 16 10 C 0.18 2.08 2.74 -67.93 -0.19 1.89 16 11 H 0.10 1.49 7.58 -51.93 -0.39 1.10 16 12 C 0.05 0.62 5.28 -3.82 -0.02 0.60 16 13 N -0.67 -10.14 6.12 -115.05 -0.70 -10.85 16 14 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 15 C 0.44 10.11 7.82 -10.99 -0.09 10.02 16 16 O -0.58 -15.46 15.78 5.55 0.09 -15.37 16 17 N -0.56 -13.99 5.29 -10.97 -0.06 -14.05 16 18 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 22 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 C -0.17 -1.68 5.71 -90.62 -0.52 -2.20 16 27 C -0.18 -1.66 9.74 -26.70 -0.26 -1.92 16 28 C -0.18 -2.07 9.82 -26.70 -0.26 -2.33 16 29 H 0.08 0.60 7.56 -51.93 -0.39 0.21 16 30 H 0.07 0.40 7.56 -51.93 -0.39 0.01 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.26 7.56 -51.93 -0.39 -0.13 16 34 H 0.07 0.35 7.56 -51.93 -0.39 -0.05 16 35 H 0.40 1.37 7.67 -40.82 -0.31 1.05 16 36 H 0.40 2.33 8.93 -40.82 -0.36 1.96 16 37 H 0.39 3.29 6.99 -40.82 -0.29 3.01 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.35 5.30 7.28 -39.29 -0.29 5.01 16 41 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.11 0.98 8.11 -51.93 -0.42 0.56 16 46 H 0.09 0.81 6.47 -51.93 -0.34 0.48 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 49 H 0.12 1.70 5.02 -51.93 -0.26 1.44 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -36.88 397.03 -8.05 -44.93 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -7.45 Total: 18.36 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.24 Total: 8.98 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.09 Total: -61.46 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.41 Total: -32.59 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.88 -8.05 -44.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483566610.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.297 kcal (2) G-P(sol) polarization free energy of solvation -36.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds