Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47116 * 2 1 4 4 C 1.50702 * 109.47139 * 239.99906 * 2 1 3 5 5 N 1.34769 * 120.00015 * 60.00376 * 4 2 1 6 6 O 1.21278 * 119.99890 * 239.99686 * 4 2 1 7 7 C 1.50696 * 109.46991 * 119.99856 * 2 1 3 8 8 O 1.21287 * 120.00193 * 120.00513 * 7 2 1 9 9 N 1.34782 * 120.00001 * 300.00099 * 7 2 1 10 10 C 1.46495 * 119.99768 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47533 * 324.99655 * 10 9 7 12 12 C 1.53008 * 109.46950 * 204.99782 * 10 9 7 13 13 N 1.46902 * 109.46622 * 55.00075 * 12 10 9 14 14 C 1.46906 * 110.99573 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46990 * 180.02562 * 14 13 12 16 16 O 1.21287 * 119.99883 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99971 * 179.97438 * 15 14 13 18 18 C 1.37104 * 120.00013 * 179.97438 * 17 15 14 19 19 H 1.07992 * 119.99812 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99796 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00211 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99595 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46808 * 90.00114 * 22 20 18 24 24 H 1.48498 * 109.47199 * 210.00000 * 22 20 18 25 25 H 1.48501 * 109.47591 * 330.00470 * 22 20 18 26 26 C 1.53007 * 109.47494 * 85.00082 * 10 9 7 27 27 C 1.52997 * 117.49383 * 8.74457 * 26 10 9 28 28 C 1.52996 * 117.49411 * 300.08793 * 26 10 9 29 29 H 1.08992 * 109.47523 * 300.00073 * 1 2 3 30 30 H 1.09003 * 109.47063 * 60.00534 * 1 2 3 31 31 H 1.09004 * 109.47130 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47252 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46747 * 300.00202 * 3 2 1 34 34 H 1.09001 * 109.46784 * 59.99494 * 3 2 1 35 35 H 0.96998 * 120.00191 * 359.97438 * 5 4 2 36 36 H 0.97003 * 120.00274 * 180.02562 * 5 4 2 37 37 H 0.96998 * 119.99827 * 359.97438 * 9 7 2 38 38 H 1.08990 * 109.46924 * 295.00213 * 12 10 9 39 39 H 1.09004 * 109.46978 * 175.00090 * 12 10 9 40 40 H 1.00896 * 111.00219 * 303.95583 * 13 12 10 41 41 H 1.09002 * 109.46991 * 299.99841 * 14 13 12 42 42 H 1.09000 * 109.47202 * 60.00133 * 14 13 12 43 43 H 0.97000 * 120.00083 * 0.02562 * 17 15 14 44 44 H 0.96998 * 120.00198 * 179.97438 * 21 20 18 45 45 H 1.08993 * 115.54938 * 154.41199 * 26 10 9 46 46 H 1.08997 * 117.50408 * 0.02562 * 27 26 10 47 47 H 1.09004 * 117.49795 * 145.02104 * 27 26 10 48 48 H 1.09008 * 117.49289 * 214.97558 * 28 26 10 49 49 H 1.08997 * 117.50631 * 359.97033 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7068 -0.2500 -2.4545 6 8 2.7296 -1.6965 -1.1191 7 6 2.0323 -0.7104 1.2305 8 8 2.7296 -1.6965 1.1193 9 7 1.7066 -0.2499 2.4546 10 6 2.1954 -0.9401 3.6507 11 1 2.2324 -2.0129 3.4616 12 6 1.2514 -0.6611 4.8221 13 7 -0.1183 -1.0372 4.4473 14 6 -1.0545 -0.7832 5.5505 15 6 -2.4460 -1.1809 5.1302 16 8 -2.6387 -1.6320 4.0209 17 7 -3.4760 -1.0362 5.9871 18 6 -4.7420 -1.3975 5.6045 19 1 -4.9139 -1.7976 4.6163 20 6 -5.8041 -1.2478 6.4880 21 7 -5.5951 -0.7596 7.6900 22 14 -7.5291 -1.7394 5.9664 23 1 -7.7643 -3.1639 6.3141 24 1 -8.5209 -0.8877 6.6707 25 1 -7.6735 -1.5577 4.4996 26 6 3.5979 -0.4341 3.9944 27 6 4.1231 0.7741 3.2166 28 6 4.6932 -0.6198 2.9425 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.1489 0.5385 -2.5436 36 1 2.0298 -0.7075 -3.2466 37 1 1.1493 0.5390 2.5435 38 1 1.2822 0.4000 5.0687 39 1 1.5644 -1.2447 5.6879 40 1 -0.4085 -0.5572 3.6086 41 1 -0.7573 -1.3679 6.4211 42 1 -1.0398 0.2771 5.8027 43 1 -3.3218 -0.6758 6.8744 44 1 -6.3366 -0.6548 8.3065 45 1 3.8858 -0.5223 5.0419 46 1 3.4695 1.2088 2.4604 47 1 4.7571 1.4807 3.7523 48 1 5.7020 -0.8297 3.2981 49 1 4.4149 -1.1028 2.0058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483566610.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -111.722732 kcal Electronic energy + Delta-G solvation = -30705.937270 eV Core-core repulsion = 26474.590006 eV Total energy + Delta-G solvation = -4231.347263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.99909 -40.33334 -39.97963 -38.19120 -36.74076 -36.25309 -35.82304 -34.45259 -33.82792 -33.22580 -30.62620 -28.38869 -27.92920 -25.88387 -25.37415 -23.60274 -23.29682 -22.85350 -21.19815 -20.85787 -20.59457 -19.88539 -18.88133 -17.85861 -17.74458 -17.34272 -17.12024 -16.81917 -16.65204 -16.32545 -16.05217 -15.92831 -15.51460 -15.21651 -15.01664 -14.94166 -14.89180 -14.37031 -14.03500 -13.54321 -13.45451 -13.40910 -13.29520 -13.25221 -13.15074 -12.96613 -12.87294 -12.72707 -12.64419 -12.39948 -12.27610 -12.19852 -12.10884 -11.49088 -11.27992 -11.02245 -10.86286 -10.61411 -10.33693 -10.31793 -9.99315 -9.93765 -9.28285 -8.45249 -5.93466 1.38813 1.42982 1.55060 1.57928 1.74950 1.99125 2.08208 2.29969 2.61634 2.82592 3.01152 3.22686 3.47631 3.55556 3.70310 3.82119 3.89885 4.00730 4.06877 4.12641 4.29458 4.34409 4.38342 4.50132 4.55318 4.62184 4.65115 4.66514 4.73724 4.76391 4.78267 4.84268 5.00347 5.05405 5.14721 5.18832 5.28804 5.39867 5.42698 5.57617 5.88922 5.92682 6.11050 6.42293 6.44931 6.57243 6.62481 7.14918 7.30364 7.44227 7.59150 8.14641 8.72120 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.002608 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.160408 B =10733.170038 C =12242.300593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 C -0.137 4.137 4 C 0.519 3.481 5 N -0.832 5.832 6 O -0.561 6.561 7 C 0.518 3.482 8 O -0.540 6.540 9 N -0.707 5.707 10 C 0.184 3.816 11 H 0.061 0.939 12 C 0.063 3.937 13 N -0.687 5.687 14 C 0.065 3.935 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.573 5.573 18 C -0.332 4.332 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.161 4.161 27 C -0.158 4.158 28 C -0.205 4.205 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.417 0.583 36 H 0.408 0.592 37 H 0.408 0.592 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.344 0.656 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.129 0.871 46 H 0.097 0.903 47 H 0.108 0.892 48 H 0.093 0.907 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.507 13.274 -11.351 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 C -0.194 4.194 4 C 0.302 3.698 5 N -0.398 5.398 6 O -0.438 6.438 7 C 0.303 3.697 8 O -0.416 6.416 9 N -0.361 5.361 10 C 0.079 3.921 11 H 0.079 0.921 12 C -0.066 4.066 13 N -0.320 5.320 14 C -0.067 4.067 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.211 5.211 18 C -0.462 4.462 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.200 1.200 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.181 4.181 27 C -0.195 4.195 28 C -0.242 4.242 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.249 0.751 36 H 0.240 0.760 37 H 0.245 0.755 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.164 0.836 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.147 0.853 46 H 0.115 0.885 47 H 0.127 0.873 48 H 0.111 0.889 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.260 11.027 -11.578 23.527 hybrid contribution -1.217 0.736 -0.030 1.423 sum 16.042 11.763 -11.608 23.032 Atomic orbital electron populations 1.21916 0.88884 1.02840 1.06042 1.20918 0.99638 0.98953 0.91026 1.21963 1.01634 0.89440 1.06370 1.20334 0.79594 0.83806 0.86112 1.43604 1.55516 1.34101 1.06618 1.90876 1.38590 1.27414 1.86920 1.20383 0.79963 0.84202 0.85123 1.90780 1.37665 1.26700 1.86415 1.45813 1.53559 1.32096 1.04627 1.20352 0.91320 0.96509 0.83939 0.92109 1.22241 0.86543 1.00731 0.97080 1.59937 1.01460 1.64828 1.05797 1.21546 0.88628 1.01109 0.95384 1.20925 0.87557 0.83343 0.85705 1.90500 1.85771 1.51164 1.23501 1.41925 1.06563 1.56983 1.15582 1.19643 0.84686 1.41141 1.00705 0.90426 1.25992 1.03408 0.96723 0.95038 1.69663 1.34403 1.45335 1.06718 0.84972 0.77045 0.78275 0.78328 1.20011 1.19478 1.19642 1.22682 0.93273 1.03850 0.98274 1.23018 1.03105 0.90469 1.02878 1.23233 0.98177 1.01493 1.01327 0.89418 0.87560 0.94224 0.92377 0.87705 0.88751 0.75077 0.76009 0.75492 0.91797 0.88581 0.83614 0.87867 0.90674 0.76933 0.91331 0.85336 0.88483 0.87333 0.88852 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.27 71.98 0.59 -1.59 16 2 C -0.10 -1.80 0.72 -53.67 -0.04 -1.83 16 3 C -0.14 -1.26 8.07 71.98 0.58 -0.68 16 4 C 0.52 12.03 6.74 87.66 0.59 12.62 16 5 N -0.83 -10.02 8.66 -173.54 -1.50 -11.52 16 6 O -0.56 -20.37 15.02 20.42 0.31 -20.07 16 7 C 0.52 13.55 5.31 87.65 0.47 14.02 16 8 O -0.54 -20.14 11.21 20.39 0.23 -19.92 16 9 N -0.71 -14.41 2.68 -442.51 -1.18 -15.60 16 10 C 0.18 4.16 2.74 45.00 0.12 4.28 16 11 H 0.06 1.90 7.58 -2.39 -0.02 1.88 16 12 C 0.06 1.28 5.28 86.31 0.46 1.74 16 13 N -0.69 -19.98 6.12 -517.91 -3.17 -23.15 16 14 C 0.07 2.06 6.17 85.56 0.53 2.58 16 15 C 0.44 19.99 7.82 87.66 0.69 20.68 16 16 O -0.62 -33.65 15.78 -3.05 -0.05 -33.70 16 17 N -0.57 -28.52 5.29 -307.00 -1.62 -30.14 16 18 C -0.33 -18.53 9.68 84.04 0.81 -17.71 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 21 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 22 Si 0.99 42.33 29.55 68.60 2.03 44.35 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C -0.16 -3.05 5.71 -10.79 -0.06 -3.11 16 27 C -0.16 -2.58 9.74 30.62 0.30 -2.28 16 28 C -0.21 -4.70 9.82 30.62 0.30 -4.40 16 29 H 0.09 1.19 7.56 -2.39 -0.02 1.17 16 30 H 0.11 0.88 7.56 -2.39 -0.02 0.87 16 31 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 0.32 7.56 -2.39 -0.02 0.30 16 34 H 0.09 0.52 7.56 -2.39 -0.02 0.50 16 35 H 0.42 1.71 7.67 -92.71 -0.71 1.00 16 36 H 0.41 4.41 8.93 -92.71 -0.83 3.58 16 37 H 0.41 5.99 6.99 -92.71 -0.65 5.34 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.34 10.16 7.28 -89.70 -0.65 9.51 16 41 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.40 18.65 7.90 -92.71 -0.73 17.92 16 44 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 45 H 0.13 1.96 8.11 -2.39 -0.02 1.94 16 46 H 0.10 1.48 6.47 -2.39 -0.02 1.47 16 47 H 0.11 1.37 8.14 -2.38 -0.02 1.36 16 48 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 49 H 0.08 2.63 5.02 -2.39 -0.01 2.62 16 Total: -1.00 -86.42 397.03 -1.41 -87.83 By element: Atomic # 1 Polarization: 48.78 SS G_CDS: -2.54 Total: 46.25 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 5.80 Total: 24.15 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -7.19 Total: -128.90 kcal Atomic # 8 Polarization: -74.17 SS G_CDS: 0.49 Total: -73.68 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -86.42 -1.41 -87.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483566610.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.888 kcal (2) G-P(sol) polarization free energy of solvation -86.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds