Wall clock time and date at job start Sat Apr 11 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46750 * 2 1 4 4 C 1.50702 * 109.46899 * 240.00154 * 2 1 3 5 5 N 1.34774 * 120.00141 * 60.00306 * 4 2 1 6 6 O 1.21283 * 119.99682 * 239.99887 * 4 2 1 7 7 C 1.50696 * 109.47069 * 120.00173 * 2 1 3 8 8 O 1.21287 * 119.99913 * 120.00163 * 7 2 1 9 9 N 1.34778 * 120.00005 * 299.99856 * 7 2 1 10 10 C 1.46496 * 120.00051 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.50100 * 35.08207 * 10 9 7 12 12 C 1.53122 * 109.50437 * 275.00393 * 10 9 7 13 13 C 1.53119 * 109.15843 * 182.36328 * 12 10 9 14 14 C 1.53045 * 109.27942 * 57.65498 * 13 12 10 15 15 N 1.46843 * 109.51801 * 300.81823 * 14 13 12 16 16 C 1.46902 * 110.99758 * 185.83903 * 15 14 13 17 17 C 1.50702 * 109.47027 * 66.04468 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99928 * 179.72353 * 17 16 15 20 20 C 1.37101 * 120.00327 * 180.27606 * 19 17 16 21 21 H 1.08001 * 119.99426 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00412 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47191 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46534 * 120.00189 * 24 22 20 27 27 H 1.48498 * 109.47283 * 240.00132 * 24 22 20 28 28 C 1.46845 * 111.20143 * 61.74309 * 15 14 13 29 29 H 1.09000 * 109.47099 * 299.99507 * 1 2 3 30 30 H 1.09005 * 109.46925 * 60.00047 * 1 2 3 31 31 H 1.08999 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46619 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47608 * 299.99759 * 3 2 1 34 34 H 1.09000 * 109.46917 * 60.00381 * 3 2 1 35 35 H 0.96999 * 120.00291 * 359.97438 * 5 4 2 36 36 H 0.96995 * 120.00229 * 180.02562 * 5 4 2 37 37 H 0.96997 * 120.00258 * 0.02562 * 9 7 2 38 38 H 1.08998 * 109.52375 * 62.46392 * 12 10 9 39 39 H 1.08998 * 109.57623 * 302.29936 * 12 10 9 40 40 H 1.08996 * 109.50539 * 297.71239 * 13 12 10 41 41 H 1.09002 * 109.53317 * 177.61228 * 13 12 10 42 42 H 1.08998 * 109.46085 * 180.80300 * 14 13 12 43 43 H 1.08997 * 109.45821 * 60.83502 * 14 13 12 44 44 H 1.09004 * 109.47131 * 306.04712 * 16 15 14 45 45 H 1.09000 * 109.47732 * 186.04822 * 16 15 14 46 46 H 0.97000 * 120.00317 * 0.28382 * 19 17 16 47 47 H 0.96996 * 120.00330 * 179.97438 * 23 22 20 48 48 H 1.09009 * 109.46022 * 58.27123 * 28 15 14 49 49 H 1.09002 * 109.46467 * 178.23340 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7068 -0.2499 -2.4546 6 8 2.7296 -1.6965 -1.1192 7 6 2.0324 -0.7104 1.2304 8 8 2.7297 -1.6965 1.1191 9 7 1.7068 -0.2500 2.4545 10 6 2.1946 -0.9409 3.6507 11 1 3.1943 -1.3325 3.4624 12 6 1.2498 -2.0956 3.9951 13 6 1.7339 -2.7751 5.2791 14 6 1.7953 -1.7410 6.4057 15 7 2.7122 -0.6580 6.0281 16 6 2.9031 0.2820 7.1408 17 6 3.6171 -0.4149 8.2702 18 8 3.9361 -1.5798 8.1591 19 7 3.9067 0.2581 9.4015 20 6 4.5613 -0.3743 10.4269 21 1 4.8452 -1.4116 10.3278 22 6 4.8594 0.3193 11.5933 23 7 4.5134 1.5813 11.7140 24 14 5.7506 -0.5426 12.9906 25 1 6.0262 -1.9507 12.6080 26 1 7.0324 0.1553 13.2650 27 1 4.9023 -0.5171 14.2092 28 6 2.2428 0.0399 4.8244 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.1489 0.5386 -2.5436 36 1 2.0298 -0.7073 -3.2466 37 1 1.1488 0.5385 2.5436 38 1 1.2460 -2.8188 3.1796 39 1 0.2414 -1.7101 4.1449 40 1 2.7263 -3.1954 5.1165 41 1 1.0418 -3.5713 5.5533 42 1 2.1533 -2.2185 7.3178 43 1 0.8000 -1.3311 6.5770 44 1 1.9324 0.6360 7.4880 45 1 3.4990 1.1297 6.8023 46 1 3.6519 1.1898 9.4904 47 1 4.7212 2.0654 12.5284 48 1 1.2453 0.4415 5.0032 49 1 2.9256 0.8559 4.5881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494271632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:54 Heat of formation + Delta-G solvation = -109.264386 kcal Electronic energy + Delta-G solvation = -30227.043433 eV Core-core repulsion = 25995.802772 eV Total energy + Delta-G solvation = -4231.240661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.07083 -39.50119 -38.53517 -37.43043 -35.53074 -34.62333 -33.80097 -33.43553 -32.47650 -31.18322 -29.46863 -28.00716 -27.41209 -24.84311 -24.66062 -23.30728 -22.80868 -21.49639 -20.14564 -19.53311 -19.15130 -18.19391 -17.84526 -17.00693 -16.45683 -16.07571 -15.81488 -15.60959 -15.20021 -14.86486 -14.61486 -14.58573 -14.44324 -14.22217 -13.94573 -13.79669 -13.42315 -13.31134 -13.16209 -12.88381 -12.76960 -12.74381 -12.64103 -12.42104 -12.04449 -11.79968 -11.52419 -11.43441 -11.25096 -11.06134 -10.75517 -10.56325 -10.41099 -10.32567 -10.24219 -10.20786 -9.97782 -9.48900 -9.43797 -9.09806 -8.42911 -7.96668 -7.84708 -6.40713 -3.81200 2.30994 2.58754 2.67851 3.17389 3.21956 3.28081 3.35639 3.91096 3.98982 4.15981 4.19134 4.29825 4.41826 4.56007 4.79901 4.85067 4.90328 5.06777 5.08238 5.10474 5.12398 5.17570 5.26151 5.34429 5.40387 5.48139 5.55446 5.61164 5.65948 5.74608 5.82525 5.92927 6.03450 6.12438 6.15909 6.27606 6.37871 6.44466 6.52003 6.59729 6.94051 7.26613 7.36972 7.41125 7.56906 7.96155 8.08152 8.18383 8.63175 9.19766 9.55819 10.07710 10.77164 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027838 B = 0.001960 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.562096 B =14284.519660 C =14559.899502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.140 4.140 4 C 0.524 3.476 5 N -0.858 5.858 6 O -0.493 6.493 7 C 0.521 3.479 8 O -0.489 6.489 9 N -0.725 5.725 10 C 0.150 3.850 11 H 0.099 0.901 12 C -0.128 4.128 13 C -0.111 4.111 14 C 0.051 3.949 15 N -0.511 5.511 16 C 0.048 3.952 17 C 0.444 3.556 18 O -0.575 6.575 19 N -0.565 5.565 20 C -0.296 4.296 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.052 3.948 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.398 0.602 36 H 0.403 0.597 37 H 0.394 0.606 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.022 0.978 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.392 0.608 47 H 0.270 0.730 48 H 0.033 0.967 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.494 5.397 -25.240 29.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.197 4.197 4 C 0.305 3.695 5 N -0.424 5.424 6 O -0.363 6.363 7 C 0.304 3.696 8 O -0.360 6.360 9 N -0.378 5.378 10 C 0.046 3.954 11 H 0.117 0.883 12 C -0.166 4.166 13 C -0.149 4.149 14 C -0.076 4.076 15 N -0.236 5.236 16 C -0.083 4.083 17 C 0.229 3.771 18 O -0.458 6.458 19 N -0.202 5.202 20 C -0.426 4.426 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.077 4.077 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.226 0.774 36 H 0.234 0.766 37 H 0.228 0.772 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.124 0.876 43 H 0.040 0.960 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.051 0.949 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.789 3.120 -25.054 27.864 hybrid contribution -1.027 1.462 0.629 1.895 sum -12.817 4.583 -24.425 27.962 Atomic orbital electron populations 1.21851 0.90471 1.03671 1.03647 1.20910 0.98795 0.97833 0.93677 1.21859 1.02611 0.91589 1.03668 1.19891 0.80536 0.84576 0.84464 1.43819 1.56691 1.34030 1.07832 1.90924 1.35062 1.24531 1.85830 1.19768 0.81117 0.84983 0.83775 1.90880 1.35081 1.24435 1.85632 1.45958 1.54295 1.32194 1.05370 1.20938 0.99566 0.92086 0.82795 0.88266 1.21968 0.98388 0.97732 0.98559 1.21508 1.02342 0.97542 0.93547 1.22314 0.92683 0.92354 1.00292 1.61370 1.48261 1.10914 1.03017 1.21833 0.99663 0.95059 0.91742 1.19720 0.85470 0.88031 0.83855 1.90499 1.57214 1.16888 1.81242 1.41870 1.51522 1.13368 1.13441 1.19751 1.32265 0.97743 0.92847 0.87835 1.25256 0.98131 0.95682 0.98966 1.69618 1.47505 1.08735 1.28576 0.85805 0.78756 0.79527 0.80295 1.19203 1.20780 1.20818 1.22243 0.98764 0.95984 0.90699 0.90675 0.90931 0.91347 0.91218 0.90941 0.90612 0.77406 0.76613 0.77167 0.91547 0.92426 0.90565 0.91472 0.87645 0.96011 0.93448 0.89319 0.77534 0.91975 0.94888 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 8.27 37.16 0.31 -0.31 16 2 C -0.11 -0.79 0.72 -156.81 -0.11 -0.90 16 3 C -0.14 -0.65 8.27 37.16 0.31 -0.34 16 4 C 0.52 5.17 6.75 -10.99 -0.07 5.10 16 5 N -0.86 -4.16 8.66 31.22 0.27 -3.89 16 6 O -0.49 -7.87 15.02 -18.96 -0.28 -8.16 16 7 C 0.52 6.13 6.44 -10.99 -0.07 6.06 16 8 O -0.49 -8.52 13.84 -18.97 -0.26 -8.79 16 9 N -0.73 -6.91 4.87 -53.73 -0.26 -7.17 16 10 C 0.15 1.88 2.61 -67.85 -0.18 1.70 16 11 H 0.10 1.57 7.58 -51.93 -0.39 1.18 16 12 C -0.13 -1.60 5.58 -26.61 -0.15 -1.74 16 13 C -0.11 -1.58 6.09 -26.65 -0.16 -1.75 16 14 C 0.05 0.83 5.11 -3.83 -0.02 0.81 16 15 N -0.51 -8.43 4.39 -236.11 -1.04 -9.46 16 16 C 0.05 0.84 5.45 -4.97 -0.03 0.82 16 17 C 0.44 10.38 7.46 -10.98 -0.08 10.30 16 18 O -0.57 -15.39 13.92 5.55 0.08 -15.31 16 19 N -0.57 -14.21 5.29 -10.96 -0.06 -14.26 16 20 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 24 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.05 0.64 4.93 -3.84 -0.02 0.62 16 29 H 0.07 0.22 7.56 -51.93 -0.39 -0.17 16 30 H 0.07 0.14 7.56 -51.93 -0.39 -0.26 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.07 0.15 7.56 -51.93 -0.39 -0.24 16 34 H 0.07 0.24 7.56 -51.93 -0.39 -0.15 16 35 H 0.40 0.55 7.67 -40.82 -0.31 0.24 16 36 H 0.40 1.71 8.93 -40.82 -0.36 1.34 16 37 H 0.39 2.43 7.44 -40.82 -0.30 2.13 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.11 2.10 5.80 -51.93 -0.30 1.80 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 45 H 0.09 1.39 7.98 -51.93 -0.41 0.98 16 46 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 49 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 LS Contribution 393.05 15.07 5.92 5.92 Total: -1.00 -37.98 393.05 -8.17 -46.14 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.71 Total: 10.21 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -0.52 Total: 12.44 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.36 Total: -58.54 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.47 Total: -32.26 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.98 -8.17 -46.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494271632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.121 kcal (2) G-P(sol) polarization free energy of solvation -37.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds