Wall clock time and date at job start Sat Apr 11 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46750 * 2 1 4 4 C 1.50702 * 109.46899 * 240.00154 * 2 1 3 5 5 N 1.34774 * 120.00141 * 60.00306 * 4 2 1 6 6 O 1.21283 * 119.99682 * 239.99887 * 4 2 1 7 7 C 1.50696 * 109.47069 * 120.00173 * 2 1 3 8 8 O 1.21287 * 119.99913 * 120.00163 * 7 2 1 9 9 N 1.34778 * 120.00005 * 299.99856 * 7 2 1 10 10 C 1.46496 * 120.00051 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.50100 * 35.08207 * 10 9 7 12 12 C 1.53122 * 109.50437 * 275.00393 * 10 9 7 13 13 C 1.53119 * 109.15843 * 182.36328 * 12 10 9 14 14 C 1.53045 * 109.27942 * 57.65498 * 13 12 10 15 15 N 1.46843 * 109.51801 * 300.81823 * 14 13 12 16 16 C 1.46902 * 110.99758 * 185.83903 * 15 14 13 17 17 C 1.50702 * 109.47027 * 66.04468 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99928 * 179.72353 * 17 16 15 20 20 C 1.37101 * 120.00327 * 180.27606 * 19 17 16 21 21 H 1.08001 * 119.99426 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00412 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47191 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46534 * 120.00189 * 24 22 20 27 27 H 1.48498 * 109.47283 * 240.00132 * 24 22 20 28 28 C 1.46845 * 111.20143 * 61.74309 * 15 14 13 29 29 H 1.09000 * 109.47099 * 299.99507 * 1 2 3 30 30 H 1.09005 * 109.46925 * 60.00047 * 1 2 3 31 31 H 1.08999 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46619 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47608 * 299.99759 * 3 2 1 34 34 H 1.09000 * 109.46917 * 60.00381 * 3 2 1 35 35 H 0.96999 * 120.00291 * 359.97438 * 5 4 2 36 36 H 0.96995 * 120.00229 * 180.02562 * 5 4 2 37 37 H 0.96997 * 120.00258 * 0.02562 * 9 7 2 38 38 H 1.08998 * 109.52375 * 62.46392 * 12 10 9 39 39 H 1.08998 * 109.57623 * 302.29936 * 12 10 9 40 40 H 1.08996 * 109.50539 * 297.71239 * 13 12 10 41 41 H 1.09002 * 109.53317 * 177.61228 * 13 12 10 42 42 H 1.08998 * 109.46085 * 180.80300 * 14 13 12 43 43 H 1.08997 * 109.45821 * 60.83502 * 14 13 12 44 44 H 1.09004 * 109.47131 * 306.04712 * 16 15 14 45 45 H 1.09000 * 109.47732 * 186.04822 * 16 15 14 46 46 H 0.97000 * 120.00317 * 0.28382 * 19 17 16 47 47 H 0.96996 * 120.00330 * 179.97438 * 23 22 20 48 48 H 1.09009 * 109.46022 * 58.27123 * 28 15 14 49 49 H 1.09002 * 109.46467 * 178.23340 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7068 -0.2499 -2.4546 6 8 2.7296 -1.6965 -1.1192 7 6 2.0324 -0.7104 1.2304 8 8 2.7297 -1.6965 1.1191 9 7 1.7068 -0.2500 2.4545 10 6 2.1946 -0.9409 3.6507 11 1 3.1943 -1.3325 3.4624 12 6 1.2498 -2.0956 3.9951 13 6 1.7339 -2.7751 5.2791 14 6 1.7953 -1.7410 6.4057 15 7 2.7122 -0.6580 6.0281 16 6 2.9031 0.2820 7.1408 17 6 3.6171 -0.4149 8.2702 18 8 3.9361 -1.5798 8.1591 19 7 3.9067 0.2581 9.4015 20 6 4.5613 -0.3743 10.4269 21 1 4.8452 -1.4116 10.3278 22 6 4.8594 0.3193 11.5933 23 7 4.5134 1.5813 11.7140 24 14 5.7506 -0.5426 12.9906 25 1 6.0262 -1.9507 12.6080 26 1 7.0324 0.1553 13.2650 27 1 4.9023 -0.5171 14.2092 28 6 2.2428 0.0399 4.8244 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.1489 0.5386 -2.5436 36 1 2.0298 -0.7073 -3.2466 37 1 1.1488 0.5385 2.5436 38 1 1.2460 -2.8188 3.1796 39 1 0.2414 -1.7101 4.1449 40 1 2.7263 -3.1954 5.1165 41 1 1.0418 -3.5713 5.5533 42 1 2.1533 -2.2185 7.3178 43 1 0.8000 -1.3311 6.5770 44 1 1.9324 0.6360 7.4880 45 1 3.4990 1.1297 6.8023 46 1 3.6519 1.1898 9.4904 47 1 4.7212 2.0654 12.5284 48 1 1.2453 0.4415 5.0032 49 1 2.9256 0.8559 4.5881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494271632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:53 Heat of formation + Delta-G solvation = -142.241242 kcal Electronic energy + Delta-G solvation = -30228.473417 eV Core-core repulsion = 25995.802772 eV Total energy + Delta-G solvation = -4232.670645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.88049 -40.73006 -39.82696 -38.81907 -36.31964 -36.04961 -35.42763 -34.13166 -33.61742 -33.15909 -30.52112 -28.91804 -28.32578 -26.49930 -25.44672 -24.35107 -24.02373 -22.46126 -21.16889 -20.97676 -20.35379 -19.84935 -18.86651 -17.77298 -17.73619 -17.26099 -16.81855 -16.52724 -16.40637 -16.28682 -16.19368 -15.72563 -15.49724 -15.25089 -15.12036 -14.98901 -14.78860 -14.47094 -14.35788 -13.86683 -13.50389 -13.45828 -13.41871 -13.28345 -13.23804 -13.05765 -12.99910 -12.67286 -12.39242 -12.35104 -12.26648 -12.12658 -11.89243 -11.80970 -11.57505 -11.40772 -11.03889 -10.60225 -10.39330 -10.22973 -10.04733 -9.97249 -9.17041 -8.45313 -5.93117 1.36595 1.41863 1.55689 1.58884 1.74412 1.86970 2.08350 2.30112 2.58875 2.87932 3.21911 3.39600 3.51836 3.73121 3.74745 3.85216 3.95956 4.03010 4.10197 4.18531 4.32427 4.36955 4.45461 4.55715 4.61214 4.62786 4.69422 4.71927 4.72664 4.78836 4.82215 4.90948 5.00900 5.05362 5.19427 5.23758 5.26178 5.35897 5.42890 5.47917 5.91150 5.94006 6.10610 6.24765 6.48474 6.60288 6.63620 7.15795 7.31007 7.45943 7.59596 8.16361 8.72277 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027838 B = 0.001960 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.562096 B =14284.519660 C =14559.899502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.138 4.138 4 C 0.515 3.485 5 N -0.831 5.831 6 O -0.567 6.567 7 C 0.512 3.488 8 O -0.555 6.555 9 N -0.704 5.704 10 C 0.156 3.844 11 H 0.055 0.945 12 C -0.117 4.117 13 C -0.107 4.107 14 C 0.057 3.943 15 N -0.539 5.539 16 C 0.062 3.938 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.329 4.329 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.276 1.276 26 H -0.272 1.272 27 H -0.270 1.270 28 C 0.059 3.941 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.419 0.581 36 H 0.408 0.592 37 H 0.417 0.583 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.076 0.924 45 H 0.113 0.887 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.069 0.931 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.193 8.699 -26.297 32.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.196 4.196 4 C 0.298 3.702 5 N -0.397 5.397 6 O -0.444 6.444 7 C 0.298 3.702 8 O -0.431 6.431 9 N -0.358 5.358 10 C 0.050 3.950 11 H 0.074 0.926 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.071 4.071 15 N -0.265 5.265 16 C -0.068 4.068 17 C 0.227 3.773 18 O -0.501 6.501 19 N -0.212 5.212 20 C -0.459 4.459 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.201 1.201 26 H -0.197 1.197 27 H -0.195 1.195 28 C -0.069 4.069 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.251 0.749 36 H 0.239 0.761 37 H 0.255 0.745 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.131 0.869 46 H 0.231 0.769 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.568 6.542 -26.154 30.644 hybrid contribution -0.202 0.426 0.865 0.985 sum -14.770 6.968 -25.289 30.104 Atomic orbital electron populations 1.21954 0.87444 1.03353 1.06645 1.20927 1.00863 0.98412 0.90068 1.21963 1.01252 0.89662 1.06676 1.20454 0.79607 0.83819 0.86313 1.43598 1.55500 1.34077 1.06516 1.90903 1.38607 1.27892 1.86979 1.20661 0.79944 0.84291 0.85339 1.90865 1.38071 1.27545 1.86614 1.45684 1.53832 1.32374 1.03924 1.20643 0.97611 0.92593 0.84109 0.92640 1.21858 0.99687 0.97312 0.96676 1.21446 1.01089 0.97741 0.94239 1.22142 0.93437 0.92656 0.98851 1.61242 1.49729 1.11520 1.03977 1.21693 1.00466 0.94815 0.89872 1.20859 0.84278 0.87660 0.84496 1.90485 1.58535 1.19015 1.82109 1.41920 1.51992 1.13591 1.13734 1.19653 1.34390 0.97155 0.94720 0.90594 1.25984 0.98351 0.96366 1.00577 1.69667 1.47648 1.09376 1.29395 0.84909 0.78060 0.77998 0.77593 1.20088 1.19696 1.19507 1.22252 1.00887 0.95541 0.88223 0.88269 0.87432 0.93322 0.93537 0.87389 0.88239 0.74885 0.76092 0.74514 0.93128 0.89490 0.93796 0.90045 0.92063 0.93587 0.90655 0.86925 0.76931 0.91354 0.91341 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.27 71.98 0.60 -0.09 16 2 C -0.10 -1.25 0.72 -53.67 -0.04 -1.28 16 3 C -0.14 -0.79 8.27 71.98 0.59 -0.20 16 4 C 0.51 9.93 6.75 87.66 0.59 10.53 16 5 N -0.83 -6.36 8.66 -173.53 -1.50 -7.86 16 6 O -0.57 -19.29 15.02 20.40 0.31 -18.98 16 7 C 0.51 11.94 6.44 87.66 0.56 12.50 16 8 O -0.56 -20.69 13.84 20.39 0.28 -20.41 16 9 N -0.70 -12.03 4.87 -442.29 -2.15 -14.18 16 10 C 0.16 3.78 2.61 45.04 0.12 3.90 16 11 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 12 C -0.12 -2.83 5.58 30.67 0.17 -2.66 16 13 C -0.11 -3.11 6.09 30.65 0.19 -2.93 16 14 C 0.06 1.83 5.11 86.33 0.44 2.27 16 15 N -0.54 -17.27 4.39 -900.92 -3.96 -21.22 16 16 C 0.06 2.08 5.45 85.56 0.47 2.54 16 17 C 0.44 20.90 7.46 87.66 0.65 21.55 16 18 O -0.62 -34.49 13.92 -3.07 -0.04 -34.54 16 19 N -0.57 -29.36 5.29 -306.98 -1.62 -30.99 16 20 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 23 N -0.92 -49.44 13.05 21.66 0.28 -49.15 16 24 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 C 0.06 1.29 4.93 86.32 0.43 1.71 16 29 H 0.10 0.06 7.56 -2.39 -0.02 0.04 16 30 H 0.11 -0.19 7.56 -2.38 -0.02 -0.21 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.11 -0.13 7.56 -2.39 -0.02 -0.15 16 34 H 0.10 0.13 7.56 -2.39 -0.02 0.11 16 35 H 0.42 -0.47 7.67 -92.71 -0.71 -1.18 16 36 H 0.41 2.89 8.93 -92.71 -0.83 2.06 16 37 H 0.42 3.34 7.44 -92.71 -0.69 2.65 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.06 2.54 5.80 -2.39 -0.01 2.52 16 43 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 2.13 8.12 -2.38 -0.02 2.11 16 45 H 0.11 3.23 7.98 -2.39 -0.02 3.21 16 46 H 0.40 19.04 7.90 -92.71 -0.73 18.30 16 47 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 48 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 49 H 0.09 1.79 8.01 -2.39 -0.02 1.77 16 Total: -1.00 -92.25 393.05 -2.28 -94.53 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -1.95 Total: 27.77 kcal Atomic # 6 Polarization: 23.53 SS G_CDS: 6.05 Total: 29.58 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -8.95 Total: -123.41 kcal Atomic # 8 Polarization: -74.48 SS G_CDS: 0.55 Total: -73.93 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -92.25 -2.28 -94.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494271632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.715 kcal (2) G-P(sol) polarization free energy of solvation -92.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds