Wall clock time and date at job start Sat Apr 11 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.00177 * 2 1 4 4 C 1.54319 * 109.88347 * 121.10284 * 2 1 3 5 5 H 1.09002 * 110.71834 * 215.76233 * 4 2 1 6 6 N 1.46902 * 110.72244 * 338.85703 * 4 2 1 7 7 C 1.46897 * 111.00414 * 198.18753 * 6 4 2 8 8 C 1.50696 * 109.47237 * 180.02562 * 7 6 4 9 9 O 1.21295 * 120.00009 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00355 * 180.02562 * 8 7 6 11 11 C 1.37087 * 120.00474 * 179.97438 * 10 8 7 12 12 H 1.08005 * 120.00347 * 359.97438 * 11 10 8 13 13 C 1.38952 * 120.00343 * 179.97438 * 11 10 8 14 14 N 1.31410 * 119.99940 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00130 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47467 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47062 * 120.00125 * 15 13 11 18 18 H 1.48501 * 109.47280 * 240.00107 * 15 13 11 19 19 C 1.55154 * 102.94741 * 97.22131 * 4 2 1 20 20 C 1.54915 * 101.58068 * 35.49884 * 19 4 2 21 21 N 1.47022 * 109.87799 * 238.90640 * 2 1 3 22 22 C 1.34772 * 125.65148 * 59.49279 * 21 2 1 23 23 O 1.21284 * 119.99974 * 359.97438 * 22 21 2 24 24 C 1.50700 * 120.00343 * 179.97438 * 22 21 2 25 25 C 1.50702 * 109.47004 * 179.97438 * 24 22 21 26 26 O 1.21284 * 120.00513 * 0.02562 * 25 24 22 27 27 N 1.34781 * 119.99917 * 180.02562 * 25 24 22 28 28 C 1.46495 * 120.00142 * 180.02562 * 27 25 24 29 29 C 1.46501 * 119.99780 * 0.02562 * 27 25 24 30 30 H 1.08998 * 109.46473 * 305.16896 * 1 2 3 31 31 H 1.09000 * 109.47208 * 65.17229 * 1 2 3 32 32 H 1.09001 * 109.46856 * 185.17362 * 1 2 3 33 33 H 1.00907 * 110.99371 * 322.14063 * 6 4 2 34 34 H 1.08997 * 109.47177 * 59.99798 * 7 6 4 35 35 H 1.09004 * 109.46820 * 299.99532 * 7 6 4 36 36 H 0.97007 * 119.99321 * 359.97438 * 10 8 7 37 37 H 0.96993 * 120.00309 * 179.97438 * 14 13 11 38 38 H 1.09003 * 111.00645 * 153.57365 * 19 4 2 39 39 H 1.09005 * 111.00622 * 277.43126 * 19 4 2 40 40 H 1.08993 * 110.36617 * 204.14853 * 20 19 4 41 41 H 1.09006 * 110.36248 * 81.83119 * 20 19 4 42 42 H 1.08996 * 109.47210 * 299.99734 * 24 22 21 43 43 H 1.09004 * 109.46974 * 60.00452 * 24 22 21 44 44 H 1.08997 * 109.47433 * 89.99818 * 28 27 25 45 45 H 1.09007 * 109.47239 * 210.00105 * 28 27 25 46 46 H 1.09008 * 109.47050 * 329.99764 * 28 27 25 47 47 H 1.08994 * 109.47173 * 359.97438 * 29 27 25 48 48 H 1.08999 * 109.47473 * 120.00248 * 29 27 25 49 49 H 1.08999 * 109.46775 * 239.99866 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7497 1.2426 5 1 2.9640 -0.2814 1.6199 6 7 1.0266 -0.8030 2.2903 7 6 1.6220 -1.1119 3.5972 8 6 0.5391 -1.1587 4.6441 9 8 -0.6151 -0.9542 4.3324 10 7 0.8532 -1.4266 5.9271 11 6 -0.1318 -1.4687 6.8796 12 1 -1.1596 -1.2867 6.6021 13 6 0.1920 -1.7455 8.2023 14 7 1.4425 -1.9664 8.5402 15 14 -1.1502 -1.8020 9.5002 16 1 -2.4634 -1.5201 8.8671 17 1 -1.1805 -3.1500 10.1225 18 1 -0.8737 -0.7815 10.5430 19 6 2.3519 -2.1696 0.6922 20 6 2.8567 -1.8498 -0.7370 21 7 2.0299 -0.7140 -1.1840 22 6 1.7742 -0.3852 -2.4657 23 8 1.0763 0.5741 -2.7180 24 6 2.3554 -1.2094 -3.5855 25 6 1.9209 -0.6355 -4.9095 26 8 1.2097 0.3465 -4.9408 27 7 2.3226 -1.2134 -6.0589 28 6 1.9007 -0.6552 -7.3459 29 6 3.1812 -2.3998 -6.0212 30 1 -0.3632 0.5919 0.8401 31 1 -0.3634 0.4315 -0.9327 32 1 -0.3633 -1.0235 0.0927 33 1 0.5022 0.0584 2.3264 34 1 2.3467 -0.3406 3.8577 35 1 2.1222 -2.0792 3.5490 36 1 1.7764 -1.5898 6.1765 37 1 1.6686 -2.1593 9.4634 38 1 3.1271 -2.6620 1.2794 39 1 1.4451 -2.7738 0.6601 40 1 2.7087 -2.7080 -1.3924 41 1 3.9091 -1.5668 -0.7131 42 1 3.4434 -1.1933 -3.5216 43 1 2.0016 -2.2370 -3.5017 44 1 2.6287 0.0855 -7.6769 45 1 1.8340 -1.4543 -8.0843 46 1 0.9254 -0.1814 -7.2343 47 1 3.3885 -2.6655 -4.9846 48 1 2.6761 -3.2298 -6.5153 49 1 4.1182 -2.1867 -6.5356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179678721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:24 Heat of formation + Delta-G solvation = -80.372079 kcal Electronic energy + Delta-G solvation = -29617.766022 eV Core-core repulsion = 25387.778225 eV Total energy + Delta-G solvation = -4229.987797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.83146 -39.77566 -38.35026 -37.57892 -35.78561 -34.74459 -33.81070 -32.05030 -31.22413 -31.11633 -30.09559 -28.16230 -26.70889 -26.15075 -25.21055 -23.83501 -23.23260 -20.74075 -19.55237 -19.28980 -18.91161 -17.94530 -17.88816 -16.83693 -16.59299 -16.24432 -16.15555 -15.87431 -15.41467 -15.25446 -14.84807 -14.50485 -14.14623 -13.77398 -13.73091 -13.66577 -13.51527 -13.17575 -13.09828 -13.02192 -12.96068 -12.49321 -12.44474 -12.33740 -12.30346 -12.05195 -11.90586 -11.58534 -11.49564 -11.38833 -11.10368 -10.90189 -10.63150 -10.34646 -10.25128 -10.23026 -9.52856 -9.52687 -9.09369 -8.77146 -8.47809 -8.12165 -7.97004 -6.42770 -3.83385 2.29673 2.35813 2.56787 2.92338 3.15994 3.26809 3.34263 3.89787 4.01341 4.06093 4.13005 4.29200 4.44413 4.49269 4.58431 4.74768 4.77822 4.82305 4.92311 4.98839 5.00596 5.10798 5.13017 5.17086 5.21954 5.27152 5.31290 5.44038 5.50899 5.56862 5.65949 5.77659 5.85159 5.95077 6.00883 6.06143 6.16807 6.26604 6.33079 6.55804 6.89391 7.17457 7.36529 7.54831 7.59418 7.85571 8.05717 8.12891 8.60262 9.17336 9.53356 10.04743 10.75029 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.037189 B = 0.001736 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.733724 B =16127.762511 C =16527.510215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 H 0.073 0.927 4 C 0.077 3.923 5 H 0.058 0.942 6 N -0.655 5.655 7 C 0.050 3.950 8 C 0.441 3.559 9 O -0.582 6.582 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.123 4.123 20 C 0.097 3.903 21 N -0.616 5.616 22 C 0.528 3.472 23 O -0.492 6.492 24 C -0.160 4.160 25 C 0.511 3.489 26 O -0.489 6.489 27 N -0.629 5.629 28 C 0.087 3.913 29 C 0.074 3.926 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.354 0.646 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.063 0.937 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.395 -3.928 -26.919 29.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.036 3.964 3 H 0.091 0.909 4 C -0.035 4.035 5 H 0.075 0.925 6 N -0.290 5.290 7 C -0.083 4.083 8 C 0.226 3.774 9 O -0.466 6.466 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.161 4.161 20 C -0.026 4.026 21 N -0.353 5.353 22 C 0.314 3.686 23 O -0.364 6.364 24 C -0.202 4.202 25 C 0.297 3.703 26 O -0.360 6.360 27 N -0.367 5.367 28 C -0.055 4.055 29 C -0.069 4.069 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.177 0.823 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.082 0.918 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.693 -3.344 -27.312 29.174 hybrid contribution 0.785 0.316 1.148 1.426 sum 10.478 -3.027 -26.164 28.347 Atomic orbital electron populations 1.21983 0.93479 1.03449 1.02418 1.21574 0.96006 0.95222 0.83551 0.90946 1.22556 0.93961 0.95686 0.91253 0.92465 1.60317 1.23366 1.42205 1.03066 1.21720 0.95967 1.01400 0.89192 1.19789 0.89642 0.84581 0.83380 1.90536 1.20617 1.54695 1.80736 1.41862 1.10573 1.61752 1.05874 1.19759 0.91050 1.44941 0.87069 0.87851 1.25257 0.97201 0.97226 0.98262 1.69614 1.16963 1.48365 1.19396 0.85802 0.80747 0.77734 0.80080 1.19212 1.20759 1.20782 1.22868 1.02538 0.97175 0.93564 1.22390 0.94808 0.88896 0.96522 1.48519 1.51232 1.30779 1.04742 1.19527 0.81754 0.85530 0.81800 1.90861 1.36126 1.27300 1.82147 1.21608 1.03967 1.02022 0.92636 1.20072 0.81057 0.84328 0.84851 1.90875 1.34571 1.24304 1.86280 1.47763 1.51972 1.30600 1.06317 1.21590 1.01406 0.98817 0.83701 1.21864 0.94401 0.87208 1.03404 0.91311 0.91629 0.91372 0.82346 0.93789 0.89563 0.77489 0.91943 0.89942 0.89148 0.90609 0.91276 0.86272 0.86178 0.92809 0.91273 0.90436 0.90269 0.91847 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.31 37.16 0.31 -1.87 16 2 C 0.14 1.71 3.41 -66.95 -0.23 1.48 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.08 0.88 3.10 -65.88 -0.20 0.68 16 5 H 0.06 0.61 7.93 -51.93 -0.41 0.20 16 6 N -0.65 -9.95 5.14 -106.06 -0.55 -10.49 16 7 C 0.05 0.83 6.02 -4.98 -0.03 0.80 16 8 C 0.44 10.16 7.82 -10.99 -0.09 10.07 16 9 O -0.58 -15.59 15.78 5.54 0.09 -15.51 16 10 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 11 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 12 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 15 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 C -0.12 -1.14 6.62 -24.58 -0.16 -1.30 16 20 C 0.10 0.69 6.69 -2.53 -0.02 0.68 16 21 N -0.62 -6.55 3.08 -163.02 -0.50 -7.05 16 22 C 0.53 6.47 7.62 -10.99 -0.08 6.38 16 23 O -0.49 -8.53 13.00 -18.96 -0.25 -8.77 16 24 C -0.16 -1.21 3.50 -29.03 -0.10 -1.31 16 25 C 0.51 5.44 7.67 -10.98 -0.08 5.36 16 26 O -0.49 -7.85 13.76 -18.96 -0.26 -8.12 16 27 N -0.63 -4.52 3.27 -189.51 -0.62 -5.14 16 28 C 0.09 0.56 10.48 59.84 0.63 1.19 16 29 C 0.07 0.22 10.60 59.85 0.63 0.85 16 30 H 0.07 0.98 6.61 -51.93 -0.34 0.63 16 31 H 0.06 1.03 6.58 -51.93 -0.34 0.68 16 32 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 33 H 0.35 5.76 6.38 -39.29 -0.25 5.51 16 34 H 0.04 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 36 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 37 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 0.36 7.48 -51.93 -0.39 -0.02 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.12 0.53 7.79 -51.93 -0.40 0.12 16 43 H 0.12 0.57 7.49 -51.93 -0.39 0.19 16 44 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 46 H 0.08 0.65 7.42 -51.92 -0.39 0.27 16 47 H 0.08 0.11 5.76 -51.93 -0.30 -0.19 16 48 H 0.06 0.13 8.14 -51.93 -0.42 -0.30 16 49 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -37.66 396.41 -7.82 -45.49 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -7.69 Total: 10.27 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 0.33 Total: 15.06 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -1.00 Total: -60.35 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.42 Total: -32.39 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.66 -7.82 -45.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179678721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.883 kcal (2) G-P(sol) polarization free energy of solvation -37.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds