Wall clock time and date at job start Sat Apr 11 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47410 * 2 1 4 4 C 1.53004 * 109.47525 * 119.99734 * 2 1 3 5 5 C 1.52993 * 109.47360 * 184.99971 * 4 2 1 6 6 N 1.46905 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46943 * 180.02562 * 7 6 5 9 9 O 1.21292 * 120.00024 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99767 * 180.02562 * 8 7 6 11 11 C 1.37102 * 120.00095 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99386 * 359.97438 * 11 10 8 13 13 C 1.38941 * 120.00393 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00397 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00009 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47309 * 89.99758 * 15 13 11 17 17 H 1.48496 * 109.47518 * 209.99884 * 15 13 11 18 18 H 1.48503 * 109.47255 * 329.99853 * 15 13 11 19 19 N 1.46500 * 109.47120 * 239.99886 * 2 1 3 20 20 C 1.34779 * 120.00042 * 85.00050 * 19 2 1 21 21 O 1.21276 * 119.99621 * 359.97438 * 20 19 2 22 22 C 1.50700 * 120.00130 * 179.97438 * 20 19 2 23 23 N 1.46499 * 109.47174 * 179.97438 * 22 20 19 24 24 C 1.46760 * 124.35121 * 269.72520 * 23 22 20 25 25 C 1.54660 * 105.38219 * 162.85390 * 24 23 22 26 26 C 1.54622 * 101.68309 * 25.76703 * 25 24 23 27 27 C 1.34419 * 124.34433 * 90.02727 * 23 22 20 28 28 O 1.21279 * 124.94689 * 0.42518 * 27 23 22 29 29 H 1.09000 * 109.46886 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47161 * 299.99783 * 1 2 3 31 31 H 1.08995 * 109.47284 * 60.00507 * 1 2 3 32 32 H 1.09001 * 109.46514 * 64.99866 * 4 2 1 33 33 H 1.08998 * 109.46924 * 305.00346 * 4 2 1 34 34 H 1.09001 * 109.47393 * 60.00433 * 5 4 2 35 35 H 1.08998 * 109.47408 * 300.00078 * 5 4 2 36 36 H 1.00901 * 110.99869 * 56.04956 * 6 5 4 37 37 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 38 38 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 39 39 H 0.96997 * 120.00713 * 359.97438 * 10 8 7 40 40 H 0.97001 * 120.00755 * 180.02562 * 14 13 11 41 41 H 0.96995 * 120.00031 * 264.99706 * 19 2 1 42 42 H 1.09003 * 109.47200 * 300.00282 * 22 20 19 43 43 H 1.09000 * 109.47091 * 59.99943 * 22 20 19 44 44 H 1.08990 * 110.24901 * 281.98739 * 24 23 22 45 45 H 1.09006 * 110.24241 * 43.98528 * 24 23 22 46 46 H 1.09000 * 111.19426 * 267.59690 * 25 24 23 47 47 H 1.09004 * 110.82219 * 143.78007 * 25 24 23 48 48 H 1.09004 * 110.49090 * 216.30562 * 26 25 24 49 49 H 1.08999 * 110.60021 * 93.72037 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0546 -1.3062 2.5128 7 6 5.5181 -1.2226 2.6083 8 6 5.9826 -1.9435 3.8475 9 8 5.1740 -2.4743 4.5794 10 7 7.2964 -1.9976 4.1430 11 6 7.7191 -2.6530 5.2706 12 1 6.9990 -3.1256 5.9223 13 6 9.0736 -2.7092 5.5750 14 7 9.4786 -3.3370 6.6561 15 14 10.3190 -1.8925 4.4475 16 1 10.5336 -0.4886 4.8814 17 1 11.6048 -2.6324 4.5116 18 1 9.8085 -1.9070 3.0531 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0183 -2.3572 21 8 1.8581 1.1583 -2.4117 22 6 2.6499 -0.7286 -3.5875 23 7 2.6985 0.2126 -4.7091 24 6 1.5902 0.4468 -5.6422 25 6 1.9207 1.7848 -6.3441 26 6 3.4618 1.8277 -6.2266 27 6 3.7660 0.9683 -5.0193 28 8 4.8198 0.9618 -4.4189 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.7517 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 3.8532 0.4370 1.3574 35 1 3.9995 -1.0727 0.4260 36 1 3.7452 -2.2665 2.5272 37 1 5.9666 -1.6858 1.7294 38 1 5.8196 -0.1765 2.6615 39 1 7.9431 -1.5729 3.5580 40 1 10.4242 -3.3759 6.8689 41 1 2.2490 -1.6317 -1.1526 42 1 3.6492 -1.1204 -3.3979 43 1 1.9777 -1.5509 -3.8325 44 1 1.5340 -0.3611 -6.3716 45 1 0.6497 0.5303 -5.0974 46 1 1.4661 2.6266 -5.8218 47 1 1.6095 1.7616 -7.3885 48 1 3.8037 2.8497 -6.0632 49 1 3.9263 1.4093 -7.1194 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568601708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:21 Heat of formation + Delta-G solvation = -101.909264 kcal Electronic energy + Delta-G solvation = -29016.653519 eV Core-core repulsion = 24785.731800 eV Total energy + Delta-G solvation = -4230.921719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.00519 -39.77113 -38.48895 -37.08880 -36.65537 -35.07150 -33.87224 -33.43576 -31.88812 -31.62120 -29.43132 -28.01078 -27.79320 -26.37776 -23.99436 -22.62796 -22.33593 -21.70265 -20.90080 -19.80490 -19.35489 -18.33759 -17.88175 -17.29716 -16.81491 -16.37852 -16.18607 -15.82654 -15.51807 -15.17779 -14.95281 -14.47923 -14.24294 -14.14999 -14.02132 -13.94953 -13.79842 -13.49668 -13.38737 -13.07682 -12.99869 -12.87768 -12.45425 -12.38203 -12.31995 -12.13155 -11.93928 -11.75191 -11.50592 -11.41440 -11.21984 -11.13860 -11.02626 -10.57624 -10.42728 -10.18532 -9.96378 -9.55962 -9.42162 -9.14854 -8.58230 -8.18515 -8.13187 -6.29999 -3.81434 2.10052 2.28448 2.43996 2.99403 3.04779 3.09365 3.17015 3.75130 3.89018 3.99051 3.99639 4.11951 4.32064 4.39274 4.52380 4.61257 4.68725 4.74278 4.79967 4.82198 4.95766 5.05837 5.06880 5.16144 5.23194 5.23542 5.29195 5.34343 5.45088 5.46677 5.51829 5.63271 5.68692 5.81532 5.83301 5.89215 5.92649 5.95682 6.02957 6.23499 6.63394 7.08530 7.13514 7.57385 7.59815 7.76636 7.89122 8.15515 8.60982 8.95967 9.43716 9.83878 10.83043 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.001964 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.216223 B =14251.871369 C =15992.048888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.089 0.911 4 C -0.125 4.125 5 C 0.059 3.941 6 N -0.669 5.669 7 C 0.048 3.952 8 C 0.450 3.550 9 O -0.565 6.565 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.881 5.881 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 N -0.723 5.723 20 C 0.496 3.504 21 O -0.529 6.529 22 C 0.106 3.894 23 N -0.606 5.606 24 C 0.105 3.895 25 C -0.130 4.130 26 C -0.153 4.153 27 C 0.522 3.478 28 O -0.527 6.527 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.026 0.974 36 H 0.349 0.651 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.371 0.629 40 H 0.273 0.727 41 H 0.400 0.600 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.753 7.215 -30.159 36.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.163 4.163 5 C -0.070 4.070 6 N -0.301 5.301 7 C -0.085 4.085 8 C 0.236 3.764 9 O -0.447 6.447 10 N -0.230 5.230 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.521 5.521 15 Si 0.706 3.294 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 N -0.376 5.376 20 C 0.280 3.720 21 O -0.405 6.405 22 C -0.020 4.020 23 N -0.340 5.340 24 C -0.018 4.018 25 C -0.168 4.168 26 C -0.193 4.193 27 C 0.310 3.690 28 O -0.402 6.402 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.169 0.831 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.235 0.765 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.121 0.879 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.867 8.133 -28.759 35.343 hybrid contribution 1.514 -0.541 -1.348 2.098 sum -17.353 7.592 -30.107 35.570 Atomic orbital electron populations 1.22140 0.94981 1.02155 1.02580 1.20995 0.94019 0.97722 0.83414 0.89288 1.21878 0.95785 1.01295 0.97317 1.21968 0.94343 0.99831 0.90889 1.60045 1.09537 1.21752 1.38789 1.21702 0.88771 1.01327 0.96684 1.19709 0.82871 0.85603 0.88243 1.90558 1.52927 1.49397 1.51850 1.42215 1.05986 1.50567 1.24237 1.19432 0.93495 1.30433 1.00026 0.86279 1.25036 0.96997 0.97439 0.96692 1.69618 1.16287 1.41709 1.24518 0.86672 0.81888 0.80260 0.80579 1.19563 1.20173 1.19514 1.46136 1.67622 1.14133 1.09746 1.21171 0.77876 0.87938 0.85026 1.90708 1.49212 1.15719 1.84853 1.21197 1.04600 0.91654 0.84591 1.47790 1.15683 1.42134 1.28378 1.22136 0.90183 0.97672 0.91761 1.22606 0.94812 0.97463 1.01877 1.22304 0.97470 1.01856 0.97685 1.20964 0.82920 0.79872 0.85261 1.90757 1.26196 1.66846 1.56447 0.92389 0.91309 0.92337 0.91225 0.89020 0.91073 0.95571 0.83144 0.93820 0.89489 0.79662 0.91616 0.76550 0.86915 0.87223 0.90797 0.90268 0.89668 0.89088 0.87879 0.87727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.15 0.35 -0.87 16 2 C 0.14 1.24 2.57 -67.93 -0.17 1.06 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 4 C -0.12 -1.12 5.01 -26.73 -0.13 -1.26 16 5 C 0.06 0.69 5.57 -3.82 -0.02 0.66 16 6 N -0.67 -10.29 6.13 -115.06 -0.70 -10.99 16 7 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 8 C 0.45 10.41 7.82 -10.99 -0.09 10.33 16 9 O -0.57 -15.33 15.78 5.55 0.09 -15.25 16 10 N -0.59 -14.37 5.09 -10.96 -0.06 -14.43 16 11 C -0.31 -8.76 10.16 -14.93 -0.15 -8.92 16 12 H 0.12 3.89 7.39 -52.48 -0.39 3.51 16 13 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 14 N -0.88 -26.01 13.96 55.49 0.77 -25.24 16 15 Si 0.88 19.77 27.73 -169.99 -4.71 15.06 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.27 -5.56 6.52 56.52 0.37 -5.19 16 19 N -0.72 -5.46 4.53 -53.81 -0.24 -5.70 16 20 C 0.50 4.70 7.86 -10.98 -0.09 4.62 16 21 O -0.53 -7.16 16.09 5.56 0.09 -7.07 16 22 C 0.11 0.72 6.41 -5.19 -0.03 0.69 16 23 N -0.61 -4.82 2.42 -173.67 -0.42 -5.24 16 24 C 0.11 0.48 7.36 -3.03 -0.02 0.45 16 25 C -0.13 -0.50 7.19 -25.01 -0.18 -0.68 16 26 C -0.15 -0.92 6.86 -26.74 -0.18 -1.10 16 27 C 0.52 5.46 8.02 -10.86 -0.09 5.37 16 28 O -0.53 -7.98 17.59 5.56 0.10 -7.88 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.28 7.75 -51.93 -0.40 -0.12 16 36 H 0.35 5.40 8.43 -39.29 -0.33 5.07 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.37 7.98 5.76 -40.82 -0.24 7.74 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.40 2.06 8.60 -40.82 -0.35 1.70 16 42 H 0.11 0.80 7.92 -51.93 -0.41 0.39 16 43 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 48 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 409.92 15.07 6.18 6.18 Total: -1.00 -39.21 409.92 -7.87 -47.08 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -8.02 Total: 11.28 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: -0.93 Total: 12.20 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -0.65 Total: -61.60 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: 0.27 Total: -30.20 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.71 Total: 15.06 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -39.21 -7.87 -47.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568601708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.831 kcal (2) G-P(sol) polarization free energy of solvation -39.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds