Wall clock time and date at job start Sat Apr 11 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 119.99781 * 2 1 4 4 N 1.34771 * 119.99622 * 179.97438 * 2 1 3 5 5 C 1.46505 * 119.99622 * 180.02562 * 4 2 1 6 6 C 1.50703 * 109.47064 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99985 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99944 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46992 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.48112 * 127.03304 * 359.69098 * 12 10 9 14 14 C 1.54604 * 103.42126 * 219.28131 * 13 12 10 15 15 H 1.08992 * 110.98889 * 204.37408 * 14 13 12 16 16 C 1.52999 * 110.57356 * 81.16654 * 14 13 12 17 17 C 1.54622 * 102.90884 * 322.86851 * 14 13 12 18 18 H 1.08996 * 110.32578 * 262.80660 * 17 14 13 19 19 C 1.53007 * 110.32530 * 140.58943 * 17 14 13 20 20 N 1.46494 * 109.47226 * 177.92332 * 19 17 14 21 21 C 1.36935 * 120.00230 * 180.02562 * 20 19 17 22 22 H 1.07994 * 119.99764 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00237 * 180.02562 * 21 20 19 24 24 N 1.31612 * 119.99970 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99700 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47007 * 90.00705 * 25 23 21 27 27 H 1.48506 * 109.46764 * 210.00196 * 25 23 21 28 28 H 1.48494 * 109.47224 * 330.00269 * 25 23 21 29 29 C 1.47487 * 127.02821 * 179.97438 * 12 10 9 30 30 H 1.09002 * 109.47498 * 270.00444 * 1 2 3 31 31 H 1.08999 * 109.47119 * 30.00132 * 1 2 3 32 32 H 1.08993 * 109.47391 * 150.00219 * 1 2 3 33 33 H 0.96996 * 120.00772 * 0.02562 * 4 2 1 34 34 H 1.09002 * 109.47068 * 60.00271 * 5 4 2 35 35 H 1.09001 * 109.47372 * 300.00183 * 5 4 2 36 36 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 38 38 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 39 39 H 1.09002 * 110.66412 * 337.76416 * 13 12 10 40 40 H 1.09002 * 110.66214 * 100.88169 * 13 12 10 41 41 H 1.09002 * 109.47659 * 306.58895 * 16 14 13 42 42 H 1.09004 * 109.46978 * 66.59266 * 16 14 13 43 43 H 1.09001 * 109.46920 * 186.58722 * 16 14 13 44 44 H 1.08998 * 109.47217 * 297.92410 * 19 17 14 45 45 H 1.09004 * 109.46826 * 57.92137 * 19 17 14 46 46 H 0.97001 * 120.00018 * 359.97438 * 20 19 17 47 47 H 0.97006 * 119.99838 * 179.97438 * 24 23 21 48 48 H 1.09004 * 109.91183 * 273.87751 * 29 12 10 49 49 H 1.09001 * 109.91498 * 34.97056 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 6 4.1482 -2.5880 0.0010 7 8 3.3601 -3.5098 0.0000 8 7 5.4733 -2.8343 0.0019 9 6 5.9616 -4.2155 0.0013 10 6 7.4686 -4.2155 0.0020 11 8 8.0749 -3.1652 0.0034 12 7 8.1424 -5.3828 0.0020 13 6 7.5645 -6.7465 0.0078 14 6 8.5002 -7.5288 0.9580 15 1 8.4742 -8.5963 0.7399 16 6 8.1251 -7.2667 2.4180 17 6 9.8922 -6.9378 0.6357 18 1 10.4208 -7.5775 -0.0709 19 6 10.7093 -6.7723 1.9187 20 7 12.0404 -6.2584 1.5871 21 6 12.9535 -6.0298 2.5817 22 1 12.6921 -6.2279 3.6106 23 6 14.2147 -5.5424 2.2674 24 7 15.0924 -5.3231 3.2233 25 14 14.6665 -5.1991 0.4877 26 1 14.3128 -3.7972 0.1489 27 1 16.1258 -5.4006 0.2998 28 1 13.9203 -6.1264 -0.4002 29 6 9.6062 -5.5633 0.0022 30 1 -0.3634 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6959 -2.0072 0.0005 34 1 4.0088 -0.6532 0.8911 35 1 4.0096 -0.6535 -0.8888 36 1 6.1036 -2.0970 0.0024 37 1 5.5990 -4.7287 -0.8894 38 1 5.5974 -4.7300 0.8905 39 1 6.5468 -6.7313 0.3980 40 1 7.5874 -7.1782 -0.9928 41 1 8.1020 -6.1923 2.6000 42 1 7.1421 -7.6912 2.6223 43 1 8.8640 -7.7302 3.0717 44 1 10.2043 -6.0712 2.5832 45 1 10.8058 -7.7380 2.4151 46 1 12.2754 -6.0809 0.6629 47 1 15.9738 -4.9829 3.0037 48 1 9.9832 -5.5400 -1.0204 49 1 10.0775 -4.7753 0.5896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754818607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:48 Heat of formation + Delta-G solvation = -120.150375 kcal Electronic energy + Delta-G solvation = -29327.593593 eV Core-core repulsion = 25095.880879 eV Total energy + Delta-G solvation = -4231.712713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.67265 -41.09232 -40.18395 -39.27911 -36.61222 -35.84618 -35.44599 -34.29219 -33.12458 -31.68958 -31.06273 -29.73275 -28.09206 -27.22956 -26.46486 -24.50887 -23.12486 -21.82738 -21.67036 -20.74353 -20.56133 -19.53215 -18.96892 -18.00459 -17.82066 -17.61094 -17.13077 -17.06663 -16.71444 -16.58781 -16.32829 -15.91223 -15.66169 -15.54594 -15.01298 -14.72782 -14.71200 -14.38235 -14.24147 -14.18808 -14.02580 -13.90144 -13.52053 -13.30885 -13.27505 -13.19382 -12.94378 -12.92138 -12.80037 -12.73734 -12.17554 -11.86563 -11.67505 -11.63165 -11.39073 -11.30911 -11.15435 -11.09030 -10.98229 -10.44515 -10.25195 -9.79052 -9.31173 -8.05389 -5.38617 1.31590 1.33655 1.38983 1.40633 1.43912 1.45250 1.58642 1.99528 2.45493 2.45663 3.22727 3.26674 3.44073 3.49204 3.63917 3.74990 3.93683 3.99284 4.18520 4.25176 4.27930 4.28169 4.29216 4.32733 4.53933 4.54708 4.59720 4.67070 4.68283 4.76120 4.88342 4.89025 4.96824 5.02050 5.06018 5.09817 5.17551 5.24308 5.25054 5.35384 5.53324 5.73424 6.18458 6.21981 6.41484 6.46488 6.87214 6.93313 7.05850 7.16097 7.82096 8.00193 9.16189 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.001971 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.416524 B =14200.733069 C =15119.015466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.508 3.492 3 O -0.598 6.598 4 N -0.714 5.714 5 C 0.098 3.902 6 C 0.523 3.477 7 O -0.559 6.559 8 N -0.712 5.712 9 C 0.115 3.885 10 C 0.519 3.481 11 O -0.582 6.582 12 N -0.610 5.610 13 C 0.100 3.900 14 C -0.089 4.089 15 H 0.123 0.877 16 C -0.147 4.147 17 C -0.101 4.101 18 H 0.101 0.899 19 C 0.165 3.835 20 N -0.759 5.759 21 C -0.235 4.235 22 H 0.054 0.946 23 C -0.065 4.065 24 N -0.984 5.984 25 Si 0.953 3.047 26 H -0.285 1.285 27 H -0.294 1.294 28 H -0.245 1.245 29 C 0.109 3.891 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.420 0.580 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.417 0.583 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.033 0.967 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.017 0.983 45 H 0.033 0.967 46 H 0.365 0.635 47 H 0.258 0.742 48 H 0.073 0.927 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.667 -1.860 -11.687 34.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.297 3.703 3 O -0.479 6.479 4 N -0.370 5.370 5 C -0.029 4.029 6 C 0.310 3.690 7 O -0.438 6.438 8 N -0.367 5.367 9 C -0.012 4.012 10 C 0.309 3.691 11 O -0.463 6.463 12 N -0.343 5.343 13 C -0.021 4.021 14 C -0.108 4.108 15 H 0.141 0.859 16 C -0.204 4.204 17 C -0.120 4.120 18 H 0.119 0.881 19 C 0.039 3.961 20 N -0.405 5.405 21 C -0.366 4.366 22 H 0.072 0.928 23 C -0.256 4.256 24 N -0.634 5.634 25 Si 0.780 3.220 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.169 1.169 29 C -0.014 4.014 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.259 0.741 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.255 0.745 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.052 0.948 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.051 0.949 46 H 0.198 0.802 47 H 0.066 0.934 48 H 0.091 0.909 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -32.463 -1.181 -11.474 34.451 hybrid contribution 1.650 0.598 -0.358 1.791 sum -30.813 -0.583 -11.832 33.012 Atomic orbital electron populations 1.21901 0.87678 1.06360 1.06385 1.21622 0.92426 0.82227 0.74020 1.90732 1.72070 1.33054 1.52010 1.45847 1.05706 1.10270 1.75130 1.21045 0.82963 0.93100 1.05816 1.20510 0.81865 0.91401 0.75270 1.90694 1.55495 1.46483 1.51156 1.45657 1.07339 1.09099 1.74615 1.21091 0.88477 0.85064 1.06550 1.20592 0.90451 0.82265 0.75834 1.90732 1.70909 1.32119 1.52526 1.48766 1.07428 1.06776 1.71339 1.22984 0.98649 0.79111 1.01390 1.22252 0.91499 1.01543 0.95502 0.85871 1.21842 1.02312 1.00686 0.95530 1.22330 0.97409 0.95320 0.96953 0.88057 1.20927 0.83480 0.96207 0.95479 1.42770 1.12460 1.80206 1.05037 1.19018 0.93215 1.34986 0.89339 0.92770 1.25522 0.96417 1.01959 1.01708 1.69885 1.06814 1.53316 1.33394 0.85439 0.77186 0.78485 0.80898 1.21142 1.22017 1.16883 1.22064 0.80785 0.97838 1.00726 0.87089 0.88577 0.87506 0.74105 0.87737 0.87481 0.74505 0.86047 0.86654 0.87049 0.87637 0.94786 0.89971 0.92986 0.96509 0.94930 0.80185 0.93361 0.90888 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 10.30 71.24 0.73 -0.27 16 2 C 0.51 7.78 7.94 87.66 0.70 8.48 16 3 O -0.60 -14.99 17.10 -3.03 -0.05 -15.04 16 4 N -0.71 -9.25 5.53 -466.78 -2.58 -11.83 16 5 C 0.10 1.36 6.15 85.63 0.53 1.88 16 6 C 0.52 8.12 7.90 87.66 0.69 8.81 16 7 O -0.56 -10.70 15.67 -3.02 -0.05 -10.75 16 8 N -0.71 -11.29 5.53 -466.78 -2.58 -13.87 16 9 C 0.11 1.71 5.09 85.63 0.44 2.15 16 10 C 0.52 11.84 7.96 87.66 0.70 12.54 16 11 O -0.58 -18.68 16.00 -3.03 -0.05 -18.73 16 12 N -0.61 -12.64 3.19 -810.01 -2.59 -15.22 16 13 C 0.10 1.14 6.37 86.62 0.55 1.70 16 14 C -0.09 -1.35 3.60 -9.70 -0.03 -1.38 16 15 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 16 C -0.15 -2.65 7.97 71.98 0.57 -2.07 16 17 C -0.10 -2.44 3.00 -9.89 -0.03 -2.47 16 18 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 19 C 0.16 5.87 4.18 86.38 0.36 6.23 16 20 N -0.76 -35.00 5.14 -343.46 -1.76 -36.77 16 21 C -0.23 -13.55 10.47 84.03 0.88 -12.67 16 22 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 23 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 24 N -0.98 -64.02 13.97 21.65 0.30 -63.71 16 25 Si 0.95 46.00 27.74 68.60 1.90 47.90 16 26 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.24 -10.35 6.52 99.48 0.65 -9.70 16 29 C 0.11 2.94 6.31 86.54 0.55 3.48 16 30 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.42 4.32 7.44 -92.71 -0.69 3.63 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.42 7.02 7.44 -92.71 -0.69 6.33 16 37 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.12 1.45 7.90 -2.39 -0.02 1.43 16 39 H 0.11 0.72 7.13 -2.39 -0.02 0.70 16 40 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.03 0.77 7.61 -2.39 -0.02 0.75 16 42 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.05 1.12 6.67 -2.39 -0.02 1.11 16 44 H 0.02 0.66 6.85 -2.39 -0.02 0.64 16 45 H 0.03 1.17 7.55 -2.38 -0.02 1.15 16 46 H 0.37 15.98 5.37 -92.71 -0.50 15.48 16 47 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 48 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 49 H 0.05 1.69 7.49 -2.39 -0.02 1.67 16 Total: -1.00 -86.34 400.71 -1.30 -87.64 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: -0.95 Total: 27.38 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 7.10 Total: 23.00 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -9.21 Total: -141.41 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.15 Total: -44.52 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.90 Total: 47.90 kcal Total: -86.34 -1.30 -87.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754818607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.507 kcal (2) G-P(sol) polarization free energy of solvation -86.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds