Wall clock time and date at job start Sat Apr 11 2020 06:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21285 * 120.00218 * 2 1 4 4 N 1.34781 * 120.00173 * 179.72118 * 2 1 3 5 5 C 1.46497 * 120.00052 * 179.97438 * 4 2 1 6 6 H 1.09006 * 109.47084 * 35.00334 * 5 4 2 7 7 C 1.53004 * 109.47410 * 275.00652 * 5 4 2 8 8 C 1.50705 * 109.47126 * 155.00230 * 5 4 2 9 9 O 1.21276 * 119.99535 * 5.81175 * 8 5 4 10 10 N 1.34770 * 119.99816 * 185.81311 * 8 5 4 11 11 C 1.46502 * 120.00272 * 4.33631 * 10 8 5 12 12 C 1.46500 * 120.00020 * 184.33950 * 10 8 5 13 13 C 1.53001 * 109.47386 * 89.99530 * 12 10 8 14 14 H 1.08998 * 112.74016 * 75.77367 * 13 12 10 15 15 C 1.53515 * 113.47856 * 206.62372 * 13 12 10 16 16 C 1.53509 * 83.57433 * 140.79288 * 15 13 12 17 17 N 1.47476 * 113.47573 * 305.00404 * 13 12 10 18 18 C 1.46904 * 111.00005 * 106.53029 * 17 13 12 19 19 C 1.50700 * 109.47258 * 189.99900 * 18 17 13 20 20 O 1.21298 * 119.99837 * 359.97438 * 19 18 17 21 21 N 1.34770 * 120.00162 * 179.97438 * 19 18 17 22 22 C 1.37103 * 120.00342 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99494 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00086 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00104 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99883 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46836 * 89.99939 * 26 24 22 28 28 H 1.48496 * 109.47211 * 210.00203 * 26 24 22 29 29 H 1.48506 * 109.46912 * 330.00217 * 26 24 22 30 30 H 1.09003 * 109.47349 * 240.27388 * 1 2 3 31 31 H 1.08997 * 109.47535 * 0.27741 * 1 2 3 32 32 H 1.09004 * 109.47014 * 120.27873 * 1 2 3 33 33 H 0.97003 * 119.99882 * 0.02562 * 4 2 1 34 34 H 1.09003 * 109.46844 * 189.84438 * 7 5 4 35 35 H 1.09003 * 109.46852 * 309.83569 * 7 5 4 36 36 H 1.08993 * 109.47476 * 69.83933 * 7 5 4 37 37 H 1.09006 * 109.47139 * 95.87192 * 11 10 8 38 38 H 1.09003 * 109.46977 * 215.86684 * 11 10 8 39 39 H 1.08994 * 109.47303 * 335.86914 * 11 10 8 40 40 H 1.08994 * 109.47385 * 210.00040 * 12 10 8 41 41 H 1.09009 * 109.47012 * 329.99745 * 12 10 8 42 42 H 1.09000 * 114.16596 * 254.44019 * 15 13 12 43 43 H 1.08999 * 114.16972 * 27.13916 * 15 13 12 44 44 H 1.09003 * 113.47605 * 219.20744 * 16 15 13 45 45 H 1.08997 * 113.53153 * 88.75506 * 16 15 13 46 46 H 1.09005 * 109.47014 * 309.99887 * 18 17 13 47 47 H 1.09001 * 109.47242 * 69.99497 * 18 17 13 48 48 H 0.97001 * 119.99819 * 0.02562 * 21 19 18 49 49 H 0.97003 * 119.99846 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 3.6458 -1.1672 0.0051 6 1 4.0094 -0.3224 0.5902 7 6 4.1554 -1.0486 -1.4327 8 6 4.1485 -2.4519 0.6119 9 8 3.3655 -3.3291 0.9090 10 7 5.4679 -2.6258 0.8243 11 6 6.4038 -1.5315 0.5544 12 6 5.9663 -3.9091 1.3251 13 6 6.2963 -4.8241 0.1440 14 1 7.2270 -4.5511 -0.3533 15 6 6.1970 -6.3184 0.4815 16 6 5.5910 -6.4194 -0.9253 17 7 5.1671 -5.0138 -0.7856 18 6 5.3835 -4.2721 -2.0350 19 6 4.1179 -4.2858 -2.8530 20 8 3.1327 -4.8576 -2.4363 21 7 4.0807 -3.6627 -4.0474 22 6 2.9295 -3.6756 -4.7919 23 1 2.0523 -4.1847 -4.4209 24 6 2.8914 -3.0336 -6.0236 25 7 3.9589 -2.4146 -6.4752 26 14 1.3226 -3.0506 -7.0375 27 1 0.4885 -1.8756 -6.6785 28 1 1.6655 -2.9917 -8.4811 29 1 0.5666 -4.2981 -6.7588 30 1 -0.3634 -0.5096 0.8924 31 1 -0.3634 1.0276 -0.0050 32 1 -0.3633 -0.5182 -0.8875 33 1 1.6959 -2.0073 0.0094 34 1 5.2311 -1.2233 -1.4525 35 1 3.6556 -1.7889 -2.0575 36 1 3.9425 -0.0494 -1.8124 37 1 6.6051 -0.9893 1.4784 38 1 7.3356 -1.9388 0.1619 39 1 5.9673 -0.8522 -0.1777 40 1 6.8654 -3.7432 1.9184 41 1 5.2028 -4.3782 1.9458 42 1 7.1606 -6.8165 0.5893 43 1 5.4986 -6.5487 1.2861 44 1 4.7582 -7.1197 -0.9901 45 1 6.3330 -6.5735 -1.7087 46 1 5.6555 -3.2422 -1.8037 47 1 6.1876 -4.7416 -2.6017 48 1 4.8688 -3.2057 -4.3808 49 1 3.9322 -1.9661 -7.3349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230658564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:59 Heat of formation + Delta-G solvation = -50.709204 kcal Electronic energy + Delta-G solvation = -32440.827362 eV Core-core repulsion = 28212.125844 eV Total energy + Delta-G solvation = -4228.701518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71918 -39.78669 -38.73307 -37.70571 -35.45294 -34.79929 -33.85494 -31.73689 -31.22028 -30.52348 -29.18923 -28.31597 -26.72088 -25.74831 -24.28488 -23.68385 -22.81293 -20.33111 -19.66419 -19.32372 -19.17043 -17.86326 -17.40761 -16.72895 -16.08510 -15.95945 -15.84958 -15.51392 -15.22212 -15.04230 -14.60231 -14.47886 -14.14049 -13.90246 -13.74309 -13.46400 -13.27946 -13.03534 -12.74024 -12.64410 -12.47787 -12.36205 -12.32049 -12.03301 -11.68777 -11.61946 -11.54161 -11.46182 -11.26971 -11.16292 -11.01760 -10.77231 -10.47564 -10.38430 -10.18738 -9.79230 -9.51715 -9.46086 -8.95111 -8.83865 -8.41019 -8.10360 -7.91876 -6.38844 -3.79092 2.75109 2.78768 2.93859 3.18717 3.27255 3.32728 3.49594 3.94800 4.03416 4.26124 4.51297 4.52387 4.81467 4.94631 4.99835 5.07217 5.10877 5.22100 5.23029 5.24749 5.25865 5.35432 5.37693 5.43353 5.47850 5.49263 5.53782 5.67527 5.69949 5.77444 5.78731 5.88852 5.92873 6.01777 6.05997 6.24829 6.31697 6.45692 6.52246 6.60319 6.70649 7.28899 7.43769 7.57593 7.69036 8.09358 8.32886 8.39065 8.66150 9.22418 9.58215 10.11898 10.79095 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007936 B = 0.005416 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3527.570522 B = 5168.560477 C = 7565.274177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.516 3.484 3 O -0.557 6.557 4 N -0.708 5.708 5 C 0.129 3.871 6 H 0.103 0.897 7 C -0.171 4.171 8 C 0.518 3.482 9 O -0.500 6.500 10 N -0.615 5.615 11 C 0.059 3.941 12 C 0.138 3.862 13 C 0.000 4.000 14 H 0.073 0.927 15 C -0.134 4.134 16 C 0.002 3.998 17 N -0.414 5.414 18 C 0.006 3.994 19 C 0.449 3.551 20 O -0.565 6.565 21 N -0.569 5.569 22 C -0.294 4.294 23 H 0.101 0.899 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.926 3.074 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.414 0.586 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.389 0.611 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.163 0.894 14.499 16.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.303 3.697 3 O -0.435 6.435 4 N -0.362 5.362 5 C 0.020 3.980 6 H 0.121 0.879 7 C -0.229 4.229 8 C 0.304 3.696 9 O -0.372 6.372 10 N -0.350 5.350 11 C -0.084 4.084 12 C 0.015 3.985 13 C -0.111 4.111 14 H 0.091 0.909 15 C -0.173 4.173 16 C -0.127 4.127 17 N -0.136 5.136 18 C -0.126 4.126 19 C 0.234 3.766 20 O -0.447 6.447 21 N -0.207 5.207 22 C -0.424 4.424 23 H 0.119 0.881 24 C -0.179 4.179 25 N -0.545 5.545 26 Si 0.753 3.247 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.195 1.195 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.252 0.748 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.100 0.900 47 H 0.070 0.930 48 H 0.222 0.778 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.789 1.061 14.941 16.058 hybrid contribution 0.631 -0.118 -1.463 1.598 sum 6.420 0.944 13.478 14.958 Atomic orbital electron populations 1.21894 0.91489 1.05257 1.04640 1.20779 0.90716 0.83134 0.75059 1.90681 1.70898 1.31442 1.50489 1.45828 1.05791 1.09913 1.74705 1.20695 0.82360 0.96476 0.98480 0.87888 1.22414 1.01350 1.04648 0.94448 1.20382 0.82249 0.88608 0.78372 1.90719 1.54365 1.43026 1.49133 1.47535 1.06342 1.13681 1.67451 1.22166 0.93981 0.90437 1.01776 1.21406 0.99532 0.82810 0.94780 1.23908 0.94803 0.95949 0.96463 0.90904 1.23137 1.01117 0.94587 0.98411 1.23749 0.99383 0.93645 0.95939 1.68901 1.34608 1.02340 1.07728 1.22594 0.97496 0.99896 0.92637 1.19624 0.89394 0.84595 0.82972 1.90554 1.36122 1.47064 1.70977 1.41873 1.14193 1.48357 1.16315 1.19637 0.91759 1.31942 0.99062 0.88135 1.25198 0.98461 0.96771 0.97446 1.69604 1.28478 1.35480 1.20939 0.85923 0.81397 0.78821 0.78558 1.20455 1.21003 1.19506 0.89424 0.89069 0.88971 0.74804 0.91055 0.89736 0.90946 0.92521 0.91251 0.89497 0.90571 0.89165 0.90925 0.88746 0.89507 0.91902 0.90039 0.92983 0.77844 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.32 36.00 0.37 -1.58 16 2 C 0.52 7.96 7.90 -10.99 -0.09 7.87 16 3 O -0.56 -10.23 16.75 5.55 0.09 -10.14 16 4 N -0.71 -11.17 4.98 -54.93 -0.27 -11.45 16 5 C 0.13 1.97 2.15 -69.08 -0.15 1.82 16 6 H 0.10 1.47 7.17 -51.93 -0.37 1.10 16 7 C -0.17 -2.75 8.38 37.16 0.31 -2.44 16 8 C 0.52 8.12 6.48 -10.99 -0.07 8.05 16 9 O -0.50 -9.57 15.06 5.56 0.08 -9.48 16 10 N -0.62 -7.54 2.63 -181.57 -0.48 -8.01 16 11 C 0.06 0.53 9.74 59.85 0.58 1.11 16 12 C 0.14 1.54 5.64 -4.04 -0.02 1.52 16 13 C 0.00 0.00 3.35 -71.44 -0.24 -0.24 16 14 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 15 C -0.13 -1.47 8.00 -26.20 -0.21 -1.68 16 16 C 0.00 0.03 7.71 -7.55 -0.06 -0.03 16 17 N -0.41 -6.86 4.63 -237.96 -1.10 -7.96 16 18 C 0.01 0.11 5.30 -4.97 -0.03 0.08 16 19 C 0.45 10.55 6.82 -10.99 -0.07 10.47 16 20 O -0.57 -15.54 16.01 5.54 0.09 -15.45 16 21 N -0.57 -14.17 5.29 -10.96 -0.06 -14.23 16 22 C -0.29 -8.12 9.68 -14.93 -0.14 -8.27 16 23 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 26 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.41 6.74 7.74 -40.82 -0.32 6.42 16 34 H 0.07 0.98 4.46 -51.93 -0.23 0.75 16 35 H 0.08 1.70 7.07 -51.93 -0.37 1.33 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 39 H 0.09 0.83 4.09 -51.93 -0.21 0.62 16 40 H 0.08 0.60 8.07 -51.93 -0.42 0.19 16 41 H 0.09 1.17 7.10 -51.92 -0.37 0.81 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.06 7.94 -51.93 -0.41 0.65 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.06 0.85 7.42 -51.93 -0.39 0.46 16 46 H 0.08 1.34 6.31 -51.93 -0.33 1.01 16 47 H 0.05 0.86 7.30 -51.93 -0.38 0.48 16 48 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 49 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -35.56 397.26 -7.28 -42.85 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -7.41 Total: 18.24 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: 0.09 Total: 17.19 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -1.19 Total: -65.34 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: 0.27 Total: -35.07 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.56 -7.28 -42.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230658564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.861 kcal (2) G-P(sol) polarization free energy of solvation -35.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds