Wall clock time and date at job start Sat Apr 11 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.53002 * 109.46816 * 239.99976 * 2 1 3 5 5 N 1.46895 * 109.46747 * 185.00259 * 4 2 1 6 6 C 1.46902 * 110.99788 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.46907 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00434 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99745 * 180.02562 * 7 6 5 10 10 C 1.37104 * 120.00175 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99599 * 0.02562 * 10 9 7 12 12 C 1.38947 * 120.00382 * 179.97438 * 10 9 7 13 13 N 1.31410 * 120.00056 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 119.99773 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.46769 * 89.99938 * 14 12 10 16 16 H 1.48497 * 109.46740 * 209.99639 * 14 12 10 17 17 H 1.48499 * 109.47079 * 329.99745 * 14 12 10 18 18 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 19 19 C 1.46499 * 120.00225 * 59.99572 * 18 2 1 20 20 C 1.34780 * 119.99546 * 240.00135 * 18 2 1 21 21 O 1.21279 * 120.00031 * 359.97438 * 20 18 2 22 22 C 1.50699 * 119.99563 * 180.02562 * 20 18 2 23 23 N 1.46505 * 109.46731 * 179.97438 * 22 20 18 24 24 C 1.46757 * 124.35167 * 269.72176 * 23 22 20 25 25 C 1.54658 * 105.38488 * 162.85868 * 24 23 22 26 26 C 1.54623 * 101.68188 * 25.76758 * 25 24 23 27 27 C 1.34423 * 124.34761 * 90.02577 * 23 22 20 28 28 O 1.21279 * 124.94043 * 0.43069 * 27 23 22 29 29 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 31 31 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 32 32 H 1.08997 * 109.47059 * 305.00390 * 4 2 1 33 33 H 1.09000 * 109.47062 * 65.00459 * 4 2 1 34 34 H 1.00894 * 111.00510 * 56.04336 * 5 4 2 35 35 H 1.08998 * 109.46931 * 299.99594 * 6 5 4 36 36 H 1.09004 * 109.47343 * 60.00181 * 6 5 4 37 37 H 0.96995 * 120.00657 * 359.97438 * 9 7 6 38 38 H 0.97003 * 119.99873 * 180.02562 * 13 12 10 39 39 H 1.09002 * 109.47391 * 270.00005 * 19 18 2 40 40 H 1.09001 * 109.46813 * 150.00061 * 19 18 2 41 41 H 1.09004 * 109.47041 * 30.00189 * 19 18 2 42 42 H 1.09004 * 109.47017 * 299.99442 * 22 20 18 43 43 H 1.09002 * 109.47507 * 59.99434 * 22 20 18 44 44 H 1.09006 * 110.24871 * 281.98687 * 24 23 22 45 45 H 1.09004 * 110.24430 * 43.98309 * 24 23 22 46 46 H 1.09007 * 111.19137 * 267.59702 * 25 24 23 47 47 H 1.08993 * 110.82233 * 143.78180 * 25 24 23 48 48 H 1.09009 * 110.48746 * 216.31311 * 26 25 24 49 49 H 1.08998 * 110.59891 * 93.72404 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5040 -0.8267 -1.1904 6 6 4.0303 -1.5149 -2.3767 7 6 5.5317 -1.6035 -2.2813 8 8 6.1067 -1.1386 -1.3199 9 7 6.2355 -2.1983 -3.2647 10 6 7.6015 -2.2784 -3.1782 11 1 8.1134 -1.8652 -2.3217 12 6 8.3271 -2.8921 -4.1918 13 7 9.6363 -2.9694 -4.1086 14 14 7.4415 -3.6075 -5.6729 15 1 7.3213 -2.5685 -6.7272 16 1 8.2126 -4.7615 -6.2008 17 1 6.0866 -4.0610 -5.2681 18 7 2.0183 -0.6907 1.1961 19 6 1.6643 -2.0932 1.4280 20 6 2.7932 -0.0357 2.0833 21 8 3.0865 1.1253 1.8912 22 6 3.2959 -0.7463 3.3135 23 7 4.1102 0.1744 4.1107 24 6 5.5604 0.3409 3.9591 25 6 5.8953 1.6784 4.6595 26 6 4.7429 1.7925 5.6841 27 6 3.6258 0.9710 5.0791 28 8 2.4627 1.0232 5.4187 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -1.7198 -1.2952 33 1 1.7517 -0.1583 -2.1370 34 1 3.7995 -1.2884 -0.3433 35 1 3.6095 -2.5189 -2.4309 36 1 3.7558 -0.9571 -3.2721 37 1 5.7758 -2.5698 -4.0338 38 1 10.1428 -3.3975 -4.8164 39 1 0.7375 -2.1444 1.9993 40 1 2.4628 -2.5819 1.9863 41 1 1.5294 -2.5969 0.4707 42 1 2.4483 -1.0892 3.9069 43 1 3.9016 -1.6025 3.0165 44 1 6.0871 -0.4827 4.4412 45 1 5.8257 0.3925 2.9031 46 1 5.8736 2.5090 3.9539 47 1 6.8604 1.6212 5.1627 48 1 4.4340 2.8318 5.7968 49 1 5.0430 1.3782 6.6466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753694267.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:20 Heat of formation + Delta-G solvation = -84.653915 kcal Electronic energy + Delta-G solvation = -30530.922533 eV Core-core repulsion = 26300.749062 eV Total energy + Delta-G solvation = -4230.173471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.79152 -39.73539 -38.46992 -36.97021 -36.36781 -34.72518 -33.88508 -33.16412 -31.80009 -31.61575 -27.77572 -27.71205 -27.59189 -27.06293 -25.01581 -23.17852 -22.20340 -21.81529 -19.83729 -19.38597 -18.96467 -18.35600 -17.71632 -16.94868 -16.61974 -16.38498 -16.10978 -15.63578 -15.45386 -15.02719 -14.88261 -14.31087 -14.09686 -13.91125 -13.76718 -13.72447 -13.40600 -13.28977 -13.14278 -13.05180 -12.83370 -12.70860 -12.55523 -12.37732 -12.26292 -12.15899 -11.91651 -11.78998 -11.57408 -11.51773 -11.20572 -11.17520 -11.01514 -10.62327 -10.05667 -10.00277 -9.93325 -9.59793 -8.87766 -8.81718 -8.55857 -8.21454 -8.13113 -6.33625 -3.85056 2.33085 2.59274 2.70731 2.99440 3.04671 3.05534 3.12653 3.71433 4.02197 4.08125 4.19308 4.35039 4.40965 4.71990 4.75902 4.77546 4.83085 4.86902 4.95014 5.02231 5.03943 5.08350 5.19360 5.24639 5.32783 5.34695 5.38970 5.43321 5.47300 5.57577 5.61436 5.62656 5.67331 5.76648 5.87006 5.89986 5.90425 6.01431 6.21602 6.43674 6.94394 7.07495 7.22716 7.54528 7.56703 8.01121 8.11809 8.14955 8.57445 8.92469 9.39895 9.80342 10.79512 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011926 B = 0.002828 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.247684 B = 9898.525289 C =11740.405171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.110 0.890 4 C 0.050 3.950 5 N -0.663 5.663 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.563 6.563 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.612 5.612 19 C 0.071 3.929 20 C 0.501 3.499 21 O -0.516 6.516 22 C 0.109 3.891 23 N -0.601 5.601 24 C 0.101 3.899 25 C -0.129 4.129 26 C -0.152 4.152 27 C 0.523 3.477 28 O -0.538 6.538 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.083 0.917 34 H 0.348 0.652 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 1.133 12.907 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.128 0.872 4 C -0.081 4.081 5 N -0.296 5.296 6 C -0.085 4.085 7 C 0.236 3.764 8 O -0.445 6.445 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.348 5.348 19 C -0.072 4.072 20 C 0.287 3.713 21 O -0.390 6.390 22 C -0.017 4.017 23 N -0.335 5.335 24 C -0.022 4.022 25 C -0.167 4.167 26 C -0.192 4.192 27 C 0.311 3.689 28 O -0.415 6.415 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.101 0.899 34 H 0.168 0.832 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.109 0.891 48 H 0.119 0.881 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.129 2.619 13.259 21.043 hybrid contribution -0.805 -1.821 -1.398 2.433 sum -16.934 0.798 11.861 20.690 Atomic orbital electron populations 1.22091 0.94667 1.02219 1.02686 1.21146 0.93365 0.98974 0.83027 0.87241 1.22341 0.88818 0.98808 0.98087 1.59957 1.07683 1.57249 1.04660 1.21722 0.94876 0.96955 0.94953 1.19701 0.87999 0.83765 0.84978 1.90561 1.70997 1.50010 1.32930 1.42209 1.07860 1.52993 1.19984 1.19425 0.79520 1.35964 1.08444 0.86310 1.25035 0.95437 0.97664 0.98007 1.69621 1.05061 1.43448 1.34004 0.86670 0.79503 0.79793 0.83387 1.19587 1.20196 1.19578 1.47861 1.51556 1.12335 1.23073 1.21830 1.01056 0.81747 1.02573 1.21090 0.78152 0.87587 0.84426 1.90712 1.56130 1.16667 1.75502 1.21237 0.97086 0.92254 0.91156 1.47820 1.08951 1.41301 1.35386 1.22229 0.79136 0.97834 1.02990 1.22607 0.98446 0.97685 0.97957 1.22293 0.95003 1.01901 1.00029 1.20950 0.89190 0.79560 0.79157 1.90699 1.18685 1.67403 1.64718 0.92396 0.92059 0.91229 0.95306 0.89897 0.83207 0.93997 0.89449 0.79722 0.91607 0.92283 0.90905 0.90831 0.87304 0.87087 0.90669 0.89331 0.89559 0.89069 0.88073 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.19 37.16 0.34 -1.00 16 2 C 0.14 1.56 2.95 -67.93 -0.20 1.36 16 3 H 0.11 1.59 6.90 -51.93 -0.36 1.23 16 4 C 0.05 0.57 4.98 -3.83 -0.02 0.55 16 5 N -0.66 -10.39 6.11 -115.06 -0.70 -11.09 16 6 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 7 C 0.45 10.14 7.82 -10.99 -0.09 10.05 16 8 O -0.56 -15.04 15.78 5.55 0.09 -14.95 16 9 N -0.59 -13.92 5.09 -10.96 -0.06 -13.98 16 10 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 11 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.52 13.96 55.50 0.77 -24.74 16 14 Si 0.88 19.13 27.74 -169.99 -4.71 14.42 16 15 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 18 N -0.61 -6.76 1.83 -173.93 -0.32 -7.08 16 19 C 0.07 0.52 9.28 59.85 0.56 1.08 16 20 C 0.50 6.88 7.74 -10.98 -0.09 6.80 16 21 O -0.52 -9.31 15.76 5.56 0.09 -9.22 16 22 C 0.11 1.18 4.97 -5.19 -0.03 1.16 16 23 N -0.60 -7.18 2.42 -173.67 -0.42 -7.60 16 24 C 0.10 1.01 7.35 -3.03 -0.02 0.99 16 25 C -0.13 -1.08 7.19 -25.01 -0.18 -1.26 16 26 C -0.15 -1.37 6.86 -26.75 -0.18 -1.56 16 27 C 0.52 6.90 8.02 -10.86 -0.09 6.81 16 28 O -0.54 -9.03 17.59 5.56 0.10 -8.93 16 29 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 30 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.03 0.28 6.88 -51.93 -0.36 -0.08 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.35 5.72 7.56 -39.30 -0.30 5.43 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.44 6.44 -51.93 -0.33 0.10 16 41 H 0.07 0.50 6.53 -51.93 -0.34 0.16 16 42 H 0.11 1.06 7.89 -51.93 -0.41 0.65 16 43 H 0.11 0.94 7.40 -51.93 -0.38 0.55 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 49 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 401.63 15.07 6.05 6.05 Total: -1.00 -38.37 401.63 -7.13 -45.49 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -7.74 Total: 13.58 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: -0.27 Total: 18.06 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.72 Total: -64.50 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: 0.27 Total: -33.10 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.37 -7.13 -45.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753694267.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.160 kcal (2) G-P(sol) polarization free energy of solvation -38.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds